RNA id: XM_021571497.2


Basic Information

Item Value
RNA id XM_021571497.2
length 2838
RNA type mRNA
GC content 0.52
exon number 5
gene id alg11
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27820568 ~ 27829342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTCACCGAGGTATAATAAGAACGGACGCGCTAACCTCAAATAAAAACCAATAGTGAACTCGCAGCACAAACATTTCCGGTTTGGAGGTTGTGTTGTCAAGATGTCTGTCCATGATCAACTTGCTCAATGTTTGTGTGATCTAATCAgGTTGTTGTGGACATTGCTTCTGCCATGCGTGTTTCTGTGCATGCTCCTGACCGCCACCCTGGTCGTGCTTGTCATGGGGGTGCGCGTGTGGCTGCAGGCAAACAGGAACGCACGGCGAGCGCGTGATGGGCGTCCCACGGTGGCTTTCTTTCACCCGTACTGCAACGCGGGAGGTGGTGGTGAGAGAGTGCTGTGGTGTGCCCTCAGAGCTTTGCAGAATAGGTACCAAGATGTCAACTTCATGGTGTACACGGGCGACCAGGGTGTGACGAACCAGCAGATTCTTGATGGCGCCCGGCGGCGCTTCAACATCCTTTTACCTCGACCCGTCCAGTTTGTCTTCCTCAAACACCGCCTGTTGGTCGAGGCCAGCCTCTTCCCCCACTTCACTCTGATTGGTCAAAGTGTAGGCTCAATCTTCCTTGGTTGGGAAGCCCTTACGGAGTTTGTCCCAGATGTCTACATCGACTCCATGGGTTACGCCTTCACTCTGCCTGTGTTTAAATACCTAGGGGGTTGTCACGTGGCTAGCTACGTGCACTACCCCACCATCAGCACAGACATGCTGTCGGTGGTGCGCGAGAGGAACCCCAGGTTCAACAACGCAGACTACATCTCCAACAACCTGTTCCTGAGCGCGGTCAAGGTTGTCTACTACTGCCTGCTGGCGCTGCTCTATGGTCTGGCCGGCTCCTGCAGCGACGTGGTCATGGTCAACTCCAGCTGGACCCTGAACCACATCCTGACCCTATGGCGAGCGACCAACCGCACCTGCCTAGTCTTCCCGCCCTGCGACACCCGCGCCTTCCTCCAGCTCCCGTTGGACGAGGACTCGGACCGGAAGTGCCATTCCATCGTTTCCATTGGTCAGTTTCGACCGGAGAAGGACCATCGGCTTCAGATTCGCGCCTTCCGGAAGGTGCTGCAGAAGAAAGAAGCGGGGCTAGTTGCGGGGCCGGGAGGAAGGGAGTCGCTGAGGTTGGTGCTGATTGGTGGATGCCGGAACCAAGAGGATGAGGATAGGGTGTTGATGCTGAGAGGTCTGTGCCAGGAGCTGGGCGTGGCGGACAGGGTGGAGTTTAAACTCAACGTGCCGTTTGAGGAGCTGAAGAGGGAGTTGGGGGAAGCTACGGTGGGACTGCACACCATGTGGAACGAACACTTCGGGATAGGGGTGGTGGAGTGCATGGCGGCTGGGACCGTCGTCCTGGCCCACAAGTCTGGAGGCCCCAGGCTGGACATTGTGGTGCCCTACGAGGGCCGCCAGACGGGCTTCCTGGCCGAGGATGAGGACGGCTACGCAGACGCCATTGAGCGCATCCTGGCCCTGTCACCCTCGGCCCGCCTGGAGATCCGACGCAACGCCCGCCTCTCGGTCACCCGCTTCTCCGACCAGGAGTTTGAGGCCTGCTTCCTGGCCGCCATGGAGCCTCTCATGGGGACACTGGAGCGATGAGGGGGGGTGGGTGGAAGTGTGTCACGCTCATGGGTGTGCGCGTGCATGCATACTAGCCATTCTTTTAGTTGACATAGGATACAGTTTGTGTTAAAATGCACCAGGAATACGTTGACTTAAATGAAAGATGTATTTATTGACATGTCAGTCCAGGCGTCCACTCTCTTTCTAGAGGGtcttaaatgttttgtttttgttttgttttcaagACCATTGTATTTTGTACTTGAGGCATAAGATTAGTGCTCGTCTAGCCTCCCAAGTTCCCCGTCTCGATTGTCAACGCGTACAGAGAGCCGGCTGGTAGACTAGATTAGTGCTCGTCTAGCCTCCCAAGTTCCCCGTCTCGATTGTCAACGCGTACAGAGAGCCGGCTGGTAGACTAGATTAGTGCTCGTCTAGCCTCCCAAGTTCCCCGTCTCGATTGTCAACGCGTACAGAGAGCCGGCTGGTAGACTAGATTAGTGCTCGTCTAGCCTCCCAAGTTCCCCGTCTCGATTGTCAACGCGTACAGAGAGCCGGCTGGTAGACTAGATTAGTGCTCGTCTAGCCTCCCAAGTTCCCCGTCTCGATTGTCAACGCGTACAGAGAGCCGGCTGGTAGACTAGATTAGTGCTCGTCTAGCAAGGACTGGACACAACTGATTTTGATGGCATTCCAGGTTGTCTTTTTTTCAGTCAAACTACAAATATCAGAAGATTAAGATAATTAGGTGGGTGCTTACATTTGTATTATTTCACACGTGTGAATTGGAAATTGTTTATATCCCACCCAGTCAGGGATCAGCCGTTATTGACGGCAACCCTGGAGCAGTTGCCTCGCTCACGGGCATGTCAACATatttttttcacctagttggctcgggatttgaaccagcgacctcttactggcccaacgctcctaaccgctaggctacataTAGTGTTTAATGTGGTTCTTGGGATGTGAAACATCTCTAGGCATTGTGAGATCTGATCTCTTGTGTAGTGTGACTACAAAAAAAAGACTACCTGGAATGACAGCAGTATCTGACTGTCTTTGATGATGACCAAACTCTGTTCGCTGACATCAGCGAGAGGGTGGTGATGAGCCTGTAGAGACTAACTTTACAATTCTGATGACTGCTGTGATAATTAACATTGTTACTTAACATTTTTAAATAACTAGAAATGCCGTTCTGTATCCTAAGTaggaagtattttttttttttatattaaaacatttataaaata

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004377 GDP-Man molecular_function

KEGG:

id description
K03844 ALG11; alpha-1,2-mannosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1754846 lncRNA upstream 9677 27805255 ~ 27810891 (+) True G1532920
TU1754755 lncRNA upstream 344028 27476281 ~ 27476540 (+) True G1532837
TU1754745 lncRNA upstream 367627 27452458 ~ 27452941 (+) True G1532827
TU1754715 lncRNA upstream 435704 27384550 ~ 27384864 (+) True G1532803
TU1754685 lncRNA upstream 481471 27338834 ~ 27339097 (+) True G1532773
TU1754849 lncRNA downstream 737 27830079 ~ 27843859 (+) True LOC110495952
TU1754972 lncRNA downstream 21122 27850464 ~ 27851051 (+) False G1533033
TU1754971 lncRNA downstream 21295 27850637 ~ 27851051 (+) False G1533033
TU1754973 lncRNA downstream 21295 27850637 ~ 27851051 (+) True G1533033
TU1755050 lncRNA downstream 92263 27921605 ~ 27923875 (+) True G1533099
XM_036952457.1 mRNA upstream 70508 27629477 ~ 27750060 (+) False LOC110495947
XM_021571491.2 mRNA upstream 70508 27636493 ~ 27750060 (+) False LOC110495947
XM_021571492.2 mRNA upstream 70508 27636493 ~ 27750060 (+) False LOC110495947
XR_005037419.1 mRNA upstream 253156 27556403 ~ 27567412 (+) True LOC118941128
XM_036952450.1 mRNA upstream 272102 27526452 ~ 27548466 (+) False LOC110495944
XR_002469493.2 mRNA downstream 613 27829955 ~ 27831905 (+) False LOC110495952
XM_021571503.2 mRNA downstream 96440 27925782 ~ 27931338 (+) False si:dkey-1h24.6
LOC118941047 mRNA downstream 108690 27938032 ~ 27940798 (+) True LOC118941047
XM_021571508.2 mRNA downstream 114031 27943373 ~ 27947177 (+) False LOC110495958
LOC110496786 mRNA downstream 645007 28474349 ~ 28479668 (+) True LOC110496786
TU1754835 other upstream 168743 27636540 ~ 27651825 (+) True LOC110495947
TU1754169 other upstream 1062891 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 1876890 25934180 ~ 25943678 (+) True LOC110496782
TU1753186 other upstream 1885610 25934180 ~ 25934958 (+) False LOC110496782
TU1752680 other upstream 1980833 25838506 ~ 25839735 (+) False G1530923
TU1755008 other downstream 117736 27947078 ~ 27950222 (+) True LOC110495958
TU1755074 other downstream 145471 27974813 ~ 28038476 (+) True G1533121
TU1756511 other downstream 903433 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other downstream 903433 28732775 ~ 28734991 (+) True LOC110495972
TU1756570 other downstream 974686 28804028 ~ 28804673 (+) True G1534488

Expression Profile