RNA id: TU1756202



Basic Information


Item Value
RNA id TU1756202
length 354
RNA type TUCP
GC content 0.57
exon number 2
gene id LOC110495963
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28241494 ~ 28368147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCTTTTCCGGGAGGATGAGTGCATCGTTCAGATTAGCGGCACCGAGCTAATGGACAAGACATTTGCCCAGTCCCAGGAAGTGTTCCGTCAGGCCATGTGTTCCCCTCTGGTGCGCCTGGAGATCCTGCCGCTGGCTAACAAGCAGCGATACGAGAAACGCCTCATCGGGCAGCTCTTCACCGACAGTCACGACTCCGTCTCCAAAGCCATGAGCCCCCTCGTGATCCACCAAAAAATGGACGCTAAACCAGAAGTGAAACCAGAAACCGTGAAACCAGAGCAGATCAGTCCCAAACTGGAGCCGAGACGTCCAGAGCTCTGTGTCCTCCGCTCCAAGACCCCCGATCTGCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1756192 lncRNA downstream 6059 28345036 ~ 28345319 (-) True G1534150
TU1756072 lncRNA downstream 110650 28240503 ~ 28240728 (-) True G1534036
TU1756049 lncRNA downstream 125076 28219174 ~ 28226302 (-) True G1534021
TU1755992 lncRNA downstream 225476 28124612 ~ 28125902 (-) True LOC110495961
TU1755848 lncRNA downstream 307891 28041933 ~ 28043487 (-) True LOC110495955
TU1756217 lncRNA upstream 17477 28370095 ~ 28370391 (-) True G1534174
TU1756227 lncRNA upstream 25049 28377667 ~ 28378167 (-) True G1534184
TU1756236 lncRNA upstream 32496 28385114 ~ 28385394 (-) True G1534193
TU1756241 lncRNA upstream 34773 28387391 ~ 28387887 (-) True G1534198
TU1756248 lncRNA upstream 42111 28394729 ~ 28395000 (-) True G1534205
XM_036952470.1 mRNA downstream 151620 28124599 ~ 28199758 (-) False LOC110495961
XM_036952471.1 mRNA downstream 151620 28127691 ~ 28199758 (-) False LOC110495961
XM_036952464.1 mRNA downstream 259182 28055136 ~ 28092196 (-) False LOC110495955
XM_036952465.1 mRNA downstream 268175 27995381 ~ 28083203 (-) False LOC110495955
XM_036952463.1 mRNA downstream 268178 28055136 ~ 28083200 (-) False LOC110495955
XM_021571539.2 mRNA upstream 320211 28672829 ~ 28675992 (-) True LOC110495969
XM_036952473.1 mRNA upstream 336504 28689122 ~ 28731312 (-) False LOC110495970
XM_036952474.1 mRNA upstream 336504 28689122 ~ 28731312 (-) False LOC110495970
XM_036952475.1 mRNA upstream 336504 28689122 ~ 28731312 (-) False LOC110495970
XM_036952476.1 mRNA upstream 336504 28689122 ~ 28731312 (-) False LOC110495970
TU1755852 other downstream 314762 28034964 ~ 28036616 (-) False LOC110495955
TU1755806 other downstream 436858 27861046 ~ 27914520 (-) True LOC110496785
TU1755743 other downstream 552765 27754174 ~ 27798613 (-) True LOC110495948
TU1755360 other downstream 1161829 27187622 ~ 27189549 (-) True G1533378
TU1755359 other downstream 1163148 27187622 ~ 27188230 (-) False G1533378
TU1758870 other upstream 1931754 30284372 ~ 30284762 (-) True G1536703
TU1759222 other upstream 2167274 30519892 ~ 30525373 (-) True G1537022
TU1759310 other upstream 2250098 30602716 ~ 30603392 (-) True G1537091
TU1759986 other upstream 2559209 30911827 ~ 30914295 (-) False LOC110495992
TU1759987 other upstream 2561751 30914369 ~ 30953308 (-) True LOC110495992

Expression Profile