RNA id: XM_036952460.1


Basic Information

Item Value
RNA id XM_036952460.1
length 4366
RNA type mRNA
GC content 0.61
exon number 16
gene id LOC110496785
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27839770 ~ 27914607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACACTGGGTTGGAGAGGTACTTGCTCACTCCCAGGATAGCGCTGTTGATTAGTCGAGCCTAATTCTGGGCTGGACAGGAAACAGGAGACGCTTGGCGTGCCTCGCGCAACAATCCTGGGAAAGAGAATGAGGATGGGAATATGTATGTATTTTCACGACGAGCGGTTAGTTAAAAAAAGATGAGGACAACGGGCACTACAATTGTTTCAACTGTTTCACAGAAGCGTGTTATTTGGACCATTAAGTTTTTGGAACAAATACCGTGATTACTGCGTTTGGTTTTCATCAATCATTGGTGGGAATACAGAAGAGGAGCCGCTGTTAAAATCCCAATTTGACTggCATAAAAGCTTGGTCCTGACTGTTGCGTTGGCTTCATTTGACCTTTTTGACCTGAGtgggacaaagggagagagacaccagagATGGCGGATATGTCTGACGATGAGCTGGACCACGgggcagaggaggaggacagtgatAAGGAAGACCAGGATCTGGACAAAATGTTTGGAGCCTGGTTGGGAGAACTGGACAAACTCACACAGAGTCTGGATGACGGGAAGCCACAGAAGTCGGTCCAGAAGGCCCCTCTCAGACAGGAAACCAACATGGCTAACTTTTCGTACCGCTTCTCCATGTACAACATCAACGAGGCTTTGAACCAGACGACAGAGACCGTAGACCTGGATGCCCTGATGGCTGACCTGTGTTCCATAGAACAGGAGCTCAGCACCATCGGCAAGCCCAACACCGGCACCGCCCGCCAGGCTAAATGTCAACAGCGATGCCCGGGGGGTCGCAGCGCCAGTGTCAAGCAAACTGGCAGTGGTGGGGGGAGTAGCAGCGGGGGCAGCACTAGCAGTAGTACCCGGGCCTCACCGGCCTCCACCGTCCGAGGGGGCAGCTCCAACTCCCACGGGCGCCCGTCGGCATCGAACCTCTCGCTGGACGACATCACGGCCCAGTTGGAGCAGGCGTCACTCAGCATGGATGAGGCGGCGCACCAGACTTCTTCCTCCTACTCCTCGACCACCCTCCGGCGCTCCTCGGCAGGTTCCTCGTCCTCGCAGCACCGGAGGACGGGCTCGGTGGGCACGGTTAGTGAACACGAGGCGGGGGGCCACTCCTCGAGGTCCAGTGTTAATTCTGCATCCGCGTCCAGCATGGACTCTCTGGATATCGACAAGGTGCTGTCTAAGACAGTAGGAGGGCCCGAGCAGGACGGGGGTTCACAAGGCCCCCAGCCGCCACAGGGCCCGGCCAGTACTGAGCATGCCTCACTACTGCGACGGGCCAATGGTAAGCCGGCCAGACGGCAGCTTGACTTCACCTCACGGGAGGGTGAAGTGGATCTGGacactGAGGAGCAGGGTGCCAAAGTGAAGGCCGAGAAGATCCGAGTGGCCCTGGAGAAGATCAAGGAGGCGCAAGTCAAAAAGCTGGTGATCCGGGTGCACATGTCGGACGAGAGCTCCAAGACCGTGATGGTGGATGAGAGACAGACTGTCAGACAGGTGCTGGACAGCCTGCTGGACAAGTCCCACTGTGGCTACAGCCCCGACTGGGCACTGGTGGAGACCATCAACGAGCTGCAAATGGAGCGGATCTTTGAGGACCATGAGAACTTGGTGGAGAACCTACTGAATTGGACCAGAGACAGCCATAACAAACTGATGTTCATCGAGCGCATCGAGAAATATGCCCTCTTCAAGAACCCCCAGAACTACTTGTTGGGGAGGAAGGAGACCTCTGAAATGGCCGATAGGAATAAAGAGGCCCTACTGGAGGAGTGTTTCTGTGGCAGCTCGGTTTCGGTACCAGAAATAGAGGGAATCCTATGGCTGAAGGATGACGGGAAGAAGTCGTGGAAGAAACGATACTTCCTGCTGCGCGCATCAGGGATCTACTACGTGCCCAAAGGCAAAGCTAAGGCCTCCCGGGACCTGGTATGCTTTCTACAGCTGGACCACGTTAATGTGTACTACGGCCAGGACTACCGCAGCAAGTACAAGGCCCCCACAGACTACTGCCTGGCCCTTAAGCACCCCCAGATCCAGAAAAAGTCCCAGTACATCAAGTATCTGTGCTGTGATGATGTCAGGACCCTCCACCAATGGTTCAACGGCATTCGCATCGCCAAGTACGGGAAACAGCTGTATGTGAACTACCAGGAGGCCATGAAACGCACGGAGGCGGCCTACGACTggtcctccctctccacctccagcatCCGCTCTGGCTCCAGCTCCGGGTCAGCCAGTCTGCCCGAGTCCCAGTCGAACCACTCGGGCCAGtcagacagtggagtggacacGGCCTCCAGCCACGGGCGCTCCCAGAGCGTGGTCAGCTCCATCTTCTCTGAGGCCTGGAAGAGAGGAACGCAGATGGAGGAGAACACCAGGATGAGGGAGTCCACCAGAGGCGCCACCCTCCCCCACCCTGTCCTTGCGCACCGCCAGACCCCACAACTGGAGCCCCCTGCGTCGGCTACGCCGCCACAACAGCAGCCGCCTCCCCAGTCTCGCAGCAGCTACACCCATGCTGCACCCCCCCAGCCACAGGAGGGCACCTCCCCCCTGCTTCAACAGCAACTGCCCCCCCAGATCCGCAGCGGTTACACCCAGTCCATGTCCCCTCAGCCATCCCCTCCGCCACCCCAACAGCTGCCCCCCCAGATACGCAGCAGTTACACCCAGGTCCTGCCTTGCCTGCCCCGCCagccctcccctccaccaccccaaCAGCTTCCCCCCCAGATCCACAGCAGTTACACCCATGTCCTGCCTCCCCAGCCCTTCCCTCCACCACCCCAACAGCTGCCCCCCCAGATCCGCAGTAGTTACACCCAGGTCTTGCCCTCTCTGCCCTCCCCTACACCACCCTCCCTGCCCCCCCAACTTTCTCCACCAGCCCAACAGCTGCCCCCCCACATCCGTAGCAGTTACACCCAGGTCTTGCCCTCCCTGCCGCCACAGCCCTCTCCTGCACCACCCCaacagctgtccccacagccctgCAGCAGCTACAACCAAGCTgtaccccctccacccccacctccccCGCCGCCCCCTCCCCCGCCCCCTCCTCCCCCGCCGCCCCTGCCTGCCAGCAGCACCCCCCACCACTCGGGCCCCACCGTGTTCGCCAAGTACAGCACCATCACCCGGCTGCAGAACCAGAACGCCGCCCACCAGGCCGCCAATCTCCATAGGGCGCAAAACAACCACCAGAGCCCACCAAGGGTGCTAGCTCAAGCCCCGCCTCCTCCCCATCAGACGGCTGTCAAACCGCTGGTCAACAACATCAATGTCCCGCCTCCCccgcctccccctcccccaccatccATGCCTGCCCTGGGGTCGGCCATGGCCGCACTCCGGCTCGGGCCCCCCACCCCGGCTGTCGTGCCCCAGTTCATCCCACCGCCGCCGCAGAGCAACGacatcccccctccccctcctcttcacccAGACACCATGCCAGGTCTGTGTACATCGCGCTACGGCGCCAACACCCTCCAGCAGGCACTGGCCCAGAAGTTCCCCAGCGGTCCCCCCCAGGGCCCCTCTCCCTCCACTGCCAGACTGGTCGAGTCGCCCCTGGCAACGCCTCCGCCTCCCCAGCAGCTCTCGATGCcgacaccccctcctcctcctcccccaccacctccccctcctacccCACCGCCTCCCCAGCAGGTCTCGGTGCtgacaccccctcctcctcctccgcccccccccacctcctccccctcctacccCACTGCCTCCCCAGCAGCTCTCGGTGCtgacaccccctcctcccccaccgcCTCCCCAGCAGCTCTCGGTGCAGACACCCCCTtttcctcccccacctcctcagCAGCAGTACTCGCCCGCAGCTGCTCCCCCCACTGCCCTACCCAAAACCTTCTCCCCAGGCTTTCTGCTCCACCATGGTGCCCAGAAGCCTCCCTACCCagtttcccctctccctcccaccccaccTGCTGCCCCAACTCCTCCCCCACCACCGCCTCCGCCGGTGTCAATGAAGAAGCAGCACAGCCTACAGATAGGCCACACCCCCAACCAGCCCCCTCCCACATTTCCCAAGCAGCACAGCCTCTCCAAGCCGCCACCCCTGTCCTTCATGGCTCCGCCCACCACCACCtctctggtcaaacagatggcaGGCCAGTTCCCAGGGTCCACACTGTCTACCAATCACACTGAGAGCCCCAAAGCCCCCCTGTCTCCTCCTGCGGTGAAGGCCAAACCAAGATGGCAGCCAGGTGGTGGACAGGCCCAGCAACAGGCCCCAGAGTTCCCTCCACCCCCTTCTGAGAGCAGCCTGcctttcccccctcctcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755799 lncRNA downstream 6733 27830973 ~ 27833037 (-) True G1533783
TU1755738 lncRNA downstream 126778 27712586 ~ 27712992 (-) True G1533722
TU1755702 lncRNA downstream 180493 27658996 ~ 27659277 (-) True G1533686
TU1755701 lncRNA downstream 181028 27658542 ~ 27658742 (-) True G1533685
TU1755696 lncRNA downstream 184711 27654810 ~ 27655059 (-) True G1533680
TU1755869 lncRNA upstream 11686 27926292 ~ 27926680 (-) True G1533845
TU1755884 lncRNA upstream 31063 27945669 ~ 27945957 (-) True G1533860
TU1755848 lncRNA upstream 127327 28041933 ~ 28043487 (-) True LOC110495955
TU1755992 lncRNA upstream 210006 28124612 ~ 28125902 (-) True LOC110495961
TU1756049 lncRNA upstream 304568 28219174 ~ 28226302 (-) True G1534021
XM_021571501.2 mRNA downstream 19949 27808174 ~ 27819821 (-) True cpb2
XM_021571493.2 mRNA downstream 40792 27754358 ~ 27798978 (-) False LOC110495948
XM_021571495.2 mRNA downstream 40794 27754358 ~ 27798976 (-) False LOC110495948
XM_036952454.1 mRNA downstream 232336 27574154 ~ 27607434 (-) True LOC110495945
XM_036952455.1 mRNA downstream 232355 27573531 ~ 27607415 (-) False LOC110495945
XM_036952469.1 mRNA upstream 34172 27948778 ~ 27973854 (-) False LOC110495957
XM_021571507.2 mRNA upstream 34172 27948778 ~ 27974405 (-) True LOC110495957
XR_005037422.1 mRNA upstream 60202 27974808 ~ 27982693 (-) False prkag3a
XM_021571512.2 mRNA upstream 60202 27974808 ~ 27982705 (-) False prkag3a
XR_005037420.1 mRNA upstream 60202 27974808 ~ 27982705 (-) False prkag3a
TU1755743 other downstream 41157 27754174 ~ 27798613 (-) True LOC110495948
TU1755360 other downstream 650221 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 651540 27187622 ~ 27188230 (-) False G1533378
TU1753025 other downstream 2130896 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 2266099 25573438 ~ 25573671 (-) True LOC110495915
TU1755852 other upstream 120358 28034964 ~ 28036616 (-) False LOC110495955
TU1756202 other upstream 436772 28351378 ~ 28352618 (-) True LOC110495963
TU1758870 other upstream 2369766 30284372 ~ 30284762 (-) True G1536703
TU1759222 other upstream 2605286 30519892 ~ 30525373 (-) True G1537022
TU1759310 other upstream 2688110 30602716 ~ 30603392 (-) True G1537091

Expression Profile