RNA id: LOC110496786



Basic Information


Item Value
RNA id LOC110496786
length 885
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110496786
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28474349 ~ 28479668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGGTCAAGGCAGAGTGAAGTTTGAGCTGAAGAATCCAGTGTCTGTGACCAGTGTAGCGGTCCAGTACAGGCAGGACGTGGTTCGGGTGGAGGTCAAGCAGGATTTCCTAGGGAACGGTCAGTTGATCCAACCATCTGATCTGACCCTGGGAGGCTGTGCATCCagaATGACAGAGGATGTACTCATCTATATCTGTACCCTtatctacacaccatcaccagtTTAAGGCACTCCCATTGTAAGAACAAATTATGCTGAGGTTGGAGTTGAATGCCATTATCAAAGGAAGCACAATGTGATCAGTAATGCTCTGAAGCCTACCTGGGTTCCCTTTGCCTCCACCAAGGTTGCAGAGCAGCAGCTGGTCTTTTCTCTCAGGCTCATGACAGATGACTGGCAATTTGTGAGGCCCTCCAGTGTCTACTTTCTGGGGCATGTCATGAGCATTGAAGCCTCCATTATCCAAGCCCACCACACAACTCTCCATGTCTACGTGGACAGCTGTGTGGATACGCTGGCCCCTGAACCTAGATATTCCTTTATTGAGAACCATGGGTGTCTTACTGATGCTAGACATACAGGCTCCAAGTCCCACTTCCTGCAGCAAACCCAGGATGACAAACTCTAGTTTCAGCTTGAGGACTTCAGGTTCCACCAAGATGAGAGGAGCTCTATGTACATCACATGTCATCTGAGAagagAAATGTCGGCCTCTGCTTCCATTGACTCAGAACACATGGCTTGCTAGTTTACAACAGAGGCAAACCGGTGGGCTTCAGCAGGTGGGGATGACCTGGTGTGTGGCTGCTGTGACTCCACCTGTGGCCTGAGAAAGGGGAGGAGTCTGCTGACTGACATTGTATTCTACCAGAGTAATCTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1756237 lncRNA upstream 88055 28386030 ~ 28386294 (+) True G1534194
TU1756216 lncRNA upstream 103900 28369831 ~ 28370449 (+) True G1534173
TU1756082 lncRNA upstream 203830 28263711 ~ 28270519 (+) True G1534045
TU1755973 lncRNA upstream 329571 28143972 ~ 28144778 (+) False G1533948
TU1755974 lncRNA upstream 329726 28143972 ~ 28144623 (+) True G1533948
TU1756394 lncRNA downstream 32350 28512018 ~ 28515959 (+) True G1534339
TU1756383 lncRNA downstream 115978 28595646 ~ 28597306 (+) False G1534330
TU1756381 lncRNA downstream 116308 28595976 ~ 28597306 (+) False G1534330
TU1756384 lncRNA downstream 116308 28595976 ~ 28596536 (+) False G1534330
TU1756382 lncRNA downstream 116968 28596636 ~ 28597306 (+) True G1534330
XM_021571508.2 mRNA upstream 527172 27943373 ~ 27947177 (+) False LOC110495958
LOC118941047 mRNA upstream 533551 27938032 ~ 27940798 (+) True LOC118941047
XM_021571503.2 mRNA upstream 543011 27925782 ~ 27931338 (+) False si:dkey-1h24.6
XR_002469493.2 mRNA upstream 642444 27829955 ~ 27831905 (+) False LOC110495952
XM_021571497.2 mRNA upstream 645007 27820568 ~ 27829342 (+) True alg11
XM_021571522.2 mRNA downstream 41812 28521480 ~ 28595208 (+) False LOC110495966
XM_036952472.1 mRNA downstream 45442 28525110 ~ 28582719 (+) False LOC110495966
XM_021571527.2 mRNA downstream 45442 28525110 ~ 28592183 (+) False LOC110495966
XM_021571534.2 mRNA downstream 45442 28525110 ~ 28592183 (+) False LOC110495966
XM_021571524.2 mRNA downstream 45442 28525110 ~ 28592238 (+) False LOC110495966
TU1755074 other upstream 435873 27974813 ~ 28038476 (+) True G1533121
TU1755008 other upstream 524127 27947078 ~ 27950222 (+) True LOC110495958
TU1754835 other upstream 822524 27636540 ~ 27651825 (+) True LOC110495947
TU1754169 other upstream 1716672 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 2530671 25934180 ~ 25943678 (+) True LOC110496782
TU1756511 other downstream 253107 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other downstream 253107 28732775 ~ 28734991 (+) True LOC110495972
TU1756570 other downstream 324360 28804028 ~ 28804673 (+) True G1534488
TU1756577 other downstream 333161 28812829 ~ 28813103 (+) True G1534495
TU1758887 other downstream 1817463 30297131 ~ 30297346 (+) True G1536720

Expression Profile