RNA id: XM_021571504.2


Basic Information

Item Value
RNA id XM_021571504.2
length 4804
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110495955
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 27995381 ~ 28092196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCGGTTCAGGCAGTGTTTTGTAGGAAAGTGTCGATTGTCGAGTGATGGAATACTTTGCTCCTGTATGCCGCGAGAAGAATAAGGACAATTTACAAGTGGATACAACAAAATgaccattattgttattttttacttttaatatCTCTTCGCGTAAAACGGGTTATTTGTTTGGAGCTTCAATTCACTAAATCGCTTTCCAGCACCAGCTTGTCTTGAGAAGCTCCCAGCCACCATGGTGGTAGTGCAAAGCTACTGTGAGGCCAGCGCTTCCATCTCCAAAGCCTGGCTGGAGGGCGGCATCTCGCCCTGCTTCTACTTCACCCTGGTGCCCACCGTCCTGCTtaccctctcctccttcttcgGCGCCTTCCACTGCGTCTGCTACCGCCGCTACGGCACCGAGATGGAGCCCAAGTTCGTGCCGCGCTCGCGCCTCTATGGCCTCCAACTGTCagtcaccctgctcctcctgtTGCAGTTCCTAGGGGGGCTGGTGTGGAGGGCAGCCGGAGGAGGGGAGCTCCCCGGCTATGTGGTGCTGTACGGCTGCCTGTCCATGCTGGGCTGGGTCTGGGCAGTGGCCCTGCtaaggctggagaggaggagggtgctGGTGAGGGACCGGACGCGGGGCCACAGCACGGTGCTGCTGCTCTTCTGGGCTGTGGCATTTTCAGCGGAGAACCTGGCCTTCGTCTCCTGGGCCAGCCCCTACTGGTGGTGGGGCCTGGAGAACACACAGAAGCagGTGGAGTTTTCTCTATGGTTGATGCGCTACCTCGGCACAGGAACACTCTTCTTCCTGGGCCTGAAGGCTCCGGGGTTGCCACGGAGACCATATATGCTCCTGATCAACGAGGACGAACGTGACGTGGAGGGCGGCACTGGCCAGCCCCTGTTGAGTGGGGCGGAGGAGTCCCAGTCTACCTGGCAGGACTTTGGGCAGAAGGTACGTCTGCTGGTGCCCTACATGTGGCCCCGGGGCAATATTCTACTACAGGGCCTGGTGCTGCTCTGCCTGTGCCTGCTTGGTTTGGAGAGGGTTATCAATGTCTTTGTCCCCATCTACTACAAGAACATCGTGAACGAGCTGACTGATGGGAGCAGCTGGAAGACCTTGGTcaccactgtgtgtgtctatgtcctgCTCAAGATCCTGCAAGGTGGAGGGGCAGGTGCATCTGGCTTCATCAGTAACCTGCGCTCCTTCCTGTGGATCCGCGTGCAGCAGTACACCAACCGGGTGGTGCAGGTGCGTCTGTTCGGCCACTTACACTCACTGTCACTGCGCTGGCACCTGGGCCGACGCACCGGGGACGTCCTGCGCAGCATCGACCGCGGCACCTCCTCCATCAACACGCTGCTCAGcTACATTGTATTCAGCATCTTCCCCACCATCGCAGATATCGTCATCTCCATCATCTACTTCATCACCTACTTCAACGCCTGGTTCGGACTCATCATATTCGTCTGTATGTTCCTCTACCTCACCCTTACCATCATCATCACGGAATGGAGGACCAAGTACAGGCGAGACATGAACACCCAGGACAACAACGCCAAGTCCAAGGCAGTGGACTCCCTGCTCAACTTTGAGACGGTGAAGTACTACAACGCAGAAAATTATGAAGTGAACCGTTTTGAGGACGCCATCCTGAAGTATCAGATTTCAGAATGGAAGACCCAAGCCTCTCTGGCCTTCctgaaccagacccagaacctgATTGTTGGCTCAGGCCTACTGTCAGGCTCACTGCTCTGTGCCTACTTTTTCCAGGAGGGCAAGTTTAAGCTTGGAGACTTTATCCTCTTTGGCACCTACATCATCCAGctctacacccctctcaactGGTTTGGAACCTACTACAGAATCATCCAGAAGTCCTTCATCGACATGGAGAGCATGTTTAAGCTCTTCACCGAAGAAGAGGAGGTGAAGGACGTGGTGAATGCAGGGAATCTTCTCTATAAACTGGGAAAAGTGGAGTTTGAGAATGTGTACTTTAGCTACACTGACGGGAAGGAGATTCTTAAGGACGTATCATTCACTGTGCAGCCAGGCCATACTGTTGCATTGGTTGGCCAGTCAGGGTGCGGTAAGAGCACCCTCCTTCGCCTGCTGTTCCGTTTCTATGACGTCCAGGGGGGATGCATCCGCATCGATGGCCAGGACATCTCTAAGGTGAAGCAGGTGTCTCTGCGTGCCCACATCGGCGTGGTGCCCCAGGACACAGTTCTCTTCAACGACAACATCCGCGACAACATCCGCTACGGACGCATCTCTGCCAGCGACCACGAAGTGGAGGCGGCGGCCATCGCCGCAGACATCCACAAGAAGATCCAGACGTTCCCAGAAGGATATGACACCCAGGTGGGTGAGAGGGGTCTGAAGCTGAGCGGGGGGGAGAAGCAGAGGGTGGCTATCGCCCGGACCATCCTCAAGGCCCCTCAGATCATCCTGCTGGATGAGGCCACATCTGCTCTCGACACACAGACGGAGCGCAACATTCAGGCGTCGCTCATCAAAGTGTGCTCCAATCGGACCACCATCGTCGTGGCTCACAGgttgtcgaCCATCATCGGTGCCGACCAGATTCTTGTTCTAAGTGACGGTCAGATAGCAGAGCGAGGACGGCATGATGAGCTGCTGGCTAAGGGAGGGTTGTACTGTGACATGTGGATGAAGCAGCAACATGCCCAGGACTCAGACTCAGCCTCTGACACAGAAGCCAAAGACAGGAAGTCTGAGAAACTACAGCCCCCATCAGTCACTGCAGGCCACAGGAGCCACTGAGGATAGAGTGAGAGGTTCAAGGATATGTAGACATTGTGAGGAGACGGACGAGGGACGCAGGGAGAGGATTAGATACCTCAAAAGGCTGTTTTGTCTGtacttttttaaggtatctgtccATTGAGGTTCATTCGGTTATGAGTGAAGTTaagccccaccccaaccctctCTGTATGTTACGGGCAAGTCTAGGGGCCAAATGTCCCTTCCCCTTCCAAAATGTGAAAGATGCAAACACCTGCAAAATCATGATTTCTCTAAATGATCAGTGGCAAAAATCTGTGCACCTCGCTGTTGTCAcatcccacagtctgttgacatACACTACGATACCAGTTCTGTTACATgcgtctgtccacgagagattagtGCCTAATAAACACGACCAGGACTCCGCATAATCCGTCCTCTTGAAGTGACAGCAAGTCCAAAGTAGACTAATACCTACCCTTAAGCGCAGGTATAGGCAGTTTGGCACAGTGTCTCACAAAACTTTGAATTGTTGACTAATGTTTAGGGGTAGAGaaaagtatttgttttatttacagCATCTACAGGTTCAttgtaaattatatatatattttttactacaCCCACTTTTTAGCTCATGAGACGGATCATTTTTGTTAGCTACTATACAAGCAATAGACTTACATTATACTTAATAGACAAATGAAGCGATTCAGACCGATGTGAATGGTTAACAAAAAAATCTGTTTCACTCTAATTGTTTTTTGTCTTAGTACAAAGGTATGCGTACAAGAACTTCAAAATCTAATTTTGGTTATTAGTAAAACAGATATTTAGTCTGTATTTGGTTCATTTAGCATCGAAACTGCATCAGTTTTACTCCAATTAGACTTGGGCATTatcatgtactgtacagtctagGTGTTGGCTGATACATGCAAAATTAACTGGCTGTAACTTTTATTTGTCACCAATGGTGATCAATAAGAACTACTGGCAGTATATTAAAGAGAACAGAGTCGATGGAAAAGGAAACCTTTATCTATGAATGAACTCAGAATGCTCAAACCTTTCTATGCTGCTACCTGTTTTGCGTAAAGAACTACTGTTAGTGTATCTTTATTTTAAAGGAAGAAATTAGTCTGTATATTTGAATTTGTAAATATCTATGCCTTGCATTCCCAAGGCAGTGTGGAGTTTGTCAATATCTGTTGATAATAATCACACTCCATTTACAGTACATATTGTCAaattattgtttatttttttaaagggcCATAAGGGAAGATCTATCCATTTAACTGAACTTGAGTTATTTGAGAGAGAATGTGGACTTTATATCTACGTGAAGTCCCTAGAGTTACGAGTTTGGGGTTGAATTGGAAACTGTCTGCATTAATCAAGGGAACGTGAAAATGGACATACTTGCCATCCATATATTGCACAGCAGACTACATCATGAAAAGTTATTTCAGACTGAAATAAATAGATGAATCCCAAATGCATTTGTGACTACAGAAGTAATACCAAAGAGCTAGCTAGAGTGGTTTTGCTAGCAAATCATTGCTCTACCACTACAGCAGTCAATCATTTGTAGGTGTACAATGTGTGCAAACTGGTGCAGTCAAATAATTTACACTAATGCCCATGAGTTTAAATGTTCTGTGTCAATGAGTGACAttgacaccacaggaggttggtggcaccttaattggggataACGGGCTTatgataatggctggagtggaatagtatcaaatacatcaaactattggttttcatgtgtttgatgccattccatttgtgcCATTCCAGAAATGCAACATTTTTGTTCTGATAATAACTGCTTTGACACAATGTCAAACTCTTTTGTATGTGATTTGGGGGCATAGTTTGTTTTGTAGTGTGGTCTTTGCCTTTGTCACACTTCCAATGTGTGTGGCATCAGGCTATGCTTGGATGTCaaatacataaatggtttgttttTTCTTTGTGTATATGTTAATAAATGGTATAATTAAAGATATATTATGACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1755884 lncRNA downstream 49424 27945669 ~ 27945957 (-) True G1533860
TU1755869 lncRNA downstream 68701 27926292 ~ 27926680 (-) True G1533845
TU1755799 lncRNA downstream 162344 27830973 ~ 27833037 (-) True G1533783
TU1755738 lncRNA downstream 282389 27712586 ~ 27712992 (-) True G1533722
TU1755702 lncRNA downstream 336104 27658996 ~ 27659277 (-) True G1533686
TU1755992 lncRNA upstream 81075 28124612 ~ 28125902 (-) True LOC110495961
TU1756049 lncRNA upstream 175637 28219174 ~ 28226302 (-) True G1534021
TU1756072 lncRNA upstream 196966 28240503 ~ 28240728 (-) True G1534036
TU1756192 lncRNA upstream 301499 28345036 ~ 28345319 (-) True G1534150
TU1756217 lncRNA upstream 326558 28370095 ~ 28370391 (-) True G1534174
XM_021571510.2 mRNA downstream 85 27985466 ~ 27995296 (-) True LOC110495959
XR_005037421.1 mRNA downstream 12676 27974808 ~ 27982705 (-) False prkag3a
XM_036952463.1 mRNA upstream 11599 28055136 ~ 28083200 (-) False LOC110495955
XM_036952464.1 mRNA upstream 11599 28055136 ~ 28092196 (-) False LOC110495955
XM_036952470.1 mRNA upstream 81062 28124599 ~ 28199758 (-) False LOC110495961
XM_036952471.1 mRNA upstream 84154 28127691 ~ 28199758 (-) False LOC110495961
LOC110495963 mRNA upstream 197957 28241494 ~ 28368147 (-) False LOC110495963
TU1755806 other downstream 80861 27861046 ~ 27914520 (-) True LOC110496785
TU1755743 other downstream 196768 27754174 ~ 27798613 (-) True LOC110495948
TU1755360 other downstream 805832 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 807151 27187622 ~ 27188230 (-) False G1533378
TU1753025 other downstream 2286507 25696539 ~ 25708874 (-) True G1531236
TU1756202 other upstream 307841 28351378 ~ 28352618 (-) True LOC110495963
TU1758870 other upstream 2240835 30284372 ~ 30284762 (-) True G1536703
TU1759222 other upstream 2476355 30519892 ~ 30525373 (-) True G1537022
TU1759310 other upstream 2559179 30602716 ~ 30603392 (-) True G1537091
TU1759986 other upstream 2868290 30911827 ~ 30914295 (-) False LOC110495992

Expression Profile