RNA id: LOC110495963


Basic Information

Item Value
RNA id LOC110495963
length 5877
RNA type mRNA
GC content 0.57
exon number 14
gene id LOC110495963
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28241494 ~ 28368147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGCAGAACTCTTAATGGCTGAGATGGAGGAATCGAGGGGCGATGCACAATAACAATGGAGACATGGTAACATGTGGCCCATTGTGGATAACAGCTTAGCGGGCCTAATAATTGGGCCACTATTTGTCAATCTGTGCACGGATcattgtgtgttgtggtggtgttgagatgtgtgtttagGAGAGGAGAAGCAGGGGTTGGACCAAGGGTCCTGGCTGGCCAAGGGCGTAGGGATCGGGGAGGGGTAAGTGGGAGGCCCCCCTGTATGTGTCATTACGAGGGGGTTGAGACAATGGAGGAGGTTGGTGACACAATGAAAGTGACTAGGCAGAAGGTCgtcatttttttcccccattttaTTTTTCTCGTCCGTCAACTCTCTGATTCCgccgtttttatttattttataaatttTTTCCTCTTTCCTTTACATTTCACTCCGGAGCTGCTCTTGTGGTGCTAGCATGCATGACTTAAAATGAGCCTCTCTCTCCTGAGCGATATGGAAGGAGAGCAAAACAAAGAAGAACAGATCGAGTtgacggaggagagagggacactCACGGATGAGgaTGACAGCCATCCACTGACCCACAGAGGAGAACCCGAAGACCGACTGAGGCTTGACATCCCCACCACAGCCAAGATGAGCCGGGTCACACTCAgCCCCCTGACCGAGATAGTGGGGAGCTCTCTGGAGAACAGGGACCGCTGGGGATCCATGTCGTCCCCTACTGCTCATTGCTGAGTGGACAGTGAggaacgcacacacactcactttcacTCGCTCACTGTAACTCACTCACTTTCACGCACTCTCTTACACATTCTCTACCCATGCATTGaaggctgtttgtgtgtgtgtgtgtgttcagactgtGTTTATCATCCGTTCTCAGGACCCTGGGCCTGCACATTAAAAGTATCGAGGCGAACAGTCGCTCCATGAGAGAGGGCCTTTTCCGGGAGGATGAGTGCATCGTTCAGATTAGCGGCACCGAGCTAATGGACAAGACATTTGCCCAGTCCCAGGAAGTGTTCCGTCAGGCCATGTGTTCCCCTCTGGTGCGCCTGGAGATCCTGCCGCTGGCTAACAAGCAGCGATACGAGAAACGCCTCATCGGGCAGCTCTTCACCGACAGTCACGACTCCGTCTCCAAAGCCATGAGCCCCCTCGTGATCCACCAAAAAATGGACGCTAAACCAGAAGTGAAACCAGAAACCGTGAAACCAGAGCAGATCAGTCCCAAACTGGAGCCGAGACGTCCAGAGCTCTGTGTCCTCCGCTCCAAGACCCCCGATCTGCCAGCCTCTCTCACCCTGCTATGGGAGCACCAGACTGGGCACGTCCCAGAGGAGATGCCCCTCAGTGTGTCCCCAGCCCCGGTGGTCAGATATCGGGATGGGGCCTCCCCCACGGCGGTGGGGGTCAGTGAGAGCCCCCTGTCCCGGGGAAAGAGTCCCACTGGGCTCCCTAACCTGGCcaacctgaccaaccagaaggGAGGCCGGAAGCTGAAGATTGACCTGAGGAAAGGTACCGAGGGGCTGGGTTTCACCGTGGGGACTCGACAGTCCATGGCCCGGGGCCCATCCTGATCAAGAGCATCCTTGCCCGTGGCGCCGCCATCTAAGATGGCCGCCTGCAGCCTGGCGACCGCATCCTGGAGGTGAACGGTGTAGACCTGATGGATCGAACTCAGGAGGAGCTGGTGGCCATGCTGCGCAGCACCAAGCAGGGGGAGTGTGTCTCTGTGGTTGTGGCCAGACAAGAGGAGATCTTCCTACCCAGAGAGCTAaAACGGGAGGAGGCTAGCCCCatggtgctggaggatgggcGGGAGCAGCTGATGTTCGAGGTGCTCTTGAACGACACTGGCTCGGCCGGCCTGGGCATCAGCCTCAAGGGCAACAAGTCCCGGGAGAAGGACGAGGACCTGGGCATCTTCATCAAGTCCATCATTCGCGGAGGGGCCGCCTTCAAGCTGATTGCAGTGAACGGCGAGGAGCTGTTGGACCTCTCCAACCACGTCGCCATGGAGACCCTACGCCACTCCATGTCCTGGGAGGGCAATGCCCGTGGCACCATCCAATTGGTGCTCCTCCGCGCCGCCCCCTCATCTGGCTCCGCCCACAGCGCCAACGCACAGGAGAGCCAGGAGGCGGCTAGCCACCAGATCCCAGACGGCCCCTCCGGACCCCCGGCTCTAGCTGCAGCCCTGGAGTCCCACCACCACAGCAACGGTCCCAGCCCTCAGCCGTCCATGGTCTCAGCTTTGGAGCTCCTCCCACTAATGGTGGCTACGCCCATCACGAGGAAGAGGAGGCGATAGAGGAGGATTTCCCCTCACCACCTTCGCCTGGCTCCGTGGAGGAGACGAACGCTAAACTCCCATGCACAACACAACCTCACCGGAGTGAGCGGAACAAGACTCCCTATTCTCCTGAGGGTCCCCTtcacccagacacacagagagcacagCAACCCAGGCAGACGGACTACCCTCAGACAAGGAACTCTTAAGAGCACGGACCTGGTGGCTGATGAGAGCAACATGAGATCCCTGGCAGAGCAGAGACCAGGTGACCTGTCAGAGCAGAGCTCCGGCCGAGACACGCCCGTCAGTGGCTCATCCCGCCAGGACCAGATTGAATCAGGGgcagggaagaagaagaagaagaccaaagggaagaagaagaagaaagaagaaaagCAAAGAAAAAGTGAAGGAAAACTGCGAATTCTGAGGACCAGGAGAAGGCCAAGAAGAAAGGATTCGGCCTCTTAAGGAGAGTGGATCCGAATGACTACCCCACCCAGTCTAGGACAGCACCTGGTTACCCCGGCCGAGGCAACTACTACCCCCCTAAAGAGGCCCAGCCCCGCTCCTCCAGCCAGGTGGACCCCAGGTACTACCCATCCTCGCCCCACCGGGCTGACCAGCACCAGGATGTGCCCCCCTCACCAGGCACCCGTGCCCCCCACTACGAGACAGTGGGCAGGGACAGTTACCATGACGCCAGCCCTGAGCGCTACGGCGGCGGCTACAGGGACGGCAGGCAGCCAGACCCAGGCCAGAAGAACAGCATGATTGGAGCGGTGTAGGTGCCATAGCTAGATGGACTCAGACTGGGATTGCAGAATTCTGGTAACATTCCCCAGATTTTCCGGGAAAATCCCAGTTGGAAGATTCCCGAGTTTCTACCATATTTCTTCTTGATTCCTgaaatcttccaaccaggatttttgGAAAACCTTGGAATTTGGAAAGATTACTGATTACTCCAACCCTAAATCAGACCCACTCATTGCTTCTCTACAGCCCCCATGTCTGAAAACATCCTCGCCCCCCTACCTCATTTGGTGTCTGCAAATCTGAAGGAATCAGATTGGTGTAAATAATACGGCTCCAACTAGACGTCCAATGGGCGTGAGCCATACTGCTTACACCTATCCAGGTCTTTGAGATctacaaacatcaaagcagtagGGGaagggttgcgtcccaaatggcactttattccctttctagtgcacttcttttgaccaggtcaaaagtagtgcactatgtagggaataggctgccatttggaagGGGTGGTTTATGGACCAGGCCATCATCAGAACACTCCTCTCAGCTGCTGACATGTTTTAGAAGCAGTAAAGGTCTATATGTgtaatgtatgtacagtatgtatagagACATGTTTAGAAATGTGTGTTTCTTCATGCATGTGTGGGGATGTAAATTATGTATTTTTGATTCACAGGCGTCCAGAATGACTGGCGGTAGACATAATGTACAGATTGGAAAGAGACTTTTAATTGAATACCAGCCAAACTCTTGCAGGGTTAAAACCAGGCCCCTCCCTTTCTGGAACAACAGTGAGAGGCCAGGGATGGTGAAGTTAGGGTTTCGactcaaaaggcaccctattcccgagaTAACGGAAGACAACGGGACAAGAAGTTGACACTGGACAGGAAGTTGATCCTAAGAAACAAGGTCAGAGGAACAGGAAGTAGGGAACAGGAAATGAAGTCCACATCAAAGCATTTTTGCCCGCCTGCCGTGTCCCTTCCATCCGCCTTTTTAGATGTGGACTTTCTGCTGCCCATAATGTTGCTTTTTTAAGTAAAgtataatgtgtgttgtgtttatgATTTAAACGGCTGTGTCAAATTTAAGTTATGTTATCATAAAGACACTGTTGAACAAATTAAAATGTATGCTCTGTGTTGACTAACTATATTTATTCATCACATGGGTtgtgtcccgaatggcaccctattccctatataccgcACTTTTGAGCAGGACCCTAATGGGCTGTGTCCATAGCCTTATGaaccctggtcagaagtagtgcaccacatagggaacacggtgccatttggggcacagcCACAGTCTCCCAGTGATGAAGGCCTAAGAGAGACACTTAAACATGTTACTCATATGCACCGGGATTATTATCCTTTCTCGCCATTGATCTCATTTCaaggcggttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagtaaaataaaggtaaaataaattaaagAAATGTTCTCTTGTGTGATGGTAAAAAATCACAACGCTGACCATATCATGTCATATTGTACGTTGATGACGATACATTTTAACCTTTGTTTGTAAATGCATGTTTTTATATTATGCCGTGCATGAAATAGACATTGTAAATGATCATATACAATGTGCCAAGATGAATTAATTTATTGTTCACCAATTTAGCTGTCTCATTTTACAGGATGATGAAATTGCAAAGTTATGCAAATTGTCCTGATTATGAGTCACCAACATGATGACTCATCTCGCCCAAATGATTCATTAAGATTTTCAACCCAGTTTAGCTTTCCCATTTGAGATAAATTAGCCCTCTACGATAACAGAGAGGCCcaggctgcttcccaaatggcaccctattccctacattgtgccataattttgaccagggcccattggaccagctcatagggctctagtcaaagtattgcactatttagggaatagggtgcaatttgggacgtagACCCAGTCTTACTGCTGATAAAGACTGAATCACCCTCAACAATTAAGACTGAGGAGATCTCTGTGCTGAAGTGATTACCTCCCAATTTGCTCCCACGGAAAAGGAAGATCTGGCTGATTGGTGGAATTAGAGGTTGAAATTAGGATAATTAGAATCTGTTGAGAGCTCATTTTATCAGTTAGTGTTTAATTACCGCCGAGGCCAGTCAGTGTGTTTCAgatttcatcccaaatggcaccctattttctacatggtgcattgcttttgaccagggccagtaGGGCATATTGGGGCCGATTCTAACCCGAGTTTAAGCGTGCGTAAATGGAACGTAATTCCCTTTAATGCACTTCTCTATGCgcattctgaccttgaacttaagcatgagaatagcatgctgTTCACACGCTATTCATTTTGGGTGGAGATCTAAGAAATAAAGGTGTGTTTGAGGTGCGTCTACAGATGTATTCTGCCTTGACGCACGAGGAGAACATGAATAACATATGTATTGTGGCCCATTTTCCTCAGTGAAGTAGGCTATAAATAGCTATGCAGTTATTCAAAAATTGTATTGTGTGCCCTCATAATGCACAGTATGCAATTTGGATTACCAAACTATAGGTTTATGTAGGGCTGAATCTGCCGAGTTGATGTATGCgctttaaaatgttttaattatataatatatataattatataatgttaaatattaaccactatcaggAGCCACCGTCAGTAATACCCACAGACATTtatacactgaataaaaatataaacgcaacatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1756072 lncRNA downstream 766 28240503 ~ 28240728 (-) True G1534036
TU1756049 lncRNA downstream 15192 28219174 ~ 28226302 (-) True G1534021
TU1755992 lncRNA downstream 115592 28124612 ~ 28125902 (-) True LOC110495961
TU1755848 lncRNA downstream 198007 28041933 ~ 28043487 (-) True LOC110495955
TU1755884 lncRNA downstream 295537 27945669 ~ 27945957 (-) True G1533860
TU1756217 lncRNA upstream 1948 28370095 ~ 28370391 (-) True G1534174
TU1756227 lncRNA upstream 9520 28377667 ~ 28378167 (-) True G1534184
TU1756236 lncRNA upstream 16967 28385114 ~ 28385394 (-) True G1534193
TU1756241 lncRNA upstream 19244 28387391 ~ 28387887 (-) True G1534198
TU1756248 lncRNA upstream 26582 28394729 ~ 28395000 (-) True G1534205
XM_036952470.1 mRNA downstream 41736 28124599 ~ 28199758 (-) False LOC110495961
XM_036952471.1 mRNA downstream 41736 28127691 ~ 28199758 (-) False LOC110495961
XM_036952464.1 mRNA downstream 149298 28055136 ~ 28092196 (-) False LOC110495955
XM_036952465.1 mRNA downstream 158291 27995381 ~ 28083203 (-) False LOC110495955
XM_036952463.1 mRNA downstream 158294 28055136 ~ 28083200 (-) False LOC110495955
XM_021571539.2 mRNA upstream 304682 28672829 ~ 28675992 (-) True LOC110495969
XM_036952473.1 mRNA upstream 320975 28689122 ~ 28731312 (-) False LOC110495970
XM_036952474.1 mRNA upstream 320975 28689122 ~ 28731312 (-) False LOC110495970
XM_036952475.1 mRNA upstream 320975 28689122 ~ 28731312 (-) False LOC110495970
XM_036952476.1 mRNA upstream 320975 28689122 ~ 28731312 (-) False LOC110495970
TU1755852 other downstream 204878 28034964 ~ 28036616 (-) False LOC110495955
TU1755806 other downstream 326974 27861046 ~ 27914520 (-) True LOC110496785
TU1755743 other downstream 442881 27754174 ~ 27798613 (-) True LOC110495948
TU1755360 other downstream 1051945 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 1053264 27187622 ~ 27188230 (-) False G1533378
TU1758870 other upstream 1916225 30284372 ~ 30284762 (-) True G1536703
TU1759222 other upstream 2151745 30519892 ~ 30525373 (-) True G1537022
TU1759310 other upstream 2234569 30602716 ~ 30603392 (-) True G1537091
TU1759986 other upstream 2543680 30911827 ~ 30914295 (-) False LOC110495992
TU1759987 other upstream 2546222 30914369 ~ 30953308 (-) True LOC110495992

Expression Profile