RNA id: XM_021571501.2


Basic Information

Item Value
RNA id XM_021571501.2
length 2562
RNA type mRNA
GC content 0.45
exon number 11
gene id cpb2
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27808174 ~ 27819821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagatctctctctctctctctctctctctctctctcatgttaaCCAAACATCTTGCATAAGTTTTGGACACATTAAACATGAAGGCTCTTCTAATATGGGCTGTTTTACTGAACTTTTACAAGCTCCCTAAGACGGGTGACTGCGCTTCAACACATGACCAAGTTCTCTCAATCCAAGTCACAACACATCAACAAGCAGATATTGTGAAGAACATATCCAGCCAATATGAGACAGTTTTGTGGTCACCTACTTCACCTGAGTACATCGGAGCACACACTGAGGTGCACCTGTTTGTTCCTGCCAACAAATTGGGGACTGTCACAGACCTGCTGCAGACACACCACCTAACACACCAagtgctactggacaacacagaggaacTGATCGAGATGCAGACCAGGAATGAATCGTCGGACCCTAGAAGCAGTGCATCTTATTATGAGAGATACCATTCTCTGGAGGACATCTACTATTGGATCAACAAGACTGCCCAGGACTACCCAGACATGGTCAAAGTCACCCTGATTGGCTCATCATATGAAAAACGCCCACTTTACGTTCTCAAGTTGTCTGGACGACAAGAGAGAGCTGAAAAGAGAGCAATATGGATTGACTGTGGCATTCATGCTAGAGAGTGGATCTCCCCAGCTTTCTGCCTGTGGTTTGTGCAATATTCCTTGAACTTCTATAATCTAAACAATGACATCACTGAGATGCTGAACAGTATGGACATCTATGTGCTGCCTGTCATGAACCCGGATGGATACAAGTACACATGGACAACGAACCGAATGTGGAGAAAGAATCGTTCCATGAGCAAGGAAAGCAACTGTGTTGGAACCGACCTCAATAGAAACTTTGACGCAAACTGGTGCACAAAGGGAGCCTCCAACAGGCCCTGTGATGAGATATACTGCGGCCAGTTCCCAGAGTCGGAGCCTGAGGCAGAAGCCGTGGCTAACTTCTTGCGCAGCCACAAAGACTCAGTAAAgctctatctctccatccattcCTATGGTCAGATGCTGCTCTTCCCATACTCCTGCTCCAATGAGGAGGTGCCTAACCACGCCGAGTTGtttGAGCTTGTACAGGAGGCAGCCATGAAAGTCAGAAGATACTACAGGAACAACTACAAATACGGCGCATCAGCAAAAACAATATACTTAGCTCCTGGAGGTTCTGACGACTGGGCCTACAACCTGGGCATCCACTACTCCTTCACTTTTGAGCTGGAGGACCGTGGTCGATATGGTTTCCTCCTACCGCCATCATTAATCTCCAAGGCCTGCAATGAAGCCCTCCTCGCTCTTAAGAGTATCGCTCTCAGAGTCATTCAGAaaacacaaccccaaccctaacacgGAACGtgtgtgcgccatcgtgcataaatgtattttgtccccccacaccaaacgctatcacgacacacaggttaaaatatcaaaacaaactctgaaccattgatattaatttgggaacaggtcgaaagcattaaacatgtatggcaatttagctagctagcttgcacttactagttaatttgtcctatttagctagcttgctgttgctaccTAATTTGTCctaggatataaacattgagttgttattttacctgaaatgcacaaggtcctctactccgccaattaatccacacataaaacggtcaaccgaatcgtttctagtcatttctacaccttccaggccttttcttctcttgactttataatgcgattggcaactttcataaattaggtgcattaccgccactgacctcgttcgtctttcagtcacccacgtgggtatcaccaatgaggagatggcacgtgggtacctgcttctataaaccaatgaggagatgggagaggcaggacttgcagcgcgatctgcgtcagaaatagaactgacttctattttagcccttggcaacgcagacgctcgttggcgggcgcgagcagtgtgtgtgcaataattgaataacatggatttctacatttattttgcaacgctggCGCACGCAACGAGAGCAGTGTAGTCAGCCTGCAACCCTTTATGCCCCTGAGAAGTTGTCTGTGAAAACCTGAGCAGTTTCACATCTGATTTTGTCCAAAGTAATCCCTTTTATCAAAGTATGttttgtgtgcgtgtctgtcaaACATGATTGTAAATTGTATCATCATTTTGTGTTTTTAAGGAGTAGGGCAGTCCCAATCATGACATAATGAGTTGTttgttggaggagaggagagacgggggagagagtgCTGAAATAGCAATGGGTCTGATGTGAACCCATGCAGCTGCAAGTGGTGTTCCATGGGCAGCGTCTTAGACCGCTAGGCCAGCCTAGTGTCACCCTAGCACAGCATTCATGTTTTTGTAGTAAGAAATCATAGACACTTTGTTTTATTCCAACTGTATATCCTCCTACAGCTTTGAAGCTTAAAACTATAATTGTGTTGACAGTTCTCTGTGTGTAGGCTTCTAATGGTGTAACAAGATGAATATTCCAACAGAAAACAATAATGAAATTAGATATTTAAATGTTGATGTTTTGGCC

Function

GO: NA

KEGG:

id description
K01300 CPB2; carboxypeptidase B2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755738 lncRNA downstream 95182 27712586 ~ 27712992 (-) True G1533722
TU1755702 lncRNA downstream 148897 27658996 ~ 27659277 (-) True G1533686
TU1755701 lncRNA downstream 149432 27658542 ~ 27658742 (-) True G1533685
TU1755696 lncRNA downstream 153115 27654810 ~ 27655059 (-) True G1533680
TU1755695 lncRNA downstream 153652 27654212 ~ 27654522 (-) True G1533679
TU1755799 lncRNA upstream 11152 27830973 ~ 27833037 (-) True G1533783
TU1755869 lncRNA upstream 106471 27926292 ~ 27926680 (-) True G1533845
TU1755884 lncRNA upstream 125848 27945669 ~ 27945957 (-) True G1533860
TU1755848 lncRNA upstream 222112 28041933 ~ 28043487 (-) True LOC110495955
TU1755992 lncRNA upstream 304791 28124612 ~ 28125902 (-) True LOC110495961
XM_021571493.2 mRNA downstream 9196 27754358 ~ 27798978 (-) False LOC110495948
XM_021571495.2 mRNA downstream 9198 27754358 ~ 27798976 (-) False LOC110495948
XM_036952454.1 mRNA downstream 200740 27574154 ~ 27607434 (-) True LOC110495945
XM_036952455.1 mRNA downstream 200759 27573531 ~ 27607415 (-) False LOC110495945
XM_021571490.2 mRNA downstream 200875 27573531 ~ 27607299 (-) False LOC110495945
XM_036952461.1 mRNA upstream 19949 27839770 ~ 27914605 (-) False LOC110496785
XM_036952462.1 mRNA upstream 19949 27839770 ~ 27914605 (-) False LOC110496785
XM_036952458.1 mRNA upstream 19949 27839770 ~ 27914606 (-) False LOC110496785
XM_036952460.1 mRNA upstream 19949 27839770 ~ 27914606 (-) False LOC110496785
XM_036952459.1 mRNA upstream 19949 27839770 ~ 27914607 (-) False LOC110496785
TU1755743 other downstream 9561 27754174 ~ 27798613 (-) True LOC110495948
TU1755360 other downstream 618625 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 619944 27187622 ~ 27188230 (-) False G1533378
TU1753025 other downstream 2099300 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 2234503 25573438 ~ 25573671 (-) True LOC110495915
TU1755806 other upstream 41225 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 215143 28034964 ~ 28036616 (-) False LOC110495955
TU1756202 other upstream 531557 28351378 ~ 28352618 (-) True LOC110495963
TU1758870 other upstream 2464551 30284372 ~ 30284762 (-) True G1536703
TU1759222 other upstream 2700071 30519892 ~ 30525373 (-) True G1537022

Expression Profile