RNA id: XM_021571555.2


Basic Information

Item Value
RNA id XM_021571555.2
length 3820
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110495985
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30726807 ~ 30749687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCAATTTAGGCTAAATTGAATTCTAAACGTCACCCCGGTCAAAAACGGGCTCTGCGATGGGCCTGCGCTGGTGTTCCAGTTTAGCCAACGTTCTTTTGCAAttttcagccttgggtgaatttcgacttgttctattgtccagcctaccccTGGTTCTGCCGATTGCACTTTTAAGACAGTCCCATAGCCGCAAGTGCATAATATTCCCCCATTGAAAGCCAACGTAAAGTCACTTTTTGAAAACGGAGAAAATAAAGGTTATACCTTGCGCTCTACCATCGGAATTAAGATCTTCAGTTGAAGATGTATTGACGAGCAAGCTCCGAATATCTAACCACTATCCAAACTGGAAACAAACCTACTGCGGTGAATCTCGGCTGACATTAGCTGGAAAACTACGCTAGCTGAGTAAGAAGGACCCAACCCCTCAGCTCATCCCAGCAAAACAagcagagagtaaagacagtgtgGGGTATCCAGAATTTTGACTAGTCACTCGGTCCAGTTTATTTGACTTGACGACCCTGGATCAGAGCTGTGTTGAAACGCACCAGAACAATCGCTTCGACGAAAATAACGTTAACGCAAGGTATTGCGTTTTAGTCAGCTAGCTTGTTGAAGCTTAGCAAGAAAAGTGCACGTTTCAGAAATGGCCACAGCCGGAACAGTTCATTCAGGTCCAGCGAGTTCCACTGTAGGCTCAACTGGGACTCAGAAGATAGCTTCTTTAGAGGTTCTAGGGTCCTCAGGCTCGTCTCAAACTATAAAGAAGACTATTGGCCACCGTGGGCTTGACCCCACTGGGGAGACCACCTACAAGAAGACTACCTCGTCTGCCCTGAAAGGTGCCATCCAGTTGGGcatcacacacacagtgggcAGCCTGAGCCAAAAACCTGAGAGAGATGTACTCATGCAGGACTTTGAAGTGGTAGAGAGCATCTTTTTCCCCAGTGAGGGCAGTAACCTGACCCCAGCCCACCACTACAGTGACTTCAGGTTCAAGACCTACGCTCCCATCGCCTTCCGCTACTTCAGGGAGATGTTTGGTATCCGACCAGACGATTACCTGTACTCGCTGTGTAACGAGGAACTGATTGAGCTGTCCAACTCTGGAGCCAGCGGATCTCTGTTCTACGTCTCCAGCGATGACGAGTTCATCATTAAGACTGTGCAGCACAAAGAGGCTGAGTTCTTACAGAAACTATTGCCTGGCTACTTCATGAACCTGAACCAGAACAAGCGAACCTTGCTGCCAAAGTTCTACGGTCTCTACTGCATCCAGGCAGGAGGAAAGAACATCCGCATTGTTGTCATGAACAACCTGCTCCCGCGCGCCGTGCGCATGCACCTCAAGTACGACATGAAGGGCTCCACCTATAAGAGACGAGCCTCGGCCAAGGAGCGAGAAAGGGCTGTGCCCACGTTCAAGGATCTGGACTTCATCCAGGACCTTCCCGATGGTCTTCTGTTGGAACCAGACAATTACAACGCCCTCAGCAAGACCATCCAGAGAGACTGcctgCTGCTACAGAGCTTTAAGATCATGGACTACAGCATGCTGGTGGGGATCCACAACCTGGAGCAGGCGGCCCGGGAGCGGGCTGGAGAGGAGGTGGCCGACCAGAGGCCCCCACCGTCTCAGGGCCAAAAGTCCCTCTACTGCACTGCCATAGAGGCCATCCAAGGAGAGGCGCACGGCAAGGGAGCAGTGGACACTGAGGACAACATGGGAGGTATTCCAGCACGTAATTCCAAGGGCAAGAGGATGCTGGTGTACATTGGTATAATCGACATTCTGCAGTCCTACAGGTTTGTGAAGAAGATCGAGCACTCCTGGAAAGCTCTGGTCCATGATGGGGATACAGTGTCAGTGCACAGACCAGGTTTCTACGCTGACCGCTTTCAGAAATTCATGTGCAACACAGTCTTCAAGAAGATTCCATTGAAGACATCCCCATCAAAGAAGACCCGAGTGGGGACCCAGGGAGGCTTACGGAGGGCCAACACTGCAAGCTCCAGACCCTTTCCATTCCCCCAGcccagcagtagcagcagcctaGTAGTCCCACACTCCCAAAGTACAGAGACTGAGGGAGTCAGCGTGGTGCAGTCAGGATGCCCTGACATACCACCAAATACCCCCACACACGATGTTGTCACCAGTAACTCTGTTGAAACAACCCACTTCAATTCCTTGTTGGGAAGCTCGAAGCTCGCTACCACAGCTCCCTCCGTCAGATCTGTGGGAGAGGAGGTCCATGAGGCAGCCAGTACAGAGGACGCTAGCACCCCCAAAAGTTTTGAAGCAGTGACCTCAGTGTCGTCAGTTAATGAGTGCATCGGTGGATGTGACGTCATCTCACTCAGTGACATAGTTCCTCAGACAAGCAGCTGTTATTGAACAATTTACTGTGAAAGACTGAAATGGACTGTAATGTGAGGACAATTAGGTCAAAGCAAGTCAATGGATGGGATGAGTGTAAGATGAAAGAAACTTTTTGAAGGCCTAATGAAAGAGAAATAATGGAAGGATAATGCGACAGAGGTAAAGGAGGGAAACAGAAAATAAAGACTAAGAGGACTACATTTGGAATGCTACACACTCCAGATGCTATTATGGGGACCATGCATCCAAATTCCATTGATGGGATCCTTGTTTAAACTTTCCAAACCCTGCACAGGATTAGGTAGTACTGTGTCACAGTGCATAGGTGCCTTTTCTATTAGACCACAGTTGGTGGTGTATTAGACAAGTACATCTGAGTTGTAGTGCATTGCATCTCCGAACGGGTGCCTCTGTCAGGACCTGCACATCTCTGAAACTAAGAGACTCCTAGTATTGTTATAGTCGAGGCAATGGTAGACATGCTACATTAATAAGTTGCCTTATGTGAGAAGAGAAGAGGCTAAACAAACCTTCACAACAGTGACCAAATGGCGTCAAGACTGTTTCTCCCTTTTGTGATTCATTCATCCTGCCTGTGAATTGGATTGCTGGAGATCTTCCATATTGAGCTTTCCTGTACTATACTATCATTACGTTATATTGGTATATATGATTTTATTCCAAACTGTGGCACTATGACAGAATGCCACTTGGTGTTCAGAAGTACTGTTTGAAGaatttttaattaaaaaatgttttttcccTGTGACATATTTAGATGTTTGGCCTTGCTCCACAAGCTCACTGTGAATGTTACTACACACCCTGTATGCTGGAATGGCTAGAATGTACAGTGTTTGGTAAACCCATTAAGAAAGTATTTTAGGGTATGAAGCAAGCAGGGCCTATAGTTTCTGGTGTGTAAAGATGGGTCTTAGCTAGCGCTTCGTGGCATGAGACAGTTGGGCTAGAGGGACTCAGTCTGGAAACAGTGTCCCCTTATAGAACAACATTTTACTATGGAAAAGCACATATACAAGGATCAACAAATAGTTTCTCAACAGGATTATTTTTAGGGTATGAAAGAATACTTCTAATGATCCCCTATACATTTTTATAACTCATTCCACAACCAGAATCAATATGGAATGATTTTACACCGTTATAATGCCTATGTATAATCCCTACCTTTTCTATAACAGGAAGCAGCCACAGCACTTCTGTAGGTCGATACTTGAGGGTTCAGGTGTGAAATGTTGTCCCCTTTTTATTTTTCCATTGATCCTCCAATGACAAAGGTGTTATTTAAAACAATATGACAGGTTCAGCCATAGAGGTACACTGAACACTAATATAAATacgacatgtaaagtgttggttccatgtttcatgagctgaaataaaagatccctaaaattttccatatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759436 lncRNA upstream 6690 30719926 ~ 30720168 (+) True G1537208
TU1759434 lncRNA upstream 8680 30717939 ~ 30718178 (+) True G1537206
TU1759421 lncRNA upstream 22547 30703971 ~ 30704311 (+) True G1537193
TU1759399 lncRNA upstream 35977 30690347 ~ 30690881 (+) True G1537171
TU1759397 lncRNA upstream 37126 30689299 ~ 30689732 (+) True G1537169
TU1759466 lncRNA downstream 13368 30763055 ~ 30763335 (+) True G1537226
TU1759516 lncRNA downstream 105362 30855049 ~ 30856645 (+) True G1537273
TU1759561 lncRNA downstream 205419 30955106 ~ 30965748 (+) True G1537314
TU1759634 lncRNA downstream 276321 31026008 ~ 31026210 (+) True G1537364
TU1759636 lncRNA downstream 279791 31029478 ~ 31029683 (+) True G1537366
LOC110496792 mRNA upstream 187338 30535014 ~ 30539520 (+) True LOC110496792
XM_036951036.1 mRNA upstream 207416 30518620 ~ 30519442 (+) True LOC118940974
XM_021571548.2 mRNA upstream 471954 30233691 ~ 30254904 (+) False cckbra
XM_036952478.1 mRNA upstream 540490 30182232 ~ 30186368 (+) True zgc:174945
XR_002469497.2 mRNA upstream 1991629 28732589 ~ 28735229 (+) False LOC110495972
LOC110496795 mRNA downstream 10880 30760567 ~ 30762897 (+) True LOC110496795
XM_021571558.2 mRNA downstream 17451 30767138 ~ 30776858 (+) False znf687b
XM_021571561.2 mRNA downstream 17451 30767138 ~ 30776858 (+) False znf687b
XM_021571559.2 mRNA downstream 17633 30767320 ~ 30776858 (+) True znf687b
XM_021571579.2 mRNA downstream 154337 30904024 ~ 30908524 (+) False LOC110495991
TU1758887 other upstream 429512 30297131 ~ 30297346 (+) True G1536720
TU1756577 other upstream 1913755 28812829 ~ 28813103 (+) True G1534495
TU1756570 other upstream 1922185 28804028 ~ 28804673 (+) True G1534488
TU1756511 other upstream 1991630 28732775 ~ 28735228 (+) False LOC110495972
TU1759494 other downstream 72821 30822508 ~ 30828046 (+) True G1537251
TU1760344 other downstream 819204 31568891 ~ 31572239 (+) True LOC110496006
TU1760346 other downstream 828480 31578167 ~ 31580320 (+) True LOC110496008
TU1760548 other downstream 1004023 31753710 ~ 31754191 (+) True G1538208
TU1762072 other downstream 2270541 33020228 ~ 33020544 (+) True G1539641

Expression Profile