RNA id: XM_021571522.2


Basic Information

Item Value
RNA id XM_021571522.2
length 5195
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110495966
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28521480 ~ 28595208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCTCTGTGACGTGTCTGGGTTACCCCTTCTGGCTGTGACTGAACTACAAAATAGCTTGTTGCTTGTGCAACACGATAGCCTTACTGTAAAGTAGTTAGTTGTGAAAAAAAGTCATTTCTGCCATACCGATCTTCTATTTTTATTTTCCGACCAGAATGTTTGCAACTCGATATTACCTTTCCTGATAGTAGTTCCGCGTGGGCCGTTGGAAGTCTCTTGCCTGCGCGCGGTGACAAGTACATCTGGATGCGACAGatcGTCGACAGAAAGTGCCTTGTCAGACATCCCTACTTGAGCTGCCTGCCTGCACGTCACCTCCACCAAGCATGCAACATTCCCTCCCTCGCTGTGACAGAAGATAGCTCAACCTCAGCCCCTGCCCTACCAACTCATCTTTATCTGGCTCCGTCGCTGCGCTGCCTCAGAAACCCAAGCAGAAATATTTAACTGCAGCGGTTGGGGGAACTGGCCGGACTCTCTGCCAAAAcagagtgctgactgactcattCGGAGAAGTTTAGTCAATACCCAACCCACCGTATGCACAAATTTATATTCTCGCCCAAGCAGTGCCATCACCCTCGAAATAGCACCAGTTTCAGTTATcttccccaccccctccccccttctTCACACTACCACCACATTCGGACGGTCCATCAGTCCACCCTGCCTCTGAGCATGCCCCCGTTGACCTGTCAGTGGCCTGCACCTGGGACTAACTGATTGACGAGCGACGTCTCTTGATTGACAGCTTCTCTGATAGCCGCCATCTCCCAAGCTGCGCCCACATCCAGGTTGCAAGTCCACCAACTCTGCTGCTCTGAAGTCCGCAAGGGCAAACGACTTTCACTGACCCACAATTTTTTTTGCTACACTTTTAGTTGTTTTTTTAGCACACTGAAGAGCCATTAGAGTATAGCCTCTCCTTAAACAAGTGGCTAGCTTTACCCCACCCCGGCATTGCTATGGCTTTAAATATTGCTTCGATGCGAGACACAAAATGGCTGACGCTGGAGGTGTGCCGACAGTTCCAGAGGGGGACATGTTCGCGGAGTGACGAGGAATGCAAATTTGCGCACCCGCCCAAAAGCTGCCAGGTGGAGAACGGAAGGGTGATTGCCTGCTTTGACTCGCTAAAGgGCCGATGTACGCGAGAGAACTGCAAGTACCTCCACCCCCCGGCCCACCTGAAGACCCAGCTGGAGATCAACGGCCGCAACAACCTCATTCAACAGAAGACTGCAGCAGCCATGTTGGCTCAACAGATGCCTTTCATGTTCCCTGGCACGACCATGCAGCCTACCATGCAGTCGTTTCCTATTAGCCAGGGGCTGGGCTCCAGCCCGGGGCTGAGCTACGCTCCCTACCTGACCCACATGACCCACAGCATGGGCATGATGCCCACCGAGATGCTCCAGCCCAGCACCCAGAGTATCATCGTCCCTGGAAGCCCTCCCTGCTCAATGCAGAGTTCCTCCTCCAACCAGAAGCTTCTACGCACGGACAAGCTGGAGGTGTGCCGGGAGTTCCAGCGGGGCAACTGCGCGCGTGGCGAGACGGACTGCCGCTTCGCTCACCCCAGCGACAGCCCTATGATTGACACTAGCGACAACACTGTGACCGTGTGCATGGACTACATCAAGTCACGCTGCTCCCGGGAGAAGTGCAAGTACTTCCACCCGCCGGCCCACCTGCAGGCCAAGATCAAGGCTGCGCAGCATCAGGCCAACCAGACGGCTGTGGCCGCGCAAGCTGCTGCCATGACTCAGTCGACTGCCAAAGCAATGAAGCGACCCCTCGAGGCAACTGTAGAACTGGCGTTCCCCCACGGCTGCCTGCAGCCCCTACCAAAGAGACAAGCACTTGAGAAGAGCAACGGGGCCAGCTCGCTCTTTCACCCCAGTATGTTGCACTACCAGCAGGCCTTGGCCAACGCACAGCTGCAGCAGCAGACGGCTTTCTGTGGCTTTCCCACAGGGTCAGTCTTGTGCATGACTCCAGCTAGCAGCCTTGATCATCCTGAAGTAACTGTCAGGAAGGAAATGCAGTGTCAAGAAGCTGCACTGCCAAGCCCAAAACAGCCCTTTTTCTGTACATACTACCTTCCCCTTCAACAACCTGCATGCTAAGAGTGTAATACTACCAATTAACCATAAGACTTGAGTGCTGGTGTAAGATGATACACACAACAAAAATATGTAAATGTATTGCTAGGAAACTATTGCCATGAAAATTATGACAAAAAAGAATATGTACTGAACTACATACACTTAGTGGAGAGTTGGTGATGAGTTCATTTTAACGATTGTTTTCTCTGTTAAAGTAATATGGGTccttttttatattttgttttcaaaaCAGAACCTCGATCTGCACAAATGTTCACCCTTTGAAAACACTCTTATTTGCACTATAAGAGAACTAGTGCTTATTGTCAAAAGTGCTTCATTGTTTTAAACAGGAGAGTCACAGAGAAGCCCCTGGTTGCAACTGGCGCTCCAGATCAAGCTAGAAGGGATTGTTTTACTTTTTGTTTGTTCTAATTATTTTAAAAAGACAAATGTTAGGAAAGAAGACATGCTTACTCAATGACTGTCCTCTTAATGATGGTTTGAACGTGTGCCCCcaccccatcaccaccaccccttTAAAATGGTGTGGTATGCACTCCATATGAACCATTTGCCAACATTTAATCTCTGGAAAACCAACGGCTTGCCAAACGAAAGTCATCGCGACTGACAGACTAACGGACAGAAGCGATTGGAGTCGATCTGCAAGGGAACAGACGTGGAACAGCTTCGTGGCCAAAACGTGCGGTCGGGCCTCGTTTTTGTGCACGTCTGGGGAAAAAAGAACCTAGAATATCGATTTCTTCTCCTTCGTTAAATTTCAGTTTTACTTTTGGATGGGTGCTGACatttgggttgtgtgtgtgtgtgtgtgtgtgtgagaggttgggTGGGAGACTCAGAGGGGTTGGTGTTGGGGAGAGTTATACCTGGCATCAGGGAGTGCTACTAGCCTATATTGCCCCGGTTTGTGTGCCACGGGCTTAACAAAAGCTTGCGGGTGGCCGAAAGCATACAGCGGGAGAGAGCCTCAGCCTGATGGGCCAAGCCATGGATTCTGCCAGCAGACTGGAACAGACCGACTCGACTGTAAGTCCACCAGAGGCCCCAAAGTCAAGACCACAGGGACGAGGCCTTTTGGGGAGTGGGGCTAGAAGGAGGGATAAGGGTGAGATCGGCGAGGGGTGAAACAAGTGCTACGACTCAAAAAGGTGCATTCAAAGATGCTAGTCATCGTCGTGTGATGACGTGAAGTCATTGACTGGAGGGCTATCTGTGACTGTCAGTCGTCACCCTGCTATCACCGAGAATCCTGTTTCTATTTGAGAAAAACTGTAGAAGTGCCTAAAAATCCTTTAACTTTAAAACAAGCATCTGGAGATACATACTTTGTCAAAGAAAAAATAAGAATATATTAAAGGATGGTTCAAGCAAAGTTCCCAATAGTATGTTGACCTATTTAGAGAAAAGACAATTCACTTTTCATGCAGAGGCCATGGTTAAAGCAGTACCCTAGTGTTATTGTAAACATATATTTAACACAACAAAAAATAACTTTCtgaatagaatatatatatataaactaacCAAGATAGCTTGGTAGAATGTTTGTTAAACATTTCATGATGTAATATTTTGTTCTTACCATAGGTTTTTAGTAGTTTATATTGAAAAAAGTGATTGAGAATACAGGAAATTGTGACTTATGTGTAATGTATGTAACATGTTTCTTACTTTGAGAGTTTATAATCATGGTTGTAGCAGCAATGTATTcacatttatttcaatttgttTTATGATGTTAAGCATCAAGATAAGTGTGTCACCAGAACAGTCTGTTATTTTATGCCATGATATAGTTAATTGTGTACTAGCATTGTTTTAAACCAACCTCCACATTATTACCTAATGGTTTATGAGATGTATGTATTTCAACTCTAAATCACACTTCTCGACACTACACAACCAATTATTttccttgtgtatgtgtgttcaacAAAAAGGATCAGAATCATGACATTTTCATGGCGCTTGATCAACAGACAATCCACAACGAGACACCTTTGGTTAAAAAATAATAAGGCACTGGTCTTAGTATTtcgttttttgtttatttttgttcactTTCACTGAGATTTTCTTCTAAGAAGTTACAGTTTTAATGTAATCTTTGGTGGAAGGTGAACGAAGGTATTTTTTTGGGTAACTTATCGTATTTTAATGTTTTGTCAAATGAGTCAGAATGATGTAACCTATTCTATTTTGAAATGAATGTAATTTATTGCGCTGTGCATACCTACAAGGTCGTCTCTCTTTGGTCAGCCAATGAGATGCAGATCTGAAGCAAGGGGGTGGAGTCTTAAAAAGCCACCAATAGAAAGCTACTGGAGCTCCCTTGTCTTGTCATCAACACAGTTCATCGCATTACAGTAATGAACAAGGCTTTAGAATTGCTTATtgttcaacaaaaaaaaagaaaataagaaTGTTAATTGTATAGGTGAAATTTTAccaaaaaaatgatttaaatatGTACTTTTCACTCTAGTATTTCATGATATTAAGTTGTTGCTGTGGCAACATAAAGTTGCAATTACTAGAGTTCTGTATTTTTGTAAATTATGTAATCATTAAGTTGACTTTTTTTTCTAGAACACTGCACACAACACTAGATTGTAAAGCAGATTTCAACATTTCTTATTTGTCATGATTATGACAATTTTCCTTAGCAGCCTCTAAAGGTGTAACTTTAACACTTAAGATGTAATAGATAAAGTTACCAATGTTATTTAGAATGAAATTATAACAAATTATCTATTAATTGAATAGTTAAGATGTACAACTTTTCCCCTGAGAAAGGACCACTGGTTTCATGCACACCAATGGAAAAATATTTATGAATGTAGTTTGTTAAATTGTTTATCATCAGTTAAGGATTGCACTTCTTCCGGTAAAGTAAAACATTTCATTATTACCGATGCCATACCTAATGAAATTTGCAAAGTTACTATACACCAGTAATTCTATATAATAGTCACTACCTGTTTGTATCAGAGAAATAACCTTTGAGCATCTTGCATGGAAAAAAGTTTTTATTAATAAACAATAATTTACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1756394 lncRNA upstream 5521 28512018 ~ 28515959 (+) True G1534339
TU1756237 lncRNA upstream 135186 28386030 ~ 28386294 (+) True G1534194
TU1756216 lncRNA upstream 151031 28369831 ~ 28370449 (+) True G1534173
TU1756082 lncRNA upstream 250961 28263711 ~ 28270519 (+) True G1534045
TU1755973 lncRNA upstream 376702 28143972 ~ 28144778 (+) False G1533948
TU1756383 lncRNA downstream 438 28595646 ~ 28597306 (+) False G1534330
TU1756381 lncRNA downstream 768 28595976 ~ 28597306 (+) False G1534330
TU1756384 lncRNA downstream 768 28595976 ~ 28596536 (+) False G1534330
TU1756382 lncRNA downstream 1428 28596636 ~ 28597306 (+) True G1534330
TU1756436 lncRNA downstream 15720 28610928 ~ 28611162 (+) True G1534380
LOC110496786 mRNA upstream 41812 28474349 ~ 28479668 (+) True LOC110496786
XM_021571508.2 mRNA upstream 574303 27943373 ~ 27947177 (+) False LOC110495958
LOC118941047 mRNA upstream 580682 27938032 ~ 27940798 (+) True LOC118941047
XM_021571503.2 mRNA upstream 590142 27925782 ~ 27931338 (+) False si:dkey-1h24.6
XR_002469493.2 mRNA upstream 689575 27829955 ~ 27831905 (+) False LOC110495952
LOC110496787 mRNA downstream 38603 28633811 ~ 28644096 (+) False LOC110496787
XM_021571538.2 mRNA downstream 51373 28646581 ~ 28672693 (+) False LOC110495968
XM_021571536.2 mRNA downstream 51374 28646582 ~ 28672693 (+) False LOC110495968
XR_002469497.2 mRNA downstream 137381 28732589 ~ 28735229 (+) False LOC110495972
XM_036952478.1 mRNA downstream 1587024 30182232 ~ 30186368 (+) True zgc:174945
TU1755074 other upstream 483004 27974813 ~ 28038476 (+) True G1533121
TU1755008 other upstream 571258 27947078 ~ 27950222 (+) True LOC110495958
TU1754835 other upstream 869655 27636540 ~ 27651825 (+) True LOC110495947
TU1754169 other upstream 1763803 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 2577802 25934180 ~ 25943678 (+) True LOC110496782
TU1756511 other downstream 137567 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other downstream 137567 28732775 ~ 28734991 (+) True LOC110495972
TU1756570 other downstream 208820 28804028 ~ 28804673 (+) True G1534488
TU1756577 other downstream 217621 28812829 ~ 28813103 (+) True G1534495
TU1758887 other downstream 1701923 30297131 ~ 30297346 (+) True G1536720

Expression Profile