RNA id: XM_036952431.1


Basic Information

Item Value
RNA id XM_036952431.1
length 5528
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110495928
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 26513620 ~ 26592195 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctgcctcctctccttccccgtcGTCATGTTCACTTCCACTTATCATCATCCCCGACCACTGGCATTATACAGATCAACAATACATTGATCGACCCCTTATCGTACTCTAGCATAGATATTGAGCCTgcgtgctgctgctgctgctgattcAAGGAGTCGAGTCCATGCGAGCTGCCATCTGATCCACTCTTATCAATGAAGCACGAGATCATGGCGGATGGCCCCAGGTGTAAGAGGCGAAAACAAGCCAACCCAAGAAGGAAAAACGAAGCAGCGTTGAATTATGAGAACGTGATGGACACTGGTTCAGAGACAGAGGATGAGGACAAGCTGCTGGTATCAGAGGAGGACGGCCTACTCAACGGGGTGTGCAGCCCTGCCAGCCTGAATAACCACGACGCTGGATCCCCGAGGGTGGGCCAGGCCCTGACGACAAAGGAGGATGAGGACGATGACATGAGGGACAGCGGAGTAGACCATGTCTGGCATGACAACGACATGCTGCACGCCTCAGTCGACGGCACTGATGAAATGAAAGATGATTATGACACTTTGGGGCCTGACGCCCCTCTTCAGACAGTTGGAAACGGTACGGTTAAGAATGTTGTTGATTGCACTTCAGAGTTTGAGGAGTTCTTCGCTAAGCGTAGTAAGCTCCAGGAGGAGAGCCTGAGCGAGAGCCACAGCCACGTGGTCAGCATCGCTGAGTACCTGCAGCGGGGCGACACTGCCATCATTTACCCAGAAGCACCCGAGGGAGAGGAGCTGTCCCGTCTGGGCACGCCCGAAGCGCCTGAAACAAACGGCCAGGAGGAAAATGACCTGCCACCTGGAACTCCAGATGCTTTCGCCCAACTGTTGACCTGCCCCTACTGCGACCGGGGCTACAAGCGCTTGACATCGCTCAAGGAGCACATCAAGTACCGCCACGAGAAGAACGAGGAGAACTTCGCCTGCCCCCTGTGTAACTACACGTTTGCTTACCGCACTCAGCTTGAGCGACATATGGCCACGCACAAGCCCGACAGAGATCAGCACCAACTGCTGAACCAGGGGGCTGGCAACCGCAAGTTCAAATGCACAGAATGTGGCAAGGCCTTCAAATACAAGCACCATCTGAAGGAACACCTGCGGAttcacagtgGTGAGAAGCCATACGAATGCCCAAACTGCAAGAAGCGCTTCTCCCACTCAGGCTCCTACAGCTCTCACATCAGCAGCAAGAAGTGCATCGGCCTTATAGCAGTCAACGGGAGGATGCGCAACAACATGAAGACAGGCTCTTCCCCTACATCAGCCTCGTCCTCCCCCACTAACACCGCCATCACCCAGCTGAGACACAAGCTAGAGAACGGAAACGGAAACGGCAAGCTCCTGGGCCACCATCAGGACCAGAACAACCACCACCTGAACATCAAAACAGAACCACTAGACTTCAACGACTACAAACTCATGATGGCCTCCCATGGCTTCAGCGCACCTGTGCCCTTCATGAACGGAGGGATGGGGGGAAATAGCAGCCCGCTAGGGATCCACTGCTCAGCCCAGAGCCCCATGCAGCACCTGGGGATGGGGATCGAACAACAGCTCCTGGGCTACCCGTCCCTGAGCAACAACCTGAGCGAGGTCCAGAAGGTGCTCCAGATCGTGGACAACACTGTGTGCAGGCAGAAGATGGACTGCAAACCGGAGGAGATCTCCAGGCTCAAGGCTTACATGAAGGAGCTCGGGAACCAGATCGAGGAGCAGAAACAGGGACTGACGTCACAGGGGGGTCACCAGATTGGTCTGCCAGTCATCAGCCATAACGGTGCCACTAAAAGCATCATCGACTacacattagaaaaagtgaatgAAGCCAAAGCTTGTCTCCAGAGCTTGACCACGGACTCAAAGAGACAAATTAGCACTATCAAACGCGAGAAATCCAACCACATGCTAGATTTAGGTACAGAGGATAAGATGCATGAGAACAACATTATGTTTACGCCCTTTGCTTGCCAATACTGCAAAGAAGCCTTCCCAGGTCCAATTCCCTTGCATCAGCATGAACGTTACCTGTGTAAAATGAATGAGGAGATCAAGACAGTTCTCCAGACTAGCGAGAACCTTATGCCCACAAAACAGGGGATGTTTACAGAGAAGCATGCCCTCCTGCTCTCATCCATGCTGTCTGAGAAAAGCCCCATCAACCCGTACAAGGACCACATGTCAGTGCTCAAGGCCTACTTCGCTATGAACATGGAGCCCAATTCAGAGGAACTACTGAAGATCTCCATAGCAGTCGGCCTTCCTCAGGAATTCGTCAAAGAGTGGTTCGAGCAGAGGAAAGTTTACCAGTACGGCACCCCAAGAACTCCACCATTAGAACAACAACGGAACAACCATGCAGATATGGTTCTAGCCGcaaacaaccacaaccacactcCCTCTAAAGACTCAATGGCAGCGAGATCCCCAGTGTCCCTGATCAAGTCTAATAACCGTGACCGCAACCGTGACCACCATATCACATCCCCCTCCATTGCAGAGCTCCATAACAACGTCAACAACTGTGAGAACCAGCTCAGACTCATGAAAGCGAACACGTTCAGTGGACACACCAAACACATGGGTGACCACTCCAAATTGGACCACCAGTCAAGGAGCAGCACACCTTCTCCTTTGAACCTTTCCTCCACATCTTCCAAAAACTCCCAGAGTAGCTCATATACTCCAAACAGCCTGATGTCTGAGGACCTGAACCTCAACATGAACCTGTCTGAACAACCACTGGACCTGTCACTGCCAAAGCTCATGAAGGAGCCCAAACATGCCATGACCGTGAAGAGCAGACCTAAACTAAACGGTATTAACCACCATGACCACTCCAGTGTTCCCTCCCCACGAGAACACTTCGAAGAGCCACTTAACCTGGCCTATCTCAAGAAGGAGTTTGAAGCCAGAGGCCAGAACCACCACAATGGAGACCTCAACAAAAGCACCAGCCCCTTGTTCGGGATGAACCCCTTCGGTGCCAAACCTATGTACACGTCGCTTCCGCAACAGAGCGCATTTCCACCGGCCACCTTCATGTCTCCGATGCAGGCCAGCATGCCTGGGCTGAGGCCGTACCCAGGGCTGGATCAGATGGGCTTCCTACCACACATGGCCTACACTTATGCAACAGGAGCAGCTACCTTTGCTGAgatgcagcagcagcagaggagaaAATACCAGCGAAAGCCTGGTTTCCAGGGGGAGCTGCTAGACGGAACAGCCGATTACATGTCAGGACTGGATGACATGACCGATTCAGACTCCTGTCTGTCCCGGAAGAAGATTAAGAAGACAGAAAGTGGTATGTACGCGTGTGACTTGTGCGACAAAACATTCCAGAAGAGCAGTTCCCTCCTAAGACACAAATATGAACACACAGGTAAACGGCCACATCAGTGTCAAATCTGCAAGAAGGCATTCAAACACAAGCACCACCTTATAGAACATTCACGACTGCACTCTGGCGAGAAACCGTACCAGTGTGACAAGTGCGGGAAGCGCTTCTCTCACTCGGGCTCCTACTCCCAGCACATGAACCACCGTTACTCTTACTGCAAGAGGGAGGCCGAGGAGAGGGAGGCGGCCGAGAGAGAGGCCCGGGAGAAGGGCCACCTAGAGCCCACAGAGCTACTGTTGAGCCGGGCCTACTTACAGGGCATGACTCCTCAGGGCTACCCCGGCCTGGAGGACCGCGAGGGCAttctgagggaaggagggatgaacgGAGGCATGAGAGATCGTCAGAAGGAAGTTGAAGGAACGTACGCGAAAATAGGACGTAGGGAAGAGGActttgaggaggaggaagaggagagcgagAACAAGAGCATGGACACAGATCCAGACATGttgagggatgaggaggagaacgGCGAGCACTCGATGGACGATAGTTCGCTGGACGGGAAAACAGAAACCAAATCGGATCACGAGGACAATATGGAGGACGGCATGTAATAAAACTACTGCATTTAAAAAGCTTCCCATCTTACTTTTCTGTTCATTATTGTTACCTGCTTGGTTTTAAACGCTGCTGTGTTGAAGCTGTACATGCACGTGCCTGAAGCTTCTAGGAAGCTTTGTATTGAAGGACTCAAAGGGTGGTGGTTGTATATGTCTGCCCAAGGAGACATTGATTTGAAGTTTGAttttggggtggggtggggtggggggtggggggtgggggagaaTTGTGTAAGAAGAGGCTGCATTATGCAAAAATGAAAAATTAataaattaatacatttaaaatattGTACAGTATTAAGGCCTAAAAATATGTGTGGTGCTAACATCCTAAAAACTCTGTGTTCCATAGTCTTTATAGCACAAACTAGTGACTTGTACAAATTGCACTTCGCTTCTATAATCActacaaaaataataaaaaagtattgcctatgtatatatttatacagtgTTGAAAAAAACAGTAGTCTCCACGCTACAGTCCATCAGTTGTATTACTTATCTTTcacttaatgtgttgtctatAGTTTTGCCCTGTCGTCAGGCCAGCTAGCCACACAGTTTTAGGCCTCAGAATTTCTCTGTGAAGGAACTTAACAGATATTACCTGTTTGATTTTAAGATAATGAAGTCTTAAAGAGACCTTGAAATGAAGGGAAAATGGTTtgacagtacagtgcagtagatgGAAGGATCGTGTGAACAATTAAGGAGAAAGCCTTTGTAAGGTGTTTTTGATAAGAAAAAGCCTTATATGCAAACCTTTTAATCTGTGTGTTTCTGCAAGTGCCATCCTTGTATTGTGTGAAAGGAGGGTGACACATGTTACCTCTTCACCAGCTTCGGTATTAAGAGATAGCTCACCTTGATCTTTGAAGCACCCATGTCAGTATTAGTACACTAGGCAGCAGTTCCTTAGTTTACATATGTCTGTGCAATTTTCAGGTTTATTTCATTAACTTTTGTCAGTATTACACCAAacaatttttttaaacaacaaaatTGCATTCATTTTGTTTGTAGGttgaataacattttatttatgtGGCCCATTTTATATTTcctaattttatttatttcatactgtagtgtacagtattatagttcttcaatatatagatatattttagTAAAAATGAACTTGGCGTTGATCATTGGGGCAAATTTTACGTAAAGAGAGCATTTATTGTGTTTTGAAACATTAATTGTGAAATGCGAATTTTCAACtatattattttgttttatttcctTTATTTTCCAATTACTGGAAATTCCAAATTTGGGAACTTTTATACAATATTGTGAAAACACTGTATTTTTAACTAAAAAAATTCCACTTtcttcatctttttttttttgctaaaaaaATGAAGAGGGACTGTTAAGATACAATGTATGATACCATGACTGAAGAAAATCTTTCCTGAAATGTCTTTGTAAAAGTATTATTGAATTTTTAATTTGTAATTTCTCTTGGAAATGACCATGCTCGAATAAAAGTAGCCAAATTACAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1753749 lncRNA downstream 59534 26453689 ~ 26454086 (-) True G1531917
TU1753683 lncRNA downstream 105382 26407983 ~ 26408238 (-) True G1531851
TU1753673 lncRNA downstream 112047 26401361 ~ 26401573 (-) True G1531841
TU1753643 lncRNA downstream 138108 26375281 ~ 26375512 (-) True G1531811
TU1753642 lncRNA downstream 139076 26374239 ~ 26374544 (-) True G1531810
TU1753987 lncRNA upstream 41697 26631457 ~ 26631737 (-) True G1532126
TU1753995 lncRNA upstream 47327 26637087 ~ 26637422 (-) True G1532134
TU1754095 lncRNA upstream 108584 26698344 ~ 26698648 (-) True G1532233
TU1754122 lncRNA upstream 133170 26722930 ~ 26723158 (-) True G1532260
TU1754142 lncRNA upstream 147076 26736836 ~ 26737057 (-) True G1532280
XM_036952429.1 mRNA downstream 303241 26046428 ~ 26210379 (-) True lrp1ba
XM_036952428.1 mRNA downstream 478685 25981440 ~ 26034935 (-) False si:ch211-246m6.5
XM_036952427.1 mRNA downstream 478686 25981441 ~ 26034934 (-) True si:ch211-246m6.5
XM_021571448.2 mRNA downstream 537217 25973670 ~ 25976403 (-) False si:ch211-246m6.4
XM_036952426.1 mRNA downstream 551991 25935277 ~ 25961629 (-) True aox5
XM_021571461.2 mRNA upstream 475269 27065029 ~ 27083077 (-) True LOC110495931
XM_021571463.2 mRNA upstream 507220 27096980 ~ 27140486 (-) False LOC110495932
XM_021571465.2 mRNA upstream 507220 27096980 ~ 27140486 (-) False LOC110495932
XM_021571462.2 mRNA upstream 507220 27096980 ~ 27140487 (-) False LOC110495932
XM_021571464.2 mRNA upstream 507220 27096980 ~ 27140487 (-) True LOC110495932
TU1753025 other downstream 804746 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 939949 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 990440 25519421 ~ 25523180 (-) True G1531142
TU1752728 other downstream 1362626 25150068 ~ 25150994 (-) True G1530967
TU1751283 other downstream 2119936 24393375 ~ 24393684 (-) True G1529613
TU1755359 other upstream 597862 27187622 ~ 27188230 (-) False G1533378
TU1755360 other upstream 597862 27187622 ~ 27189549 (-) True G1533378
TU1755743 other upstream 1164414 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 1271286 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 1445204 28034964 ~ 28036616 (-) False LOC110495955

Expression Profile