RNA id: XM_036952480.1


Basic Information

Item Value
RNA id XM_036952480.1
length 3998
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC110515180
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30498183 ~ 30502180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGGAGACTAACAATGGTAGACACGGAAGAAACCTGTAAGCCTGAGCGTCTTGCCCTACCCAGGCACCATGGTAAACCCTATTCAGATCACCCATCGTCTACAGCACTGCTGGATTCCATTGACAAATCTATCTGGAGTACCTCACCTTTCGATGTGGGCAAACTACAAGTTACCCCAGTTGCCATCACCCTGTTGGATCCGTCTCAACCTCCAATCTACAGACCCCAATATCGTCTCAAGCCTGAGCAGGTAGAGGGGATTCGCCCCACTATTGAGGGGCTATTGGGAGCTAACTGCATTTACCGAACTCAATCTCCATGGAACACCCCAATTCTGCCTGTTCTGAAGGCAGATGGtgaaacctacaggatggtacaaGACTTCAGAGCTATCAATGAAGCTACTTTGGGGGTTGACCTACCTGTTCCTGATCCACACATCACCCTGAGCAATCTGTCGCCGAAACACCAATATTTCACTGTCGTGGACCTTGCTAATGCTTTCTTTAGCGTTCCTCTGGATGAGGGGTCTCAGCCTCTGTTTGCATTCACTTACGAAAACCAGCAGTACACGTATTCTGTGCTTCCCCAGGGCTACCGTTGTTCCCCCGGAATTTTCAATTACATCCTGAAAAAACACTTGGGAGAACTCACCCTTCCGGAAGGCACGGTACTCATCCAATACGTTGACGATCTCCTCCTGGGAGCCCCCACTTCGGACCTGTGCTTAGAAATCACCAAAGTCCTGCTGGACTTTTTGGCTAGCAAAGGGTACAAGGTCAAGAAATCAAAAGTCCAGATGTGCAGAAGGACAGTACTCTTTTTGGGTAGAGAAATATCAGGAGACGGAGCTGGACTCTCTACTTCACACAGAAGCTCCATTCTTCACCATCCCAGACCAACCACAGTTGCTGGTATGCTCTCGTTTTTGGGTTTGACGGGGTACAGCCGTACACACATTCCTGACTACACTGCCAGGACTGAACCACTGAGGGAAATAGTCAGACATGCAGGCTCAAGAAACCTTCATGCTCCTCTTATCTGGTCACCTGAGGCCTCTGCTGCATTTGGCCAGTTGAAAACAGACTTGGCTGTGGCTGCAGCTCTCACTGCACCTGACTATGGCAAGACtttccatttggatgtttctgaaaaagaaggattcacctcatccgtTCTTTTCCAGAAAcatgagggggagagaagagtccTGATGTACCACTCCTCAAAATTGGATCACATTGAAATGGGGCAAACCACATGCTCAAGATACGTTGCAGCTGTTGCTAAAGCCATTGAAAAAACTGCTCACCTCGTAATGTGCCACAAAATGGAGATCCACACCCACCATGGTGTTGCAGCGTACTTGATGGCGAAGGAATTCACCTTCAGtgcagagagaaaaaacaaaATTCAGAACAAATGTACACAGTCACACATCACGTTTGTCAACACAGACAAGAACATGGCTGATGCCCTTAATGCGGAAGAAGGAATGACCCACGTCTGCGCAGAAAGAGCTGCTCAAGAACTTAAACTCAGACCAGACCTGGAAAATGAACCCATATTGACTGCAGACCTATGGCTGTACACTGACGGGTGTTGTTACAGAGGAGAAGAAGGCAACATAGCAGCATACGCAGTAGTACAACAGACTGTGGATGGAGCTCACACCACCCTGGAATCAGGTATAATACCTCAGCCCGCATCAGCCCAATTGGCAGAGATAATTGGACTCACCCAAGCATTAACACTGGCCAAAGGGAAAAAGGTCAACATATACACTGACTCAGCATATGCTCATGGAGCAGTACACATCGATGGACCACAATGGGTCAGACGAAACTTTACCACTACTGGAAATCTACCAATCAAGCACAAGACCCAGATGGAGCGTCTGATTGCTGCTGTATCACTTCCTGAAAAAGTGGCCATAATGAAATGCAAGGGCCATCAGATATTGAACTCCAAGATCAGCAAGGGAAATGATGCTGCAGACCAGGCAGCTAAGAAAGCAGGAGGATACACTCCCAGACAAATGGTTCTCCAAATCAGTCCACCTAGGACTGAATTGACTAACCAACACATCAAAGAACTACAACAAGCAGCCGGACCATATGAACACTCAgtgtggggacagaggggagcgACGAAAGGTCCTGATGAACTGTGGCGATGCCATGATGGCAGACTAGTGGCCCCTGCAAACCTCTGTCCTGAACTAATCAGAGAAGCACATGGACCAACACACGAAGGGAAACTGAAGACTCTACAGAGAGTCTCCTACGTATGGTGGCATCCATACATGAAAGAAATGACAGATTTGTTCTGTGACAGTTGTGCCATCTGTGGAAGTCACAATCCAAAGAAACCTTACCAAACACCAATGGGTCACTATCCGGTACCCAATGCCTGTTTCCAAGACATCAGCATAGATTTTACAGACATGGGAGCGGATCAGGTGAAGGGAGGAAAGAGATATTTGCTAGTAATGGTAGACAGATTCTCTAAGTGGGTAGAGGCCATTCCTACAGCAAAGGAGGATGCGAAGTCAGTCATTAAGTGGCTACAAACGGAACTTATACCTAGGTATGGGGTTCCTCGACAAATCAGGTCCGACAATGGGTCCCACTTCTCAAATCAGCACCtaagacaggtggaggagaggtttgGCATTACACACAAGTTTGGCTCAGTGTATAAGCCGCAGTCGCAGGGCCTTGTGGAACGCTGTAATCAAAATCtgaaagctaagatagctaaagtgTGTGCAGGGACCAAATTGACCTGGGTGGAAGCCCTGCCCCTGGCACTGATGGCCATGAGGTCCTCACCAGGTGCAGGGACACATCTTTCACCCCATGAAATAATGACAGGTAGAGTAATGCCAGGGCCACCAAgagagggaggtcatatgcccccTCTTGATGTGCACcaaatagggatgtctgactatGTGAAGAAATTGACGGAATTGTCTGCAGCTCTCTCCAAAAAGATACACCGTGTCGCAGAGAGGGAGCTGACTGACGTCCCGGAACAACCAAGGGTAAAAGTTGGGGACTGGGTAAGGATCaaggtccacaagagaaagtgggctgatcccaggtggactggaccgtacgaagtgaaggaggttacttcacactcagtccaggtcaaaggtaaatcaggcgtACCTTGGCACCACCTGACACATTGTACACCAGCCCCAACCCCTGCCAGAACTCTGGCTGAAGTAAGAAGTGATTTACTCACATCCAATTCGAATTCAAATTCTGACATCCCTCCCGTCTGATCATGTGGAGGAGACTCCCATCCtcagatgatagggacactagagTAGCACCATGGGCTAGAAGGGCTAGGAGACCATGGGAAAGACTGGGTTGTTCTGGCCCATTGTTTGTCCTAATTATAGTCAATGTTGTTTTGACATTGGGAGTAATGATATGGGCAGCCCAGCGTATAATCACTGACCAGGAACAGACTACCCAGCTAAACATCACCAATGCTTCAATATTCTCGGATACGCATGTTCTGTCTAAACGTCAAGTTCAGAATAATGACTTTGAGTGTACTGCAGAATTGATTAGGTCAGCTACTCTGTGTATCCCGCCTAACGCTACTACCACTGTTATACTTACCTGGGGTGTTATTGGAAGCCCAGGTGGCGGTTATGGTACTCATGCAATCAGTTGGTCTAGATCAGTGTGGTACATGACGTGGAAGAATTTAGTGGCAGAGACTGGTCCTGACTGGTCTAGCTGGACAGTGCATCAGATGGCACTCCTGTGGCGGAGCAGGTTGACGTTAACTAAAGTTACAACTGGTTTGAAATTGGTAATCAAACACAGGGAAGGTGGTATCGGCTGTACCCCCTTCTTATTGGCACCATGGGAAGAGCAGAGAGTCTATTGGCATCTTAAGATTTGTTTTACTAACATAACCACCCCTCAAGCTGTTCTTTCTAAGCGACAGGTGGTATCCACTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759171 lncRNA downstream 41388 30455676 ~ 30456795 (-) True G1536987
TU1759113 lncRNA downstream 90013 30389023 ~ 30408170 (-) True G1536932
TU1759110 lncRNA downstream 109999 30387939 ~ 30388184 (-) True G1536930
TU1759107 lncRNA downstream 111851 30386037 ~ 30386332 (-) True G1536927
TU1759057 lncRNA downstream 185523 30307668 ~ 30312660 (-) True G1536877
TU1759198 lncRNA upstream 2011 30504191 ~ 30505718 (-) True G1537010
TU1759232 lncRNA upstream 34186 30536366 ~ 30536579 (-) True G1537032
TU1759261 lncRNA upstream 60828 30563008 ~ 30568315 (-) False G1537058
TU1759260 lncRNA upstream 61600 30563780 ~ 30568315 (-) True G1537058
TU1759287 lncRNA upstream 66239 30568419 ~ 30598012 (-) True G1537072
LOC110496791 mRNA downstream 349 30489683 ~ 30497834 (-) True LOC110496791
XM_036952479.1 mRNA downstream 22124 30456866 ~ 30476059 (-) True LOC110495980
LOC110496790 mRNA downstream 56528 30417843 ~ 30441655 (-) True LOC110496790
XM_021571549.2 mRNA downstream 101314 30317376 ~ 30396869 (-) True LOC110495979
XM_021571547.2 mRNA downstream 656584 29414177 ~ 29841599 (-) False LOC110495975
XM_021571552.2 mRNA upstream 104514 30606694 ~ 30612658 (-) True ndufv1
XM_021571553.2 mRNA upstream 118550 30620730 ~ 30637860 (-) True hcn3
XM_036951037.1 mRNA upstream 142330 30644510 ~ 30649112 (-) True LOC110496793
XM_036952481.1 mRNA upstream 159421 30661601 ~ 30674549 (-) True LOC110496794
XM_021571576.2 mRNA upstream 285931 30788111 ~ 30802586 (-) False LOC110495990
TU1758870 other downstream 213421 30284372 ~ 30284762 (-) True G1536703
TU1756202 other downstream 2145565 28351378 ~ 28352618 (-) True LOC110495963
TU1755852 other downstream 2461567 28034964 ~ 28036616 (-) False LOC110495955
TU1755806 other downstream 2583663 27861046 ~ 27914520 (-) True LOC110496785
TU1755743 other downstream 2699570 27754174 ~ 27798613 (-) True LOC110495948
TU1759222 other upstream 17712 30519892 ~ 30525373 (-) True G1537022
TU1759310 other upstream 100536 30602716 ~ 30603392 (-) True G1537091
TU1759986 other upstream 409647 30911827 ~ 30914295 (-) False LOC110495992
TU1759987 other upstream 412189 30914369 ~ 30953308 (-) True LOC110495992
TU1760029 other upstream 509698 31011878 ~ 31014176 (-) True LOC110495994

Expression Profile