RNA id: XM_036952478.1


Basic Information

Item Value
RNA id XM_036952478.1
length 2485
RNA type mRNA
GC content 0.40
exon number 3
gene id zgc:174945
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30182232 ~ 30186368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGTTGTCAGACAGCCTCTTTCTCTCCACTGGAACTTATATCTACTCTACGCCTACACACACCCACAagcaagacacacacacgctctaaCTTGCTCTATAGCCTCTTCGGTGGACAAATCTAGCAGACTGCAGATGAGAGCTTAGTTATTGTGTGTCTATGATGGTACTTTAAACTGTTGGTCATCTATAACATATAGCTCACGTGGTGTACATCAGTTTAAGAAACTTTCAGTTTCGAGAGCTTGTGTTTGGAAATGGTTTGGCTCCGTGGATCTAAAGTGCTGTCCCTGCTGTTgacagtgtctctctgtctctgtgtgtcaccTTCTCTAGACACAGGTGCCGTAGAGTTGAAGTACACCAAGACTCCTATGGTTGGGACTGAGGGCATGCCCTTGAGGCTCACCTGTAAGGCAGTGTATGACACAAAACAATGTGGTCGTATTGATGCCTTTTGGTGTCATCACACTTTGGAAGAGTGTCCCAAGCTCATTGACCTCGGCAAGTACCTCACTGTTGTCAACGAGATGGTTATGGATGACCACAGTGTCAGACATAGACATGTTGTAACAGACTTCATAGAACTGACCCCTGCTGACCGAGGAGTCTATCAGTGCAATGCAGTATGTGAAATGGGAGGCCATACTGCCATGGGACACTACATAAATATCACAGTCAAAGCAGCTCCAATAGTTGATCAAAGAAAGGCCAACAATGGTGGACTGAACTGGACATACAGCACTGGAACAATACTGTGGTTCCTTCTCCTAATACTGGAGTTACTTGAGGCAAGATCAATAACAAAGTAACACAGAAAAAATGCACTTGTACATTTATACTTCGCAGCCAATCATAACTTAATGTAGATCTTTTGGGGTGAAGTCTCTTGTCTATTAATTATTATTTGTGTTTAACAGGTTAATCATTGAGCTGGTCTGGTAGCTGATGGCAGATGGCgtcaaaaaaaaaatcaatttcatGGAATTTCAATGGAATGGAATGCTCATTTGTTCGCTCGATCACAATTTTTTTCCAGTTGGCATGCGTGCCTATTTCTGTTTAGTTTTGTTCTCTCCCCTGTTCTTGTCACGGTGTGCTATCTCTCTACACTTCTCAGGTCTGTGTCTGTTAGAGGAAATGCCCATACAGGACAGGAAACCACACATAGCATTTGCACAAACGGAGGACTGAAGCAATGTGAACAGAGGTAGTCGCAGTCCATGTGGTTGGAAGGGTGAGGGGGAGTAAAAGGGTCTGGTAGTCTTGTGATGTTCATTATATCTCAGTTTAATTTGAAGGCGCAGGAGTGCACTGTCATACTTTTTGTTCTAGTTGTCCATACAtgccttttttttgtttgtttgtttgttctctcCCCTGTTCTTGTCATGGTGGGTTATCGCTCTACACCTTTCAGGTCTGGCGTCTGTTAGAATAAATGCCAATACAGGACAGGAAACCACACATAGCATTTGCAAAAACAAACGGAGGCCTGAAGCTATGTGAACAGTGCTATAGTAGCGGTCTATGTGGTTGGAAAGGTGAGGAGGAGTAAAGGGATATGCATTTCTTGTGATGTTTATCCTAAACTCAGTTAGATTTGAAGGCTCAGGAGTGCACTGtaatactatatactgtaggtttacaGTATTTTGAAAGAAGTTATTATGAATTGCGAAACTGAGCGATATTCCGTGTTGGCTAAACCACTAGGTCAGAGCTTCCTCAAATACATTTTGGTTGTATAGAGGTGTTCCCCCAGAGTTATTTTATGTGTACCCCAAAAAACACCAGATAAGAAAAGCATGGTGTGTCATACAATATATGGAAATTAGCCATTTGACCATTATAAACTGACAAACTACATAAACATTTGTGCACTATATCTGCAATCTTATAAAACAATCAAACATTATTTTGATGATTACAACTGCAATTATCAAAGCGCTTTATAAGTTTACATGTATTAATGTCTCAGCAAAACCATATCTACACATTTAAATGAGTGGAAATGACCACTTCTGCCGTAGGGTAAACTTTAAAGGTATGGAGATTTAAGGAGGAGACTACCATGCACCAGTTGTTGCCACAAAACAAGTGAAGACCCTTTTATTAGCCTCCCTTCCCAGGCTAAAGACACAAGTCTTTGAACGAGTTCTTATCACATGACAGCAAGCGCCCAGGTACTTGGAGAATTGATTATGGTTCATGTTAATATTGGTTAAGCCTTGTTTGGTATCACCATGCTGATATTAGACAAACTACTTTATTTTTCTATAATGTATTTGATGCTCATGTGTTAATTGTGTATTGGTCTTACATTAATTTCTCATGAAAGCAACAGCATATTGGCTTTTCTCTAACAATTCCTTCTTATGAGGGAACGCAAACCTTGTTACACATTTTGTTTAACATCTATTACAGATCTGTGCTTTTTTATTGTTGTTTACTGATATTAAATAGTATTTATAAAAATCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1758594 lncRNA upstream 106409 30075589 ~ 30075823 (+) True G1536434
TU1758505 lncRNA upstream 171048 30010950 ~ 30011184 (+) True G1536347
TU1758469 lncRNA upstream 207595 29974413 ~ 29974637 (+) True G1536311
TU1758462 lncRNA upstream 216591 29965337 ~ 29965641 (+) True G1536304
TU1758421 lncRNA upstream 244860 29937109 ~ 29937372 (+) True G1536263
TU1758692 lncRNA downstream 40842 30227210 ~ 30227686 (+) True G1536526
TU1758700 lncRNA downstream 56193 30242561 ~ 30242865 (+) True G1536534
TU1758701 lncRNA downstream 58180 30244548 ~ 30244916 (+) True G1536535
TU1758704 lncRNA downstream 61728 30248096 ~ 30248325 (+) True G1536538
TU1758706 lncRNA downstream 65144 30251512 ~ 30251747 (+) True G1536540
XR_002469497.2 mRNA upstream 1447003 28732589 ~ 28735229 (+) False LOC110495972
XM_021571538.2 mRNA upstream 1509539 28646581 ~ 28672693 (+) False LOC110495968
XM_021571536.2 mRNA upstream 1509539 28646582 ~ 28672693 (+) False LOC110495968
LOC110496787 mRNA upstream 1538136 28633811 ~ 28644096 (+) False LOC110496787
XM_021571533.2 mRNA upstream 1589994 28525112 ~ 28592238 (+) True LOC110495966
XM_021571548.2 mRNA downstream 47323 30233691 ~ 30254904 (+) False cckbra
XM_036951036.1 mRNA downstream 332252 30518620 ~ 30519442 (+) True LOC118940974
LOC110496792 mRNA downstream 348646 30535014 ~ 30539520 (+) True LOC110496792
XM_036952483.1 mRNA downstream 540439 30726807 ~ 30749687 (+) False LOC110495985
XM_021571555.2 mRNA downstream 540490 30726858 ~ 30749687 (+) False LOC110495985
TU1756577 other upstream 1369129 28812829 ~ 28813103 (+) True G1534495
TU1756570 other upstream 1377559 28804028 ~ 28804673 (+) True G1534488
TU1756511 other upstream 1447004 28732775 ~ 28735228 (+) False LOC110495972
TU1756512 other upstream 1447241 28732775 ~ 28734991 (+) True LOC110495972
TU1755074 other upstream 2143756 27974813 ~ 28038476 (+) True G1533121
TU1758887 other downstream 110763 30297131 ~ 30297346 (+) True G1536720
TU1759494 other downstream 636140 30822508 ~ 30828046 (+) True G1537251
TU1760344 other downstream 1382523 31568891 ~ 31572239 (+) True LOC110496006
TU1760346 other downstream 1391799 31578167 ~ 31580320 (+) True LOC110496008
TU1760548 other downstream 1567342 31753710 ~ 31754191 (+) True G1538208

Expression Profile