RNA id: XM_021571492.2


Basic Information

Item Value
RNA id XM_021571492.2
length 5581
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC110495947
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27629477 ~ 27750060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGCCTTTGCGTTAGGACAAGGTGCTGGAAGTGGCAGAGCGATAGAAAAGGCTCGAGCGCTAGAGCGGAAAATCATAGCAAGCTACAGTAACTGTCCATTCATACGGAATCCTGTAGCATTTGTTATCATATCAGTATAACACAAAACCTGAGTCCTGAAGTCAATTTGGGGCACTCTACTATCCGAAAGAATGCAGCTTGGCCAGTCAACCCGGTGGGAGTGACCGATAAGGATGGGCCAAAGAAGTAGAGCCCACTGatatAGTCGAGCTGCGGGTCGCACTCGCTATGGCCTCGGCCTACCTGTGGAAGCTGTCGTCCCAGAAGCTGGGCTTCTTCCTGGTGAGCTTTGGATTCATCTGGGGCATGATGCTGCTCCACTTCACTATCCAGCAGCGGGCCACGCACGAGAGCAGCACCATGCTGCGACAGCAGATCCTGGAGCTCAGCAAGCGCTACATCAAGGCCCTGGCCGAGGAGAACCAGAGCGTCATGGACGGGCCCTACGTGGGAACCATGACGGCTTATGATCTGAAGAAGACTCTGGCGGTGCTCCTGGACAACATCATGGTACGGCTGGGCAAGCTGGAGTCCAAGGTGGAGAACATCTACAACGGCACGGGGGCTAACCTGACCAACGGCACCAGCACAGTCACGCCCAGCGCCTCCAATGCAGAGAAGGTCAACGTGGCAGaTCTGCTGAACGGCGCTCAGGAGAAATGTGAGCTTCCCCCCATGGACGGCTTCCCTCACTGTGAGGGCAAAGTCAAGtggATGAAGGACATGTGGCGGTCAGACTCATGCTACACTAACTACGGCGTGGACGGCTCCGCCTGCTCCTTCTTCATATATCTCAgcgagGTGGAGAACTGGTGCCCGCGCCTACCGTGGAGAACCAAGACATTGAATGAGGAGGCCGACCGGAGGGGCCAGACGGAGATCCGAACAAGCTTCGAGGAGCTATATCGGGTCATGTCTCGGCGAGAGGAGTTCCGCTGGATGATGCTCCGGATCAAGCGCATGGAAGACCCCTGGATCAACGCCATCCGCGCCCTGGCTGCCAAGCAGAACCTGGCCAAGCGCAAGAGGAAGAAGATCCTGGTGCACCTGGGCCTGTTGACCAAGGAGTCGGGCTTCAAGATTGCAGAGAACGCCTTCAGTGGGGGCCCCCTGGGGGAGCTGGTGCAATGGAGTGACCTCATCACCACCCTCTACCTGCTGGGCCACGACGTACGCATCTCCGCCTCCCTGGCCGAGCTCAAAGAGATCATGAGGAGAGTGATGGGGAACAAGTCCAGCTGCCCCACCCAGGGGGACAAGGTGGTGGAGCTCATCTACATTGACATTGTGGGCCTGACCCAGTTCAAGAAGACACTGGGGCCCTCCTGGGTCCACTATCAGTGTATGCTGCGGGTTTTGGATTCCTTCGGCACAGAGCCCGAGTTCAACCACGCCCACTATGCTCAGTCCAAGGGCCACAAGACCCCCTGGGGCAAGTGGAACCTCAACCCCCAGCAGTTCAACACCATGTTCCCCCACACGCCAGACAACAGCTTCCTGGGCTTTGTGGTGGAGCAACACCTGAATGCCAGCGACATCCGCCATATTGACGAAGTCAAGCGGCAGAACCAGTCGCTGGTCTACGGCAAGGTGGACAACTTCTGGAAGAACAAGAAGACCTACCTTGACATCATCCACACCTACACGGAGGTGCATGCCACCGTGCACGGTACCAGCACTGTGCACTTGCCCAGCTACGTGAGAAACTACGGCATCCTGAGCGGCCGTGACCTGCAGTTCCTCCTCAGGGAGACCAAGCTGTTTGTCGGCCTGTCCTTCCCCTACGAAGGCCCCGCCCCCCTAGAGGCCATAGCCAATGGCTGTGCCTTCCTCAACCCCAAGTTCACCCCTCCCAAGAGCAGCAAGAACACAGACTTCTTCAAGGGCAAGCCCACCCTGAGAGAGTTGACCTCCCAGCACCCATATGCTGAGGTGTATATTGGCCAGCCCCACGTGTGGACGGTGAACATCGACAACCCTGCGGAGGTGGAGAGAGCCATCCGCTCAATCCTCAGTCAGAAGATCGAGCCCTACCTGCCCTATGAGTTCACCTGTGAGGGGATGCTGCAAAGAGTCAACGCTTTCATTGAGAATCAGGATTTCTGCCATGGCCAGGTGATGTGGCCTCCCCTCAGTGCTCTGCAGGTGAAGCTGGCTGAGCCGGGGTGCTCCTGTAAGAAGGTGTGTCAGGAGGAGCAGCTCATCTGTGAGCCCTCCTTCTTCCAGCACCTCAACAAGGACAAGGACCTGGCCCGGTTCGGCATGGACTGCCAGACGGTGGAGTCGTCGGGCGACACGGTGGTGCCTGCGTACAGCGACGCACGTCACCACTGCGTCTTCCAGTCGGACCTGCTGCTGTTCAGCTGCGCCGGCGCCCACCCCTCCCTCAAACGCGTCTGCCCCTGCCGGGACTACATGAAGGGCCAGGTGGCGCTGTGCAAAGGCTGCCTATAgcccctgtctgtctgggtgtgtggAGAGGATCGAACTGGAGTGGATTGGACCCCGTACCCTTCCAGAGCGCTGcagggaaaaggggggggggggttggggaccTCTAGCTCTGACCACTCAGATGGCTTGACTCCTCCCCCTAGCTCCACACCTGCAGCCTAACTCCTCCCACAGCCAGTCCTCTGGAGGGAGGAAGAGCCGCCTGGGAACTAGACAACCATGagatatttgtattatttatgtcTGTTTTTAATCACCTGAACTTTGACCTTTTTAAGGCATTTTGATCAGCttgtcagacagacacagaatcGGCAGAAAACTGGAAATTCAAACGGTGGACAGAGAGCTATATACATATTCTGGGAACTAGGAATGTCAATGAAACAGTTTCCAGTAAGGCACGGGGCAGGAGGAAAGGAGGGTACAGAAAAGAGACATTGAGCATCAGCCTGAATTACTTGAATCAATGAGAGTCGCTGTATATTTGAGGCGGAGCGCATGGCAACAGAGCTCCCTACTACCCCTAGGCTGTGTGGCAGTGGgtggtactctctctctccaagcttGTAGTCGCATCGTGGGACCAACGAGCTGGTGTGTCGCCACACTCGGCATGCTTTCCTTTCTGCCCCTGTCCCCTTTGAACTATGTCGGTTTGCACTGGAGACCCATAAGGGGCCGTCCCAGGCAATAAGGCTCAATGTCCACACTAGCATACTACTTAGGATGAAACAATGCACAGGGCATGTATTCTGAATGGTATACTCCAATGGAAAGTTGCCCATAGATCCTGATCTATGGTCAGTTTTTATTTTCCCTTATTTATGGTTAAGGTCACGATTGGGGGGAGTGGAAGctaatcctagatctgtacctaagggAAACTTCACCAAAAAGAATGCAAGTGTGAAGAAGAAGCAGAGCCAGTTTTACACTGTAACTGTACCGCTCCCCATAGTAGCGTCTAGACGGGAGTGGTCAGATGTAGATATGTTGATGTTCCAAATCACAAATCACTTTTAATCCTGAGGAATTGTCCCTCGTGGTCATTCCCAACAACAgctcacatacacacagtacatcaTAGCTCCTCTGTAGCCCTGCATGGTAGATTGACCCTCCTCATGTTCCCAATGTGCAGACTAGACACGTTCACTGCCACAGACACCTGACTGACCAGTTGGGATGTGAGCAAAATAATTGCCAGTAGCCAATGAAAAATCATCATTTTTAATGAATCAATTTCAATCAAATGTTTCAATAAATTATTGTCAGATCAGTCACATGCAATAGCTACTTGATGGGAGTCTGTGTGACATAGATTATATAGTGTAGTGGGAAAGGTCACACATGCCCATTGCCTTGACCACAATAGATTTATCTGAAAAATATTCGAAATTATTTAAGATTTAAGATTGATCAAGAATATTTGTATTCTAGATAAGTATTTATGTATACACTAGACTGAAagatcacatacagtacatccataGAAATAACTTTGTAAGTTATAGCTCTTgacagagcaacacacacacctgcaactTTAGTGTACTTGTTTCCTTCATTTGGAGATTGTTTAGGATCCTAATTTGCTTGCCAAGTTTATATTCTTTAAGTGACAATAAAAGTTTGAATTAGTAGTCCTTGTTGTGAATGGaaataatgcactactttaaCAAAATATATGACTAATACTGTATATTCTTCATATGggttttaatttgtttatttattttgtatacaGATATGTTTGCTGAATTGTTTCTTTTTATTTATAGAAAAGTTCTTTTTACAGAGGCTAATTGTATTTATCGAAAAATAATATAACGTGTACATTCAAGTGGATGGATGAGACGGGAGTTGTTTGTCCAATCTGACTCCACCCTCCAGCAACAGtgatgagagagaatgaggaatTAAAGATAATATCCAAATGCTTTGGAAACTTGGCAGCAAAAAAAATCAACTTaaactggtcaaaagtagtacactatatagggaatagggtgtcatttcagacgCACCTTGAGACCGTCCACAAAGACTGATGAAATGTGTTGGTCAGTAGTGACAGATGTcgctctcctctcatcactgtgcTTTcggggtgatgatgatgatgatgacattgGGACAAAAGCAGCGCACACTTTTGATTTTTTTATTGTAAATGCCAGCAAGAACCTCgtgacatttttattttcagaTCTTAATGCAAACCATTTGCACATGTGAAAATATAGATACGTTGTCTTTTAGATGGTCACTTACATTTTATGACTTGCTATTTTTCCCGTTCTGTCCAGATCAGTTTTTATTAAGTTTGTGTATACGATCTGCAGCCAAGCTACCGTTATAAAAAGTACATGACGTGCCTTTTGATGGTTATTACTAGACTTATCGTACCTGCCCAATAGATCTACCGGACCTAGTGCCAGAGAAAATTGTTAGTCGAGTTCACAGTTTGCTAGAAGGATAATGTTTCTTATAACATTAACTGTAAAGGTAAACAGTAATTGTATGTGTTGGACTTTGATGGTTAAAACAAATGTCTTAATGCTGTTGTGGACATGTTTACCGAAGGCTTGTAGTGGGGTAAAATACAGCATATGAAAGCATCTGCTTTTTTTTGTGGCAGTGGCCttgttctacttgtattagagtCAACTATTTCTTTCCTTTCATTGGTTGTTTATAAATGAGTGATCTTGAGAACCAATATAAATAGCCTCCATAATTGTCTATTTGAAATTGGTTTGTCCTAAAATGATAGCTGAAAGGAAGATGTGTTATGGACATGAGAAGAGTTCCTTCAGTCTCTTTAAcccaacatttgaaatgtcttcgtTGTCAAATCTGCATTTGCCTTCATACATATTCATTGACTTTTTTTTCCCACAATCTCAACCTTGTTTTAAGCTATCATGGAAAAGCTAAAGCAGCGATTGTTCTGGGACTAAATTACGactgtacaaaaaaaaaacacattttgttttCAGTTTGACGAATAAGTGGGATATAACTTTATTTTTCAATAAACCTTTTTCTGTGACAAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1754755 lncRNA upstream 159953 27476281 ~ 27476540 (+) True G1532837
TU1754745 lncRNA upstream 183552 27452458 ~ 27452941 (+) True G1532827
TU1754715 lncRNA upstream 251629 27384550 ~ 27384864 (+) True G1532803
TU1754685 lncRNA upstream 297396 27338834 ~ 27339097 (+) True G1532773
TU1754681 lncRNA upstream 305777 27330252 ~ 27330716 (+) True G1532769
TU1754846 lncRNA downstream 55195 27805255 ~ 27810891 (+) True G1532920
TU1754849 lncRNA downstream 80019 27830079 ~ 27843859 (+) True LOC110495952
TU1754972 lncRNA downstream 100404 27850464 ~ 27851051 (+) False G1533033
TU1754971 lncRNA downstream 100577 27850637 ~ 27851051 (+) False G1533033
TU1754973 lncRNA downstream 100577 27850637 ~ 27851051 (+) True G1533033
XR_005037419.1 mRNA upstream 69081 27556403 ~ 27567412 (+) True LOC118941128
XM_036952450.1 mRNA upstream 88027 27526452 ~ 27548466 (+) False LOC110495944
XM_036952452.1 mRNA upstream 88027 27530307 ~ 27548466 (+) False LOC110495944
XM_036952451.1 mRNA upstream 88027 27534898 ~ 27548466 (+) True LOC110495944
XM_021571485.2 mRNA upstream 116010 27487296 ~ 27520483 (+) True LOC110495943
XM_021571497.2 mRNA downstream 70508 27820568 ~ 27829342 (+) True alg11
XR_002469493.2 mRNA downstream 79895 27829955 ~ 27831905 (+) False LOC110495952
XM_021571503.2 mRNA downstream 175722 27925782 ~ 27931338 (+) False si:dkey-1h24.6
LOC118941047 mRNA downstream 187972 27938032 ~ 27940798 (+) True LOC118941047
XM_021571508.2 mRNA downstream 193313 27943373 ~ 27947177 (+) False LOC110495958
TU1754169 other upstream 878816 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 1692815 25934180 ~ 25943678 (+) True LOC110496782
TU1753186 other upstream 1701535 25934180 ~ 25934958 (+) False LOC110496782
TU1752680 other upstream 1796758 25838506 ~ 25839735 (+) False G1530923
TU1755008 other downstream 197018 27947078 ~ 27950222 (+) True LOC110495958
TU1755074 other downstream 224753 27974813 ~ 28038476 (+) True G1533121
TU1756511 other downstream 982715 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other downstream 982715 28732775 ~ 28734991 (+) True LOC110495972
TU1756570 other downstream 1053968 28804028 ~ 28804673 (+) True G1534488

Expression Profile