RNA id: XM_021571490.2


Basic Information

Item Value
RNA id XM_021571490.2
length 2717
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC110495945
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27573531 ~ 27607434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGAAGAATAGTTATTTGGGTTGTCAGGTGTCAGCAGCAAACTCGATTTTATACGTCTAGCCTATGGATAATTATGGTTGGAATTTTCTTGCGACTTTTTGACCGTAATGAGTATTCATTCGTGtttaacaaatatattttttaatggcaGTTAACGTTCGTGGCCCCTAGACGAGACAACATGCCCAAATTATCTCTGTAAAGCAAACTTAGCCTACTAAAATGGTGTTTCAGAGAAAAAACTACAACAGGACACAAGTATCCTGAATGGCCAGTCATATAGCCTATATATTTTAAGACTTCCAAGAGCGTTGGATGGAAATACACAGAGTGGGCTAGGCTACCTACAGTCGGACTAGCACGAGTTTGACACAACACCTGAACTACTGCGTGCTTCAAAAACACAGCTGATTTTTGAGTTTATCGAAACCTCTGTATGCAACGCTGTCCACCAATTATCTTCAAAATGAATACGATACTTCTGTGTAACTTTGCGAAGTTTATTTTATGCTGGAATGCAGTTTACCTACACGTTTACGCACAGGTTCATCCAGAGGTCGGCCTCACAGCACAGGAGCAGATGTACCTACTGTATGATGTCAAAGTTGAGTGTCATCAGAACATCTCTACACACAACCCTGCAGATTATCTTTGTCCCCCTGGCTGGGATGGTCTTATCTGTTGGCCCCAGGGATCCCCCGGAGCGCTAACCAAGGTCCCCTGCCCCAGCTACGTCTACGACTTCAACCATCAAGGTCATGCATACAGGAAGTGTGACGTCAACGGTTCCTGGGTTTCTGTGGAGGGGTTGAACCGAACGTGGTCCAATTATTCCGACTGCTTGAGATTCCTTTTACCTGGTCAAGAGGAGGAAAAGGACTTCTTTGACCGGCTGTACGTCATGTACACCATTGGATATGCACTGTCCTTCATCTCTCTTCTAGGGGCCATTGTCATCATCGGCTACTTCAGACGCCTCCACTGCACTAGGAACTACATCCACATGCACATGTTCATGTCCTTCATGCTGCGTGCCGTCAGCATCTTTGTCAAAGACAAGGTGGTCCACACCAACGGAGGTCTGCAGGAATTTGACACAGCGCTCATGGACAACTACAAGACCATCTCTGCTAAGCCTCCTGACAAATCCCAGTTTGTTGGATGCAAGATCACTGTGTTGCTCTTCATTTACTTCCTGGCAACCAATTACTACTGGATCCTAGTAGAGGGGCTGTACCTCCACAGCCTCATTTTCATGGCCTTCTACTCGGACACCAAATACCTGTGGGGCTTTACCCTGATTGGATGGGGTGTCCCTGCTCTCTTCGTCGCCGCCTGGGCTGTTGTCCGGGCAACGCTGGCAGACGCACGATGCTGGGAGTTAAGTGCGGGTAACATTAAATGGATCTATCAAGTTCCCATCCTTACAGCTATTGGTcTCAACTTTATTTTGTTTGTGAATATTGTGCGAGTACTGGCCACAAAAATCAGAGAGACGAATGCTGGGAGATATGACACTCGGAAGCAATGCAGGAAACTGGCTAAGTCCACTCTAGTGCTGGTGCTAGTTTTCGGGGTCCACTACATAGTGTTTGTGGGCATGCCACACTCGATCAAAGGGGTCGGATGGGAGGTCCGAATGTACTGTGAGCTCTTTTTCAACTCTTTCCAGGGATTCTTTGTGTCCATTATCTACTGCTACTGCAATGCAGAGGTCCAGGCAGAGATCAAGAAGACCTGGACCCGCTGGAACCTGGTGTTCGACGGGAAGGGACCGGCGGCATGTGCCAACTACCGGTACGGTCTCAACCAGACCTCTACCAGTCAGCCGCAACCGCTGGCCGTGATCTCGGGCACCGCCTCCCTATTCTCCAGCCACGTGTACCGCAGCAGCCAAGCCAGGCACAGCGTCAGCACCCACACCACCTTGCCCGGCTACGTGTTCAGCAACTCTGAGGTGGATAGCCTGCCCCCATCCATCCCAGAGGAGCCAGATGAGAGAGCCAAGCAGGTGGACGACATCTCCCTCCGAGAGTCCTTACCTGTGGTGAATAACACCAGCATAGGAGAGGACTTGGAGGagacactgtagagagagagagtagggggaaaGTGGGAATGTACAGCTGACAAcaattgtgttttatttttttttaatgacaggACAGCGGGAAGGTAGAGCAGGAGATACAAGAATGAGGGCCACAAACAAAAAGTGGCTGAGACCGAACTCAAGACCCGAATCCGCATCGCCAAGGCAATATGTGGTTCGGAGTTGGCAGCCTTACGACTCCGGCAGATATCTTTGATGTTTTGCGgctactatatatcaccatatcCTTATCTTACGCCAGATAGCGCTTAAGATTTCCTGTTTTTTTCTATATGATCATTGGTTCTTATTTTCATGGGCTGTTATTTGTCACTGAGTGGTGGCTAGACAATCAGACAGGTCTGTGGCTAAATATGGACTGGAAGTGCTGCAGCTACAGACTAGTTTGTGTCTGTCATTCGTAATGCTGAGGACAATTACAgttacttcagaaagtattcacaccccttgactttttccacattttgttgtattacaacctgaatttaaaatggattaacttTAGATTGTCACTGATCTACAGTGAAAttgtacatgtctacatgtcagtggaatgatgtttttagacatttttacaaaataataaaaataaagctaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755561 lncRNA downstream 29325 27542785 ~ 27544206 (-) True G1533568
TU1755556 lncRNA downstream 96984 27476285 ~ 27476547 (-) True G1533563
TU1755541 lncRNA downstream 97643 27475296 ~ 27475888 (-) True G1533549
TU1755542 lncRNA downstream 124385 27448536 ~ 27449146 (-) True G1533550
TU1755465 lncRNA downstream 233838 27339456 ~ 27339693 (-) True G1533477
TU1755695 lncRNA upstream 46913 27654212 ~ 27654522 (-) True G1533679
TU1755696 lncRNA upstream 47511 27654810 ~ 27655059 (-) True G1533680
TU1755701 lncRNA upstream 51243 27658542 ~ 27658742 (-) True G1533685
TU1755702 lncRNA upstream 51697 27658996 ~ 27659277 (-) True G1533686
TU1755738 lncRNA upstream 105287 27712586 ~ 27712992 (-) True G1533722
XR_005037418.1 mRNA downstream 47084 27523859 ~ 27526447 (-) True LOC118941127
XM_021571478.2 mRNA downstream 178191 27388709 ~ 27395340 (-) False LOC110495941
XM_021571479.2 mRNA downstream 178191 27388709 ~ 27395340 (-) True LOC110495941
XM_036952440.1 mRNA downstream 209167 27258840 ~ 27364364 (-) False LOC110495938
XM_021571495.2 mRNA upstream 147059 27754358 ~ 27798976 (-) False LOC110495948
XM_021571493.2 mRNA upstream 147059 27754358 ~ 27798978 (-) False LOC110495948
XM_021571501.2 mRNA upstream 200875 27808174 ~ 27819821 (-) True cpb2
XM_036952461.1 mRNA upstream 232471 27839770 ~ 27914605 (-) False LOC110496785
XM_036952462.1 mRNA upstream 232471 27839770 ~ 27914605 (-) False LOC110496785
TU1755360 other downstream 383982 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 385301 27187622 ~ 27188230 (-) False G1533378
TU1753025 other downstream 1864657 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 1999860 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 2050351 25519421 ~ 25523180 (-) True G1531142
TU1755743 other upstream 146875 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 253747 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 427665 28034964 ~ 28036616 (-) False LOC110495955
TU1756202 other upstream 744079 28351378 ~ 28352618 (-) True LOC110495963
TU1758870 other upstream 2677073 30284372 ~ 30284762 (-) True G1536703

Expression Profile