RNA id: XM_021571534.2


Basic Information

Item Value
RNA id XM_021571534.2
length 2191
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC110495966
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28521480 ~ 28595208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGAGCAGACACTGCTCTGCTTCCTGCCTGCTTTGCTCCCCTCCCCTCCGTGgctgagagaagaaaaaaaatctctgTCTAGGCATGGGACTCTGGCTGCTGCAGCGCTCTGCAGCTCCTCCCAGGGAATGACAACAGTTCACATGGTCATTAGCTCCAGACGCTGAAGCAGGGGAACTACTCCGAGGCACATCAGCTGCACCTGGTGTCTCTTTGCTGTGGCTTAAAGAGAGAGGCACGACAGAGCTATACAGGACTCAGCAAAAAACGAGatcGTCGACAGAAAGTGCCTTGTCAGACATCCCTACTTGAGCTGCCTGCCTGCACGTCACCTCCACCAAGCATGCAACATTCCCTCCCTCGCTGTGACAGAAGATAGCTCAACCTCAGCCCCTGCCCTACCAACTCATCTTTATCTGGCTCCGTCGCTGCGCTGCCTCAGAAACCCAAGCAGAAATATTTAACTGCAGCGGTTGGGGGAACTGGCCGGACTCTCTGCCAAAAcagagtgctgactgactcattCGGAGAAGTTTAGTCAATACCCAACCCACCGTATGCACAAATTTATATTCTCGCCCAAGCAGTGCCATCACCCTCGAAATAGCACCAGTTTCAGTTATcttccccaccccctccccccttctTCACACTACCACCACATTCGGACGGTCCATCAGTCCACCCTGCCTCTGAGCATGCCCCCGTTGACCTGTCAGTGGCCTGCACCTGGGACTAACTGATTGACGAGCGACGTCTCTTGATTGACAGCTTCTCTGATAGCCGCCATCTCCCAAGCTGCGCCCACATCCAGGTTGCAAGTCCACCAACTCTGCTGCTCTGAAGTCCGCAAGGGCAAACGACTTTCACTGACCCACAATTTTTTTTGCTACACTTTTAGTTGTTTTTTTAGCACACTGAAGAGCCATTAGAGTATAGCCTCTCCTTAAACAAGTGGCTAGCTTTACCCCACCCCGGCATTGCTATGGCTTTAAATATTGCTTCGATGCGAGACACAAAATGGCTGACGCTGGAGGTGTGCCGACAGTTCCAGAGGGGGACATGTTCGCGGAGTGACGAGGAATGCAAATTTGCGCACCCGCCCAAAAGCTGCCAGGTGGAGAACGGAAGGGTGATTGCCTGCTTTGACTCGCTAAAGgGCCGATGTACGCGAGAGAACTGCAAGTACCTCCACCCCCCGGCCCACCTGAAGACCCAGCTGGAGATCAACGGCCGCAACAACCTCATTCAACAGAAGACTGCAGCAGCCATGTTGGCTCAACAGATGCCTTTCATGTTCCCTGGCACGACCATGCAGCCTACCATGCAGTCGTTTCCTATTAGCCAGGGGCTGGGCTCCAGCCCGGGGCTGAGCTACGCTCCCTACCTGACCCACATGACCCACAGCATGGGCATGATGCCCACCGAGATGCTCCAGCCCAGCACCCAGAGTATCATCGTCCCTGGAAGCCCTCCCTGCTCAATGCAGAGTTCCTCCTCCAACCAGAAGCTTCTACGCACGGACAAGCTGGAGGTGTGCCGGGAGTTCCAGCGGGGCAACTGCGCGCGTGGCGAGACGGACTGCCGCTTCGCTCACCCCAGCGACAGCCCTATGATTGACACTAGCGACAACACTGTGACCGTGTGCATGGACTACATCAAGTCACGCTGCTCCCGGGAGAAGTGCAAGTACTTCCACCCGCCGGCCCACCTGCAGGCCAAGATCAAGGCTGCGCAGCATCAGGCCAACCAGACGGCTGTGGCCGCGCAAGCTGCTGCCATGGCGTTCCCCCACGGCTGCCTGCAGCCCCTACCAAAGAGACAAGCACTTGAGAAGAGCAACGGGGCCAGCTCGCTCTTTCACCCCAGTATGTTGCACTACCAGCAGGCCTTGGCCAACGCACAGCTGCAGCAGCAGACGGCTTTCTGTGGCTTTCCCACAGTACCCATGATGTACAGTGCTACGCCTGCTACTATCTCTGCAACAACAACTCCTGTCACAAGTGTCCCCTACGCAGCAGCAGCACCAGCCAATCAGATCATCCTGAAGTAACTGTCAGGAAGGAAATGCAGTGTCAAGAAGCTGCACTGCCAAGCCCAAAACAGCCCTTTTTCTGTACATACTACCTTCCCCTTCAACAACCTGCATGCTAAGAGTGTAATACTACCAATTAACCATAAGACTTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1756394 lncRNA upstream 9151 28512018 ~ 28515959 (+) True G1534339
TU1756237 lncRNA upstream 138816 28386030 ~ 28386294 (+) True G1534194
TU1756216 lncRNA upstream 154661 28369831 ~ 28370449 (+) True G1534173
TU1756082 lncRNA upstream 254591 28263711 ~ 28270519 (+) True G1534045
TU1755974 lncRNA upstream 380487 28143972 ~ 28144623 (+) True G1533948
TU1756383 lncRNA downstream 3463 28595646 ~ 28597306 (+) False G1534330
TU1756381 lncRNA downstream 3793 28595976 ~ 28597306 (+) False G1534330
TU1756384 lncRNA downstream 3793 28595976 ~ 28596536 (+) False G1534330
TU1756382 lncRNA downstream 4453 28596636 ~ 28597306 (+) True G1534330
TU1756436 lncRNA downstream 18745 28610928 ~ 28611162 (+) True G1534380
LOC110496786 mRNA upstream 45442 28474349 ~ 28479668 (+) True LOC110496786
XM_021571508.2 mRNA upstream 577933 27943373 ~ 27947177 (+) False LOC110495958
LOC118941047 mRNA upstream 584312 27938032 ~ 27940798 (+) True LOC118941047
XM_021571503.2 mRNA upstream 593772 27925782 ~ 27931338 (+) False si:dkey-1h24.6
XR_002469493.2 mRNA upstream 693205 27829955 ~ 27831905 (+) False LOC110495952
LOC110496787 mRNA downstream 41628 28633811 ~ 28644096 (+) False LOC110496787
XM_021571538.2 mRNA downstream 54398 28646581 ~ 28672693 (+) False LOC110495968
XM_021571536.2 mRNA downstream 54399 28646582 ~ 28672693 (+) False LOC110495968
XR_002469497.2 mRNA downstream 140406 28732589 ~ 28735229 (+) False LOC110495972
XM_036952478.1 mRNA downstream 1590049 30182232 ~ 30186368 (+) True zgc:174945
TU1755074 other upstream 486634 27974813 ~ 28038476 (+) True G1533121
TU1755008 other upstream 574888 27947078 ~ 27950222 (+) True LOC110495958
TU1754835 other upstream 873285 27636540 ~ 27651825 (+) True LOC110495947
TU1754169 other upstream 1767433 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 2581432 25934180 ~ 25943678 (+) True LOC110496782
TU1756511 other downstream 140592 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other downstream 140592 28732775 ~ 28734991 (+) True LOC110495972
TU1756570 other downstream 211845 28804028 ~ 28804673 (+) True G1534488
TU1756577 other downstream 220646 28812829 ~ 28813103 (+) True G1534495
TU1758887 other downstream 1704948 30297131 ~ 30297346 (+) True G1536720

Expression Profile