RNA id: XM_021571553.2


Basic Information

Item Value
RNA id XM_021571553.2
length 3446
RNA type mRNA
GC content 0.47
exon number 8
gene id hcn3
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30620730 ~ 30637860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctaaaaaaataTGTAAAGTTTTCTAAAGTatctaatctgattacaatatttttgcttgtAATGTAATTTATTACATTCACCTTGAATAATCAGCAATAGGGGTGTTGCAATAAATCTTCAGTTACTGTTAGTTTAGTTTAGCTTACTCTTTGTTAGTAACTTCAGGCGGTACTTCATTTTTTTAAAGGAAGATTACCCCTCTAAGATCTCCATCTCCTTGTGCAATGTTGGTGTTGTCCCCCTATCATTTGTTGCTCCTGCAGCAACAGGTAAACTTTGCAAATCCGACACGTGCGCCTTCGAGACTCGCGAGTCTCTGTGGGAGCGGGACATTCCGTAGTAGAAGGATGAGAAAGGTGACAGGAACTCCGCCGTCATGACAACAATCCGATTACATTGAGACACTTATCTGTGCAGGCTATTTATGCGCATACCAGCAGTGCTTAGGAGCAAGACCCACTTAGAAGAACCGTCGCATGCACTGAACAAGgggtatttatttgtatttttatactAATTGTAATAGAACTAAAGAGAAAGTATTTATTGAGCAACATTGCAACTTTTCTTTGAGCTAGCCTACCTATGTATGGAGGAATTATCTGTGGACATTTAGGCTATCAAGTGGAGGACACTACGCGCAAGAAAAGGTTGCCAAATGTTAAGGATTTAATCAAATGCATATTGTTGATTCGAAGTTTTCTTTTGAACAGTAATCATGTCAAATGTACGCATCAGGCTAAATTTATGTTGGGTTTTAGCGTGCATTCGCGCGTTTCGACGGGCTGCAGAATAGGCTGACCAAAATAGGCATAGGCCGATTTTTTTACTGTCGTCTTGTTCCTTGAGGAAAGTTCTGAAAAACATATATAGAAATCTagtttctgttttttatattgGAAGAAAAAGAGACTGTGCTCATCCTCTGTCATTCAGGGGCTGATGAAGGTAACCTACATGGTGTAAAGATGGATACTAGTCCTACAAGAAGTATTGATGGACAGACAGGTATGGGGGAGAGCCCTGCCCGCAATGGGGAGTCCAGGCACCGAGGCAGCACCAGGGGCAGCTTCCACGCAGTTGCCACATGGAGCTCATCCTCCCAGTCCTCCCAAAAGGAAGATCTAGGGAGCAATGTTAGTAAGAGACTTAATTCTATTGTCAACTCCCAATACAATGACCATCACAGCACCACAGCAGATCCCAAGGGCCAACTGTGGGTGTCAGCAGAACCTGACACAACCACCACCAATACCGCCACTACCACATTCTCCAAAGGAGCAGAAGTCATCACTTCTACTCAGGCCTTAGAGACGGAGGAGAATGACCATGTGGACCAGTCCACCtactttcagaggcagtttggggcGCTGCTCCAGCCAGGGGTCAACAAGTTCTCCCTGCGCATGTTTGGTAGTCACAAGGGCGTGGCAGCGGAGCAGGCCAGGGTCAAATCCTTTGGAGTGTGGATCATCCACCCCTACAGTGACTTCAGGTTCTATTGGGACATTGTGATGCTACTCCTGATGATGTGCAACCTGGTCATCCTCCCCTGGGGCATCACCTTCTTTGAAGACCAGAAAACTTTGCCCTGGATCTCATTCAACGTCATCTCTGACACCTGCTTCCTGGTCGACCTGGTCCTCAACTTCCGCACGGGCGTCCTAGAGGGAGACGACCAGATCATCCTGGACCCCAAGGTGATCCGTATGCGTTACCTGAAGACTTGGTTCGTGGTGGACTTCATCTCCTCCATCCCAATGGACTACATCTTCCTGATAGTGGACCTGGAGGCCCAGATGGAGGCTTCGGATGTGTATCGCACGGCCCGTGCTCTCCGTATCGTCCGCTTCACCAAGATCCTCAGCCTGCTGCGCCTCCTGAGACTGTCCCGCTTCATCCGCTACATCCATCagtgggaggagATATTCCACATGACCTATGACCTGGCCAGTGCTGTTGTGCGTATAGTAAACCTGATTGGTATGATGCTACTGCTGTGCCATTGGGACGGCTGCATGCAATTCATGGTGCCCATGTTGCAGGATTTCCCACCAGATTGCTGGGTTACCAAGAACAACATGGTGAATTCCACATGGCATTTACAGTACTCATATGCCCTGTTCATGGCAATGAGCCACATGTTGTGTATAGGATATGGTGCCCAGGCTCCCGAGGGCATGACGGACGTATGGCTGACTATCATGAGTATGATTGTGGGTGCCACCTGCTATGCCATGTTTCTGGGCCATGCCGCCAACCTGGTTCAGTCCATAGACGCCTCCCGACGACAGTATCAAGATAAGTATAAGCAGGTGGAGCAGTACATGTCGTTCCATAAGCTGCCGGCGGACGTGAGGCAGAGGATCCATGAGTACTATGAGATTCGCTTCCAAGGCAAGATGTTTGACGAAGACAGTATTCTGGGAGAACTCAGCGACCCGCTCAAGGAGGAAATTGTGAGCTTCAACTGCCGTGGGTTGGTAGCCAACATGCCACTGTTTGCCAATACAGATCCTCATTTTGTAACAGTGATTTTGACCAAGCTGCGCTTTGAGGTCTTTCAGCCTAATGACTTCATCATACGGGAGGGAACACTAGGGCGGAAGATGTACTTTGTCCAACACGGCTGTGTTACCGTGCTCCCCCGTGGAAAAAAAGAGATACAGCTTAGCGATGGAGCCTACTTTGGGGaGATCTGCCTGCTGACCCGTGGACGTCGGACGGCAAGCGTGAGGGCTGATACGTACTGCCGCCTCTACTCCCTGAGTGTGGACAGCTTCAACGAGGTCCTGGAGGAGCACCCCCTGATGAGGAGGGCCTTTGAGAGCGTGGCTGTGGACCGTCTGGACCGGGTACAGGGGCGAGAACCCTTCATGAGCTTCTCCGCAGACTGACTGACACTTATGGGCTCATAGAGGAGAGCTGACACAGGCAGCACAGTGGAAACCTATATGACAAGATGGAGGGCATTCAACTGATAAAAATCTGACAGTCAATGGACATGTTGCTTTTGTTTTTAGTTTGGGAACCTACTTATAGAAAGTTATGCTTTAAATATGTTTATTAAGAAGCATATTACAATGGAAACAAGTGTATAAACATATCAATGAGCTTCCCTTTTTAACAGATAAAATAACAGTAATGTACATCAAAacaaaatattaaataaaaattAATAGTACCCCCCTCTTCACACCCAGTCccccacatacagtgcatttggaaagtatttagacctcttgaatttttccacattttgttacgttacagccttattctaaaattgattaaataggtgttttcctcatcaatctacacacaataccgcataatgacaaataaaaaacagGGTATTCAGTCCATATACTCAgaaatttgttgaagcacctttggcagcgattacagcctcaagtcttcttgggtatgacgctataagcttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759296 lncRNA downstream 22553 30576856 ~ 30598177 (-) True G1537077
TU1759301 lncRNA downstream 27607 30588248 ~ 30593123 (-) True G1537082
TU1759298 lncRNA downstream 37559 30580980 ~ 30583171 (-) True G1537079
TU1759295 lncRNA downstream 40905 30573850 ~ 30579825 (-) True G1537076
TU1759294 lncRNA downstream 43022 30573850 ~ 30577708 (-) False G1537076
TU1759362 lncRNA upstream 2115 30639975 ~ 30640433 (-) True G1537140
TU1759398 lncRNA upstream 50986 30688846 ~ 30689666 (-) True G1537170
TU1759400 lncRNA upstream 52434 30690294 ~ 30690881 (-) True G1537172
TU1759422 lncRNA upstream 66100 30703960 ~ 30704314 (-) True G1537194
TU1759907 lncRNA upstream 83543 30721403 ~ 30721673 (-) True G1537631
XM_021571552.2 mRNA downstream 8072 30606694 ~ 30612658 (-) True ndufv1
XM_036952480.1 mRNA downstream 118550 30498183 ~ 30502180 (-) True LOC110515180
LOC110496791 mRNA downstream 122896 30489683 ~ 30497834 (-) True LOC110496791
XM_036952479.1 mRNA downstream 144671 30456866 ~ 30476059 (-) True LOC110495980
LOC110496790 mRNA downstream 179075 30417843 ~ 30441655 (-) True LOC110496790
XM_036951037.1 mRNA upstream 6650 30644510 ~ 30649112 (-) True LOC110496793
XM_036952481.1 mRNA upstream 23741 30661601 ~ 30674549 (-) True LOC110496794
XM_021571576.2 mRNA upstream 150251 30788111 ~ 30802586 (-) False LOC110495990
XM_021571577.2 mRNA upstream 150251 30788111 ~ 30802586 (-) True LOC110495990
XM_021571571.2 mRNA upstream 165323 30803183 ~ 30882954 (-) False ubap2l
TU1759310 other downstream 17338 30602716 ~ 30603392 (-) True G1537091
TU1759222 other downstream 95357 30519892 ~ 30525373 (-) True G1537022
TU1758870 other downstream 335968 30284372 ~ 30284762 (-) True G1536703
TU1756202 other downstream 2268112 28351378 ~ 28352618 (-) True LOC110495963
TU1755852 other downstream 2584114 28034964 ~ 28036616 (-) False LOC110495955
TU1759986 other upstream 273967 30911827 ~ 30914295 (-) False LOC110495992
TU1759987 other upstream 276509 30914369 ~ 30953308 (-) True LOC110495992
TU1760029 other upstream 374018 31011878 ~ 31014176 (-) True LOC110495994
TU1760774 other upstream 878251 31516111 ~ 31523456 (-) True LOC110496004
TU1760868 other upstream 1047892 31685752 ~ 31692671 (-) True LOC100136047

Expression Profile