RNA id: XM_021571482.2


Basic Information

Item Value
RNA id XM_021571482.2
length 1895
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC110495942
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27462439 ~ 27477815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAGACTACTGGACATTCGAATGTTATTAGGAGAGATACCTATCGATGACCGCAACGTCGATGGGATGTGTGCTGttgacagttttttttatttgttcaaCATTTGAAAGCACCCATATTATATGATACATGTAGCCTGAGCCGCTATACGATATTTAGACAGCGAGGGTAGGATAAATCGGACTGGTAGGCACAGGTCTTGGACTGGAATGCCCGAGTATTGGCATCATTGGCAGCGACCATGATGGAAGCCCATTCGGCATCTCTAGATGAGTACCCGGAGGTGGATGAGGTCTTGGTGCAGATGCGCGTGGGAGCGGATGTGGAGGGGGATCCAGAGCAGAGTCTGAGCGAGGGGGGAGCAGGCAGCCCCTCTGCCATGCAGCCCCAGACACCCATGGACACAGACAAGCAGGCCATCTACAGGCACCCCCTGTTCCCTCTGCTGGCCCTACTCTTTGAGAAGTGTGAGCAGTCGACTCAGAGCTCGGACTGCGTCAGCTCTGCCAGCTTCAATGTGGACATTGAGAACTTTGTCCGTAGCCAGAAGAAAGAGGGCAAGGGCTTCTTCTGTGACGACCCAGACGTGGACAACCTGATGGTGAAGGCCATCCAGGTGTTGCGTATCCACCTCCTGGAGCTGGAGAAAGTGAGCGACTTGTGTAAGGACTTCTGTAGCCGCTACATCGCCTGCCTGCGCACCAAGATGAACAGTGAGACCCTGCTTAGTGGGGGAGAAACTGACagcccctgttcccctgtccaGATTCAGACCTCCAGCCCACTGACAGGAACCCTCAGCCCTCAAGGCATTGTTATGTCAGCCTCGTCCCTGCAGCAGGGCAACGTTACCCTGACAACAGTCAATTCTGCTGGCCAAGTGTTAGCAGGTATGTCTCCGTGGCATACCACCTCTACAGGTGGTACAGTGTACCAGCCCATCACAGTAGTCACTCCTCAGGGACAAGTGGTTGGACAAGCTATCTCACCCCAGACAATACGCATCAACAACACACAGCTCCAGTTGCAGCTCAATCAGGACCTGAGCAGTTTCTTCACCCAGGAGGACAGCTCACCCAAGAGCAACAAGAGGGGCGTCCTGCCCAAATCAGCCACCAACATCATGCGCACCTGGCTCTTCCAGCACATAGGGcatcccTATCCCACAGAGGACGAGAAGAAACAGCTCGCTATACAGACCAACCTGACCCTGCTGCAGGTCAACAACTGgttCATTAATGCTAGGAGGCGGATCCTCCAGCCCATGATGGACAGCAGTGCGTCGGACACGCCCAAGAGCAGGAAGAGGACTCCCCAGAGCCGGCCCACCCAGCGTTTCTGGCCCATGGCCAACAACATTGCCTCGGCCGGTGTAGGGCAAGAGGTGGCCATGGACGATGACGTTACCATGGTGACGATGGGCATGAGTGTAGACGAGCTGCAGACGCTGACATCAGACGGTGCAACACTGGCCATGCAGCAGGTGATGATGGGAGGAcacagcgaggaggaggagggcgagagtgaggaggaagaagaggaggagggggctgACATGGCCGGATTGGAGTGACATACCACTACAGCGGGATGTGATGTCACACCCTCGTGCATGCCTGTGTTTGACAATATTACTCAACACTCATCAGTGTCCAAGACTATCCACACTAGGCCTTTAAGGTCCTACTAGAAACAGAGAAAAAAATATGCTATTTTTATATGTAAAATGTTTGGAATGAAGGCTGTTTATTTTCATTTAGCTTTTTTGCttagtgtttttatttttagatctttttttaaagaatatttaTGTATGAACATTGAATGTCCAATATGGCTGACCTGCTTTTCAAGGTCTGTTGGATTTCTCTAATAATAAAATGTTCAAGAAGGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1754745 lncRNA upstream 9899 27452458 ~ 27452941 (+) True G1532827
TU1754715 lncRNA upstream 77976 27384550 ~ 27384864 (+) True G1532803
TU1754685 lncRNA upstream 123743 27338834 ~ 27339097 (+) True G1532773
TU1754681 lncRNA upstream 132124 27330252 ~ 27330716 (+) True G1532769
TU1754680 lncRNA upstream 132317 27330252 ~ 27330523 (+) False G1532769
TU1754846 lncRNA downstream 327447 27805255 ~ 27810891 (+) True G1532920
TU1754849 lncRNA downstream 352271 27830079 ~ 27843859 (+) True LOC110495952
TU1754972 lncRNA downstream 372656 27850464 ~ 27851051 (+) False G1533033
TU1754971 lncRNA downstream 372829 27850637 ~ 27851051 (+) False G1533033
TU1754973 lncRNA downstream 372829 27850637 ~ 27851051 (+) True G1533033
XM_021571473.2 mRNA upstream 5613 27395518 ~ 27457227 (+) False LOC110495939
XM_021571485.2 mRNA downstream 9488 27487296 ~ 27520483 (+) True LOC110495943
XM_036952450.1 mRNA downstream 48644 27526452 ~ 27548466 (+) False LOC110495944
XM_036952452.1 mRNA downstream 52499 27530307 ~ 27548466 (+) False LOC110495944
XM_036952451.1 mRNA downstream 57090 27534898 ~ 27548466 (+) True LOC110495944
XR_005037419.1 mRNA downstream 78595 27556403 ~ 27567412 (+) True LOC118941128
TU1754169 other upstream 705163 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 1519162 25934180 ~ 25943678 (+) True LOC110496782
TU1753186 other upstream 1527882 25934180 ~ 25934958 (+) False LOC110496782
TU1752680 other upstream 1623105 25838506 ~ 25839735 (+) False G1530923
TU1754835 other downstream 158732 27636540 ~ 27651825 (+) True LOC110495947
TU1755008 other downstream 469270 27947078 ~ 27950222 (+) True LOC110495958
TU1755074 other downstream 497005 27974813 ~ 28038476 (+) True G1533121
TU1756511 other downstream 1254967 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other downstream 1254967 28732775 ~ 28734991 (+) True LOC110495972

Expression Profile