RNA id: XR_005037420.1


Basic Information

Item Value
RNA id XR_005037420.1
length 1460
RNA type mRNA
GC content 0.48
exon number 13
gene id prkag3a
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27974808 ~ 27982705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACCACTTGAGACTCCTGCTCCTAATATAGACCCAACTGGTTTGTGGGACAGGCAGGGGGAGAGGAGCCTGCATGTAGCAGGATCTAGCGTTTATTGTTGGGTGAGTTGTGCCCAAGTCTTTCATGGAGAAAATACTTATCAGGCAGATCATGTTTCAAGAGATGCGTGAAGAATTGAAGAATTCAGAGGCTGATGCTGAGATGTACATGAAGTTCATGAAAAGTCATTGCTGCTATGAGGCCATTCCAACCAGCTGTAAACTGGTCATATTTGACACAACACTACAAGTGAAGAAAGCCTTTTTCGCTCTTGTAGCAAACGGCTTGAGAGCTGCACCTCTCTGGGATAGCAAGACACAGAGGTTTGTGGGTATGCTGACTATAACAGATTTCATCAACATTCTCCATCGTTACTACAGGTCCCCATTGGTTCAAATGAAAGAGCTGGAGAGGCATCAAATTGGAACATGGCGAGatgtGTACCTGCAATACTCCAACCACTGTCTTCACAGTATCGCTCCAGACGCCAGcCTCTTCGACGCCATCTATTCCCTACTGAGGTATAAGATCCACAGATTGCCGGTTATCGATCCCGTGTCCGGAAATGTCTTACACATTCTCACGCACAAGCGAATCCTCAAGTTTCTCCATATATTTtaCTCTACACAGAAAGAGACAGTCCCAAAACCCTGCTTCATGCAGAAGACGATCCAGGACGTTGGGATCGGGACATTCCGGAACATTGCCACGGTCCAGCAGACGGCCTCAGTCTACGATGCCCTGTCTGTGTTTGTAGAGAGGAGGGTCTCCGCACTGCCCGTAGTAAACGAGCAAGGCAAGGTGGTGGCTCTCTACTCCAGATTTGATGTGATTAATCTGGCTGCCCAGAAGACATACAACAACCTGAACATGTCCATGCAGGAGGCCATCCGACGGCGCTGCTGTTTCATTGAGGGCGTCATCAAGTGCCTCCCCGACGAGACCCTGGAGACCGTCATTGATCGCATAATTAAGGCTGAGGTCCATCGGCTGGTCCTGGTGGACAAAGAGGACGTGTGCAGGgggatcatctctctctctgacctgctCCAGGCCATGGTGTTAAGCCCGGCAGGTATTGACGCCCTTTTAGCCTCTTAGCACCTGTGGGAGTCAGGCCTCCTTGCCCTACCTCCATCTTCCACCGCCTCTAGCCCCACCTTCCTGGCCCAGagATTTCAAGCAAATCAAACTGAGATCACTAGAGGACAATGTGAAGTCCATGGTGGATGAAAAGGGAGACCGTTTTCAAAATGTCAACATACTGTTGTAGAGAAAAACAATCTGCAACAATCAGCTGTATCAGTTGAGTTCAATAAATCACAATAGTCATTAGTTACCTTTGATCAAATGGACGATATAAGTTTGAGTTACTTTGTGTTGCGCTGAATTTGTGCTGTATTAAACATGTTCAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755884 lncRNA downstream 28851 27945669 ~ 27945957 (-) True G1533860
TU1755869 lncRNA downstream 48128 27926292 ~ 27926680 (-) True G1533845
TU1755799 lncRNA downstream 141771 27830973 ~ 27833037 (-) True G1533783
TU1755738 lncRNA downstream 261816 27712586 ~ 27712992 (-) True G1533722
TU1755702 lncRNA downstream 315531 27658996 ~ 27659277 (-) True G1533686
TU1755848 lncRNA upstream 59228 28041933 ~ 28043487 (-) True LOC110495955
TU1755992 lncRNA upstream 141907 28124612 ~ 28125902 (-) True LOC110495961
TU1756049 lncRNA upstream 236469 28219174 ~ 28226302 (-) True G1534021
TU1756072 lncRNA upstream 257798 28240503 ~ 28240728 (-) True G1534036
TU1756192 lncRNA upstream 362331 28345036 ~ 28345319 (-) True G1534150
XM_021571507.2 mRNA downstream 403 27948778 ~ 27974405 (-) True LOC110495957
XM_036952469.1 mRNA downstream 954 27948778 ~ 27973854 (-) False LOC110495957
XM_036952459.1 mRNA downstream 60201 27839770 ~ 27914607 (-) False LOC110496785
XM_036952458.1 mRNA downstream 60202 27839770 ~ 27914606 (-) False LOC110496785
XM_021571510.2 mRNA upstream 2761 27985466 ~ 27995296 (-) True LOC110495959
XM_036952468.1 mRNA upstream 12676 27995381 ~ 28036069 (-) False LOC110495955
XM_021571504.2 mRNA upstream 12676 27995381 ~ 28043537 (-) False LOC110495955
XM_036952466.1 mRNA upstream 12676 27995381 ~ 28043538 (-) False LOC110495955
XM_036952465.1 mRNA upstream 12676 27995381 ~ 28083203 (-) False LOC110495955
TU1755806 other downstream 60288 27861046 ~ 27914520 (-) True LOC110496785
TU1755743 other downstream 176195 27754174 ~ 27798613 (-) True LOC110495948
TU1755360 other downstream 785259 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 786578 27187622 ~ 27188230 (-) False G1533378
TU1753025 other downstream 2265934 25696539 ~ 25708874 (-) True G1531236
TU1755852 other upstream 52259 28034964 ~ 28036616 (-) False LOC110495955
TU1756202 other upstream 368673 28351378 ~ 28352618 (-) True LOC110495963
TU1758870 other upstream 2301667 30284372 ~ 30284762 (-) True G1536703
TU1759222 other upstream 2537187 30519892 ~ 30525373 (-) True G1537022
TU1759310 other upstream 2620011 30602716 ~ 30603392 (-) True G1537091

Expression Profile