RNA id: XM_021571464.2


Basic Information

Item Value
RNA id XM_021571464.2
length 4776
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110495932
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27096980 ~ 27140487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGATTCACCCACTCAATAGTTTAAGTAATTTGCGTTGTTCTGCTCGTAGTCTGACAAAGAGAAGTAgcagacagagaaagaaggaATCAAAGGAGAATTTCAGATTTAGTGGAGCTGTATCATAACTATTTTCAACAAAACATTTGCGATAGTCTTTCACGTCGCCGTCAGCCAGCAAGGACTATCCACAATTGCTTCCGTGTTTATGGGGGCGAAGTTGTCACTGAAACGTCCGTGCGTTTCTTTCGGCCTAAAATCGTGAATTTTGTTCATTTGTGTCCGATTTGAATGTTGGTCGGTCTGAGACTGGGAGCCGCCATGGCTGGTGCTGTCGGATCCTTTAGTCTCCATATAAGAATATGAAGATTTGTTATTGGACCTGATATTGGTTTCTTTGGGGAATCATTCAATGTAAGCAGACTTGACGTTCATGccactgtatgtagcctattCCTGTTTACcgttgtgtttaaaaaaaaatgtactggcAACTTTGAGAGGCCCAATTTATGAGACACCTATCTCAGGACGTTATTTCATAGAATGCCTTTATAACGTTAGCCTAGGTAAGTGAAAAGAACATACAAAATAAAAGGAATGACAGATTCTTGCTGAATGTGGCTGGACGACAGCTCAAGACCTGACACAGCTGACCGGTTCGAAattagtttgctagctagctagctggctggctagttCGTGCTAGAACGATATAAGAAGAAGCAGACCTCTATCGTGGAATTAGCTACCAATTATCTTTTAAGTCAAAGACTAATAGAACTGGAAAGTCAAAAGACTAATAGTACTGGGAAAAGTACGATTCGACTGAAGACGAAGCGGGGATATCTTGGATTGGAATATGTCGGGTCGGCCCAGAACCACCTCCTTTGCGGAGAGCTGCAAGACAGTGCCGCAGCCCTCAGCATTTGGCAGTATGAAAGTCAGCAgaGACAAAGATGGCAGTAAGGTGACCACAGTGGTAGCGACCCCAGGCCAGGGCCCCGACCGGCCGCAGGAGGTCAGCTATACAGACACTAAGGTCATCGGCAACGGCTCGTTCGGCGTGGTCTACCAGGCTAAACTGTGTGACTCCGGGGAGCTAATAGCCATCAAGAAGGTTCTGCAGGACAAGAGGTTCAAGaacCGGGAGCTGCAGATCATGAGGAAACTGGACCACTGCAACATTGTGCGTTTACGCTACTTCTTCTATTCCAGTGGAGACAAGAAGGACGAGGTGTATCTCAACCTGGTTCTGGACTACGTTCCTGAGACTGTGTACAGAGTGGCTAGACACTACAGCCGAGCCAAGCAGACCCTCCCCATGGTCTATGTGAAGATGTACATGTACCAGCTCTTCCGGAGCTTGGCCTACATCCATTCCTTTGGGATCTGCCATCGGGACATCAAGCCCCAGAACCTGCTGTTGGACCCGGAGACAGCCGTGCTCAAGCTCTGTGACTTTGGCAGTGCGAAGCAGCTGGTCCGTGGTGAGCCCAATGTGTCCTACATCTGCTCACGGTACTACAGAGCCCCCGAGCTCATCTTTGGGGCCACTGACTACACCTCCAGCATAGATGTATGGTCCGCTGGCTGCGTTCTAGCAGAACTGTTGCTAGGGCAACCCATTTTTCCCGGCGACAGTGGGGTGGATCAGCTAGTGGAGATCATCAAGGTTCTCGGCACTCCCACTCGGGAGCAGATCAGAGAGATGAATCCCAACTACACTGAGTTTAAGTTCCCTCAGATCAAGGCACACCCATGGACTAAGGTGAGTCAACAGGTGTTCCGGCCGCGCACGCCCCCTGAGGCCATCGCTCTGTGCTCGCGGCTGCTGGAGTACACGCCCACAGCGCGCTTCACGCCCCTGGAGGCCTGTGCCCACACCTTTTTCGACGAGCTCCGGGACCCCAACCTCAAGCTGCCCAACGGGCGCGAGAAGCCCCTGCTCTTCAACTTCTCCACACAGGAGTTGTCCAGTAACCCCTCTTTAGCCTCCATCCTCATCCCCGCCCACGCCCGGAATCAGCCCGGGGCCTTCACCCCTACCAACACCTCCGCACCCTCAGATGCCAACAGCGGAGACCGTGGCCATACCACCAACGCTGCCGCCGCCTCCACCTGAGACCTCTTCCTGACCCGTCTGCCCGCTGCCCATGCCCCAGCTCCTGGACAACAACAGTGGCATGGCTGCACACCAACCAACTAATGAAGCAAAGCAAGAAAACTGACGCCCGATAAAGATGAACGCAAGGAAAACCGAATCGGAACTTCGTTATTCCCCTACCACCTCCACCCTCTCCCATCGTTTTAatgtttgattatttatttgtacAAAAAGGACAACAGTGATATGTTCTCAGAGCTGCTCTTCATCTTTCTGTGCTTTGAAGAGGAGGGGACTGAGTGCAGGTGTGTTTAGTGTAGAGATAATGTATAGCTAAATAAGTATACAAAAGTACTTTGATGTGTTTGTTTCCATAGACAATCTTCCTTTTTTCTTACGCTTGGTATAGTCACCCACTCTCTCCGTGTGGGGGAGGCCTCTACATGCCTCTTGCAACAGCCTTACGTTCAGACTGTGGCCCCTTGGGGCCTCTGTCAACCCCATCCCACCCATTCATACATATACATCTGAAGACCTTGATGACATTGTGACTTTTATTGGTTGACCTCGATATCTGTCTGTGTTCAATGTACACATACACAGTTGATATATTGTAGAATTGTGTCAGCTACTCTCTCTCCTGCTTCAGAAATCACAATTCTGCTACTGTATGCAGCACCATTTTGTGATTCTGCTCGTAAGGCAACAGTTGTCTCGCACCTTCGCATGTTTTTTGGGTTTGTCCCCGTTTTAGCTGCCAGAAACGGTGCAGAAATGAGTTTTCCCCCGTTTTCCCCCTAAGGGTAATGCCGTACCCACAAAACTTTGCCAGAACAGACCTAAGAGCAAGAGATTCTGCTGGTCTTTCATGTGATTTCAATGAAGACCACAACCTCTGTTTTACTTTTCCTGCTGTTGTCAGATAGACATTATGACTAGTAAAGCCTGGTATTGTTCCGTTTCTTGTTAGGTTGGGGTGGGTTTTGGGGACTGGCTATGAAGGATGCTTGGATGAGGGTGTATGCTGTTGATTGTGCTGAATTTCATCACAATCTTTCTTTGTTACCATCTGTGTCCGAATGTTCCCTATaatttagtgcactgcttttgaccacagTCCACATTGCGCTGGGCAAaagtagtagggaatagggtgtcatttcagacgCAGCCTCATGTCATTTTAAACCACTGTTGGAAGTCCTTCCTCATTCTGACTTCACCCTTTCCTGCTCTTCTTTTACAACTGAAAGTCCTTCCATCCCATCCCTCAACACTTTGAAGACCTATACAAAAAGTACACACAAatgtgtatgtatttatgtaaGTAGATGCTCCTCACCAAACTGGCTTACGTGTGCGTGTCTTCCTGTGGTATGTATGGTATGTAAATAGGCAGACCCAAGAACTGTTAACGAgcaaaaacaaaaatgaatgATATAAAGAAGAATACAAAAGAAAAAAACATTCAGGTTAAAAGTTATTGTATAGTCAAACTGTAGATCAGCTTTGTTTTTCTCCTCCAGCCATTTAGTTCAATCTCGACTGTACAGTAGGTGCCAGCTGTATCATTGTAAGGATAACCAGTAATGTATAGTGTATCTATAGGTTGGAGTGCCTTTGCTTCCACTCGTTCGCTCCTCTCTTCCCCAGGTCTCCTCCCTCTATGGTCCTACCTGGAGGCTCTGTTGTAAAATTGCCCTTacgcacagatctaggatcagcttggcCTCCCGAAATCCtaaccatagtgggaaaacacAAAACTGACTCGAGACCAGCGTACAGGGCAGATTCACCCTATTCCTTCGTGGAGTGCTGTTGACTTCCCCTTTCCACCTCTCTGATCTTTCATGTTCCACAATTCACTGCAAAGCCAGGCGTCACACAGACCACACATCACCTCGTCACTGTTTCTTTTTGTACGATTGGCTATGTGTCTTTGACTTTGGGATCCCCTTTGGTGGTGGTGGGTTGGGGGAGTTGTAGCATTGATTTTCTCAGACACTTTAAAAATACATTCTCTTTCCAGGAAGGTTTGAGGTGggttttaaaatgtgtttttatggTTTTATGAGCGATGCATGTACAACCCCACatggttttggggggggggggaagtctTATCGTATTCAGTATTACTTTCTCAACTATGGCAATAAACAATTTGTCTGTAGGATTTGTGTGTCCACATTCTCAACAGCACTCTGGGAGAGATGTCATGTAGCACCAATCCTTCatgttttttattacattttgtaAAGCATATATTTGTATGCTTGCATCCGTAAATGTGTTGCTATCCAATAATTTGGCCTGTAAAACAAACAATGTGACCACTTCTTGTCTTTAAGGATAATATATGTACAAaacacaatgtttaaaaaaaaaatatatatatatatatacaattttaaaaagaaTGAAGGACTGGGTTATATTCAGAAATTAAGACTTTACAACAGAAAAAAAACTAACATTACTTCTACTTGAATGCCTCTGACTGAAATTTTGATTTCATTTTGAATATAAACCTTTTGTTCTGTGAAGGTATGCTTAATGTCCCCTCTCCCTGTAAATATTTCTGTCTCTATGTGACTTGGTTCAGAGAAATAGTTACCTGGTACTGTAATTTGCATTAAATAAACCGTAGGTTAGCCTGGAAAGGAA

Function

GO: NA

KEGG:

id description
K03083 GSK3B; glycogen synthase kinase 3 beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755203 lncRNA downstream 64278 27027800 ~ 27032702 (-) False G1533235
TU1755348 lncRNA upstream 30101 27170588 ~ 27171054 (-) True G1533367
TU1755362 lncRNA upstream 49135 27189622 ~ 27189973 (-) True G1533380
TU1755365 lncRNA upstream 52671 27193158 ~ 27193378 (-) True G1533383
TU1755369 lncRNA upstream 55348 27195835 ~ 27196116 (-) True G1533387
TU1755370 lncRNA upstream 56116 27196603 ~ 27205369 (-) False G1533388
XM_021571461.2 mRNA downstream 13903 27065029 ~ 27083077 (-) True LOC110495931
XM_036952432.1 mRNA downstream 504785 26513620 ~ 26592195 (-) False LOC110495928
XM_021571466.2 mRNA upstream 11708 27152195 ~ 27156287 (-) True LOC110495934
XM_021571467.2 mRNA upstream 18491 27158978 ~ 27185448 (-) True LOC110495935
XM_021571469.2 mRNA upstream 74579 27215066 ~ 27219473 (-) True LOC110495936
XM_036952443.1 mRNA upstream 116999 27257486 ~ 27292406 (-) False LOC110495938
XM_036952442.1 mRNA upstream 118353 27258840 ~ 27280895 (-) False LOC110495938
TU1753025 other downstream 1388106 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 1523309 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 1573800 25519421 ~ 25523180 (-) True G1531142
TU1752728 other downstream 1945986 25150068 ~ 25150994 (-) True G1530967
TU1751283 other downstream 2703296 24393375 ~ 24393684 (-) True G1529613
TU1755359 other upstream 47135 27187622 ~ 27188230 (-) False G1533378
TU1755360 other upstream 47135 27187622 ~ 27189549 (-) True G1533378
TU1755743 other upstream 613687 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 720559 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 894477 28034964 ~ 28036616 (-) False LOC110495955

Expression Profile