RNA id: TU1755743


Basic Information

Item Value
RNA id TU1755743
length 2285
RNA type TUCP
GC content 0.47
exon number 7
gene id LOC110495948
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27754174 ~ 27798978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCGTTGAAATGAATGGGAAGTGGTGTTTCACCGCACGGCATCCTGTGCTAATTGGAACCGCAATTTAGAACAATGACGGACTCAACAGCCTCAGACCGGGTGAACACCATCCCGGATCCAATTATTGTCGATCAGTCGACTGTAAACGGACAGTGCGACCCGAAACATcaactgtcacccaaaatcaacaGCCACCCTAAATTCAAGATGGACCAGGAGATGAAAATTAGCGATAGCGTGGAGGGGCAAGGCTTACTGGAGAGCAGCATGAGGCTGAAGCCCCACGAAGCTCAAAGATACCGCAAGAAAGCGTTGTGGGTCTCCTGGGTTTCCATCTTTGTGACGCTGATCCTGGCAGTAGCAGCTTTCAagccTGTGTGATCCTGGGTGTGGTCTTCATCCTGTCCTCCCTGTGTATCCTGGGAAAGGCAATCCATGACCTGGCTACCAAGCTAATGCCTGAAGTGGATGACTTCCTCTTCAGTGTGTCCATCGTCAGTGGCGTGATGTGTGTCATTCTGGCCGTGGCCAAGTTCATGCTGGGTAGGGTGCTCACCAGCAGAGCCCTCATCACAGACGGTTTCAACTCCCTGGTGGGCGGGGTCATGGGCTTCTCCATCCTAATCAGTGCCAAGGTGTTCAAGCACGATCCCAAAGTGTGGTACCTGGACGGGTCCATAGGGGTCCTGATAGGCCTCATCATCCTGGCCTACGGGGTCAAGCTGCTGGTTGATATGGTCCCTCGAGTGCAACAGACAAGGAACTACGAGCGCTTTGAGTGACAGAAGACCACGGAAGGGCAGTGAGGGGGATGGGTTCTGTGTTATATACGGTAGAAGTACATCCAGTGTCTGTTCTAGGGTATGTATATCTACGCCCAGTCCCTATCCAGCTCAGCTCCATTCTTCCTGGTAGAGCTCTCCAGTCACCATGACAAACCTATTGATTGGTTTAGACCTCAAGGTGCCAGCCCACTGGTGTTTTAGTTAGACCCAAGTGGTCCATTTTGCAGCGTTCCTCCGGTCTCTCTAACTCCGAACCTGATCCGTCCATATGAGTCATTACAAAGTCAAAGAGAAGACTGAGGTTTCCCTCTATAGCTCCTTCTCTACTGAAGCAGGGGGAGGTGGAAGGACAGAACGTGCGCTGCTGAGTCGTCAGGAAATTGTCACTGCCTCTACAAAGGCACTGCACCGTCTCCACTGATTAGTCTGGTGTTCGTTCATATCTCTATCTCCCCTTGGACAACATGGCTGATTCAGATACGCATTGTAGGATCTCAGTCCTTATGGGATTTCAATGGTTTCTAATAGGCGCTTTCTTTTGATGAGTAACACTgtgagtgtgtcccaaatggcaccctattccctttatagggtactacttttgaccaccctattccctttattgcactacttttgaccatggcccattaAGTGCATCAATTAGGGTGGCATTTAGCACATACACCTATTTCTGTTTGACACCACTGTTCAAAGTAGATGTGTTGCTTTTATGTAGTCATGATGtagtaggggtggcaggtagcctagagagcattgggccagtaaccgaaagcttgctcgatcgaatccccaaggtaaatctgttgttctgcccctgaacaaggcagttaacccactgttcctaagtagtcactgtaaataagaatttgttctttaacatacttgcctagttaaataaagtatcACTTAGGATGGTAGTTGCAACTATTAGTAGCAGTAGGACATGTTTTCTATCCCCCCAAAAACAGCAGGGAAAATAGATTTCTGAGATGCCCATTGTAGACAGGCTGTAGTATGGAGGACAATAGTACAGCAGTACAGTATGTGCAACATGACAGAAGACTCatcttgtgtcccaaatggcaccccattccctacatagtcactatggaccctggtcaaaagtaatacactatagggaatagggtgctatttgggacaaaaCCTGTATCATTTGATTAGTGAATATGAAAGCACAAATGTCCCTGTCGCCAGCTCATGTATGGAATTGGTGTTTGCTTTATTGCTTAAGGGGTGTTGAATAAAAGCTTGTGGCAGACCATCAACAAACAACATGACTGGAGCCAAAGACTCTAGCCAGAGGTTACTAATCTGGAATTAAAACAAGCCTTTCTGTGCACTACAGCCAAATCTGTTGGCTAGAACACAACAAGTCGTCCCTTTTTAGGCCATTCCCTCTTCTTTAATTCCTTAACAAAATCTGAGGGGGTAAATGCGGTCTTCCTGGCAAGTAAAT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755738 lncRNA downstream 41182 27712586 ~ 27712992 (-) True G1533722
TU1755702 lncRNA downstream 94897 27658996 ~ 27659277 (-) True G1533686
TU1755701 lncRNA downstream 95432 27658542 ~ 27658742 (-) True G1533685
TU1755696 lncRNA downstream 99115 27654810 ~ 27655059 (-) True G1533680
TU1755695 lncRNA downstream 99652 27654212 ~ 27654522 (-) True G1533679
TU1755799 lncRNA upstream 32360 27830973 ~ 27833037 (-) True G1533783
TU1755869 lncRNA upstream 127679 27926292 ~ 27926680 (-) True G1533845
TU1755884 lncRNA upstream 147056 27945669 ~ 27945957 (-) True G1533860
TU1755848 lncRNA upstream 243320 28041933 ~ 28043487 (-) True LOC110495955
TU1755992 lncRNA upstream 325999 28124612 ~ 28125902 (-) True LOC110495961
XM_036952454.1 mRNA downstream 146740 27574154 ~ 27607434 (-) True LOC110495945
XM_036952455.1 mRNA downstream 146759 27573531 ~ 27607415 (-) False LOC110495945
XM_021571490.2 mRNA downstream 146875 27573531 ~ 27607299 (-) False LOC110495945
XM_021571487.2 mRNA downstream 146876 27573531 ~ 27607298 (-) False LOC110495945
XM_036952456.1 mRNA downstream 146876 27573531 ~ 27607298 (-) False LOC110495945
XM_021571501.2 mRNA upstream 9561 27808174 ~ 27819821 (-) True cpb2
XM_036952461.1 mRNA upstream 41157 27839770 ~ 27914605 (-) False LOC110496785
XM_036952462.1 mRNA upstream 41157 27839770 ~ 27914605 (-) False LOC110496785
XM_036952458.1 mRNA upstream 41157 27839770 ~ 27914606 (-) False LOC110496785
XM_036952460.1 mRNA upstream 41157 27839770 ~ 27914606 (-) False LOC110496785
TU1755360 other downstream 564625 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 565944 27187622 ~ 27188230 (-) False G1533378
TU1753025 other downstream 2045300 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 2180503 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 2230994 25519421 ~ 25523180 (-) True G1531142
TU1755806 other upstream 62433 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 236351 28034964 ~ 28036616 (-) False LOC110495955
TU1756202 other upstream 552765 28351378 ~ 28352618 (-) True LOC110495963
TU1758870 other upstream 2485759 30284372 ~ 30284762 (-) True G1536703
TU1759222 other upstream 2721279 30519892 ~ 30525373 (-) True G1537022

Expression Profile