RNA id: XR_002469497.2



Basic Information


Item Value
RNA id XR_002469497.2
length 1008
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110495972
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 28732589 ~ 28735229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTATATTAAAAAGACTGCTCTTAGAACTTTCTGACTGCCATTGTTTTGgggaaataagaaataagaataaTAAGAAATAAGAATAATTTCACCAAGTATCTCACaatgtgtatatttagattttttaaagtCAGACACCATTTTAATCAGGAAAATCACCTCCTTCTAATGACATACAGCGTACAGCGTCGCGCAGCATGCAGCGTACTCTGCTGTCATCGATCGCTAGATTAGAAATAGTCAGAAATTGCCTTTTTTTTCTCTACCTCTTTGTTATGCGGACATAAGCACACTTGGCACCATAAAGGTTCTACAGTCTCTCCCATTGGTGGTCTGGGCGCAGCTGGGGCAGAAGAGGAAGCCACCCCTGCTGGTCTATGAGACTTTGTGCGACCTAACTGGCCTGGCGTGTTAAGGTGCCGTATAAGTGAAGACTGAGCAGCTCTGTGGACATGGCTGAAGGATGTGTGTGGTCTGATGAAGCTGAGGGGGAAGTTCCAGCTAAGAGGACAGGATAACACTGCCATGGGGGCCCGCAGAGAGCTGGATGGAATGGTCCACTCAAAGTGGGTGAGCGATGGGGCTGAAGCGACCAAGATGGGGccacctgatgtcccaggtctacAAGGAGAGAGGAAACAGTGGATGGAGACGACAACAAGAATGGCCCTGGCTGCCCTAGGACACCATGTGGGAGAGCTGCTAGCTAGAAGGAATTGGAGACCTTTATGTTCAAGGGGACTTTGTTTGTTTTGAGTAAATATGGGGGGTTTATTTAAAAAAGTGCTTTTGCTAACCGGTGTGTGAAACATAATATTGCACGTGTGTCATTTTGGGAGTTTGCCCAAAGGAGAACTCCAACTGCATACTCATGTCCTTTCTCAAAGAGAAAAAGGGTATAATGAAATGAAGCATTCTAAGTGAATTGTGAAAACGAGTTGAGAATGTGTTGAAACTTGATTACAGAAACGAAACCATGTCTTCTGAAAATAAATCTTGAAATCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1756471 lncRNA upstream 56554 28672838 ~ 28676035 (+) True G1534403
TU1756484 lncRNA upstream 58042 28673965 ~ 28674547 (+) True G1534414
TU1756467 lncRNA upstream 59907 28668770 ~ 28672682 (+) True LOC110495968
TU1756449 lncRNA upstream 88375 28642106 ~ 28644214 (+) True LOC110496787
TU1756445 lncRNA upstream 114113 28618223 ~ 28618476 (+) True G1534388
TU1756534 lncRNA downstream 25744 28760973 ~ 28761471 (+) True G1534455
TU1756535 lncRNA downstream 26363 28761592 ~ 28762769 (+) True G1534456
TU1756537 lncRNA downstream 33587 28768816 ~ 28769054 (+) True G1534458
TU1756541 lncRNA downstream 36072 28771301 ~ 28774539 (+) False G1534461
TU1756543 lncRNA downstream 36126 28771355 ~ 28774539 (+) True G1534461
XM_021571538.2 mRNA upstream 59896 28646581 ~ 28672693 (+) False LOC110495968
XM_021571536.2 mRNA upstream 59896 28646582 ~ 28672693 (+) False LOC110495968
LOC110496787 mRNA upstream 88493 28633811 ~ 28644096 (+) False LOC110496787
XM_021571530.2 mRNA upstream 137381 28525111 ~ 28595208 (+) False LOC110495966
XM_021571533.2 mRNA upstream 140351 28525112 ~ 28592238 (+) True LOC110495966
XM_036952478.1 mRNA downstream 1447003 30182232 ~ 30186368 (+) True zgc:174945
XM_021571548.2 mRNA downstream 1498462 30233691 ~ 30254904 (+) False cckbra
XM_036951036.1 mRNA downstream 1783391 30518620 ~ 30519442 (+) True LOC118940974
LOC110496792 mRNA downstream 1799785 30535014 ~ 30539520 (+) True LOC110496792
XM_036952483.1 mRNA downstream 1991578 30726807 ~ 30749687 (+) False LOC110495985
TU1755074 other upstream 694113 27974813 ~ 28038476 (+) True G1533121
TU1755008 other upstream 782367 27947078 ~ 27950222 (+) True LOC110495958
TU1754835 other upstream 1080764 27636540 ~ 27651825 (+) True LOC110495947
TU1754169 other upstream 1974912 26757369 ~ 26757677 (+) True G1532307
TU1753187 other upstream 2788911 25934180 ~ 25943678 (+) True LOC110496782
TU1756570 other downstream 68799 28804028 ~ 28804673 (+) True G1534488
TU1756577 other downstream 77600 28812829 ~ 28813103 (+) True G1534495
TU1758887 other downstream 1561902 30297131 ~ 30297346 (+) True G1536720
TU1759494 other downstream 2087279 30822508 ~ 30828046 (+) True G1537251
TU1760344 other downstream 2833662 31568891 ~ 31572239 (+) True LOC110496006

Expression Profile