RNA id: XM_021571571.2


Basic Information

Item Value
RNA id XM_021571571.2
length 5042
RNA type mRNA
GC content 0.53
exon number 29
gene id ubap2l
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30803183 ~ 30896875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgatctgatttgcataagggaagatggaggggagggccttgtagccagCCATGCCAGGAGGGAGAGTAACAATGGTTGAGTTTTTGAAGCGCCACTGCTGAGCAGATCCGACTCGCGCAGATGATTTCGGACCACAATGATGCTGACTTTGAAGAGAAAGTCAAGCAGCTGATTGACATCACAGGCAAGGACCAGGATGAGTCCATGATTGCGCTGCACGACTGCAACGGAGATGTCAACAGAGCCATCAATGTGTTGCTGGAGGGTAGCCCAGATACTGACTCTTGGGAGATGGTGGGGAAGAAGAAAGGAGTGTCTGGTCAGAAGGAGCCTGGCCACGCCGagaccggagaggaaggaaaggataacagggagagaggagcagagagggacgTGGCACGTCGTAGAGGTGGGGCCCCACGCAGGGGCCGAGGGGCCAGCAGGGGACGAGAGTtcCGTGGACAGGAGAATGGTCTGGATGGCGGAAAGGCTGCTGGGATAGCTGGCAGGGGCACAGAGCGAGGCCAcagggggagaggcagaggaagaggGGAAGAGCGTGACCGAGGCAGGCGAGGGAGCAGGTTTTCAGCACAGGGCATGGGCCAGATTGATAAGGGGCCCAGATATGATTTTtcaggagaagagagAACATTCAACCCGGCAGACTACGCTGAGCCGACCCAGACAGAAGAGAGCTACGGCAGGGGAAGCACCTGGAACAACACGGGCAACCTGGAGCCAGAGGAAGGAGCCAGGATTGAGTACACAGCGGGAGGAGAGGGAACAAATTACCAACCCAAATTTGACTCTGTCCCTAGTGCCTGGAGGAGCGCAACAGAAGAGTGGGGTACTGAGGACTGGAATGAGGACCTGTCAGAGACCAAGATCTTCACAGCCTCCAGTGTGGCCTCCATGCCACTCCCCCGGGAGAATGTCACCATCACTGCAGGACAGCGGATtgacctggctgtgctgctggggaagactcccccatcctcctcagaGGCAGAGGCCCTGGGCCCCATGAAAGCCAGccagcccccctctctcccccagtcactgGTTTTCAGCAACTCCAAGCAGGGTGTGCCGCTGTCACAACCCCCCTCCAGCAGCACCCCTTACAACCAGCACAGCGTGGTGAGCATGCTAAGCAAGGGCTTCGGTGAAGTAGGGGACCCTAAAGGAGGCAGCACAGGGACGACCAGCGGCTCCCAGTTCTTGGAGCAGTTTAAGACTGCCCAGGCCTTGGCTCAGCTGGCTGCCCAGCACTCCCAAACAGGACAGCCTTCCCCCTCCTCCTGGGACACCAGCCCTGCAGCGCTGGGCCAGTATGACATGAACGCCCAGCCGGAGCCTGCGGCCCATAGCCCCTTCACAAAGCGCCAGCCCTACCAATCCACCTCCGTGTTGGATGCCTTCCTCCccccttctgtctcctcctccctgccccCACAGAGCACCCCCTCGTCCCTCATGGCGCCCCCCGTGTCCTCCCTCCCCAAAATGACGGTGCCCCCTGGGCAGCAGGTGTCCACTAGCTCGCCGGACGCCCAGGGCTCCAGCCCCCTGCCATTGCAGCAGCACAAGCTCAAGCAGCAGAAGAAGAGGACCTCCATCACCACCAAGATCCCAGCGACGCCGGTGGAGATGCCTGGCTCGGCAGACATCTCTGGGCTCAACCTGCAGTTTGGAGTGCTGCAGTTTGGCTCTGAACCCGTGCTCCAGGAGTACGACATCATCCCCGCCACCACCTCACCAGGCTGCCAGGTTCAGAACTGCCTCTACACAAGCCCCAGCAGTGAGGCAACTCCCTCCCTGTCCAACCCCAGTCAGATGGACATGTATGACCAGAGGGCTCCTCAGGCCCGACGCTACCCCACCGTCTCCTCCCCGCAGAAAGACATTGAGAATGGATTCAGTTCAGTACATACGCAATCTGTAGAAGTCTGCCCACCTGCAGGATCTGCAGTGTCTGTGAAGTCAGCCTCTGAATCGGCCGCACCCGCGTCAGTCTCCATGGCTACACTGACGGACAGTGGCTCAGGGCCCGCCTCTTTGTTGACCACATCAAAGCAATCGTCACTCAGCGCTCTGGGGCACAATGAAGACCTGCCCCCGAATACCATGTCTCAGCACAGCAATTCCCTTCCTACACAACAGAACAGTCTTGCTCTGTCACAAGTCTGCATATCCAACGCCAGTCTAATGCTCCAGAGCGTAGACAACTCCAGCTTgcactcctcctccttcccctctgtctcagCGGGGTCCTCTTCCTCGGTCCCCTCTTCCTTGTCGGTGACTGCAGCAGCTCAGCAGGTCTCCATGGGAGCCCCTCAGCCCTCTTCAGTGAACACAGTTTCTCAGTCGGTCCCCTCGGGCCTGGGCCCCGTCAGCAGCCTAGTAGCTATGGGCCTCCACACAGCAGCCAACATGGGACCTCCAGCCATAGCTTCTGCAGCCATGTCCACAGCAGCCCAAGCCCAGGCTATCGCTTCCTCCGCCTCCTCACGCAGCTCTGCAGTCTCCTCAGGTCTCTTTACAGGGAAAGCACCTCCAAACCTTCCGCCTGGAGTGCCTCCTCTGCTGCCCAACCCGTACATCATGGCCCCCGGGCTACTCCATGCTTACCCTCCTCAGGTGTATGGCTATGATGACCTACAGATGCTCCAGACAAGAATACCACTGGATTACTACAGCATCCCGTTTGCCACCCCCAACACAGCACTGACTGGCAGAGATGGCAGTTTGAGCAACAACCCGTACTCTGGTGACTTATCAAAGTTTGGTCGAGGTGACGCGTCGTCCCCGGCTCCGGCCACCACGTTGGCTCAGCAGACGCAGCAGAACCAGAGTCAGACGCACCACACCACGCAGCAGCCCTTTCTCAACCCCGCACTGCCTCCCGGCTACAGCTACACCAGCCTGCCCTACTACACAGGCGTGCCGGGCCTGCCCAACACATTTCAGTACGGCCCTGCCATGTTCCCGGTTGCTCCTACCTCGTCGAAGCAGCACGGCGTGAACGTTGGAGTCAACGCCTCGGCAACAGCCTTCCAGCAGGCCAGCGCCTACGGTTCCCATGGCTACAACACTGGCTATGAGGATATGGGCCAGGCTTCGGGGAGTGGGGATTTCTGTAAGGGTGGATATGGCACTGCCGTGGCTGCCGCCGCTTCTGCTCAAAGCAAGCAAGCCAGCTCTGTCAGCGGGCCTGGAGTCGGAGTCTCAGTCACGTCAAGCAACACAGGGGTCCCAGACATTTCAGGGTCTGTttacacaaagacacagcagCAGCAGTCTTTTGAGAAGCAGCAGGGTTTCCATGCAACCACACCTGCAACTTCCTTCAGCCTGCCCTCGGCCCTGGGCAGTGGTGGTCCCATCAACCCCCCAGCCGCGGCTGGTTACGCTCCGGCCCCCTTCATGCACATCCTGGCACCGCACCAGCAGCCCCTCTCTCAGATCCTGCACCACCATCTGCAGCAGGACGGACAGAGTGGCACTGGACAGCGCAGCCAGAATGCTTCACTTCAACAGAAAACACAGATCAACAAGTCTGCATACAACAGCTACAACTGGGGGGCCAACTAACACCTGGCCCCATGTGTCCCAAAGTCTGACACGCCGGCAGTACTCACCCCTGTCATGGGTGTTGCTGAGCTGAGAGGCAGTCTTGTAAGGGGGGGATGGAGTtaaatggttatagtaacagaccATTAAGAGCAGAGTATTGAGTGTCTGGAATTTGTATCGTGTCCAACCCCCCTCCCTTTCGCTCTGTTGTATGTAACATAGAGCTGTTTtctaataaaaatgttttttttttttttttttttactgatggGAGGAACAAAGAAAATGTTGAAGGCGGGAGACAGGCTGGTTTTCTattctcaccctctcccccttaTACTTGGGCGAAATGTAACCTTCCCACCATAAACCCAGACAGATGAACTTTTTCCTTTGTTTCCCATTGAATTTGTACAACATTTTAGTTTTAAGAATGGATTTTCTAAATTGGCAGAGGAATTGTGAAGTGTATTTTTTACcattatatatgtgtgtatgcacatgtgcggagtgtttgtgtgtacacTGGTGGGCCTTGGTTGTGTACCGGTCCTCTCGTTAGTCCCAAACGCAGTGAGTTACACACTCATACCATGTAAAATGATTTCCCATGTTTCCTATGTTGTAAAATAGCTTTACCCCTGAttaaaaatgtaacatttgtAGATTGTTGCTTATTCTGCAAGACAGCTGGAGTACAAAATGATGTCGTACTAGAGGCCAGGGGCACACCCTTACCTACTTATGTGTTGAAGTTAAGTTATttttctaaccccccccccccaatatattaGGAAAGCTGCAGCAATGATTACTGATGGACAAAATTCGACTATGGTTTTGTCTGATTTTCTTTTTGTACTGTGcgttaaaatatatttaaatggcTTAACTTGTcatgtacatatataaaaaaACAAGTACTGTAGTCCTTGTTTGTTCAATGGcttcccccctcccctttctcagAGATCCTCACTTGTTAGCTTTTttgtttcatgtttttttttattttgtaaaaaatatataaatattaagtAAATAAAACaggaaaaatacattttcatcaaTTTGGATGTGAAtgtcttattttattttttagaaacTTTATTTTTCTATCATGTGGCTTGTAAATACGCCAGTCTTTTTTCTTCAATTTAGTCAGCTAAACATAGTGGTGCCCAGTCTTGGTTGGGGCAGTCATTCTGCAAGTTTCCCTTTCTCATTTCTATATAAAACAATATTGATATCTTTTGGTTGAATACAGTGCCTCATTCAAAAGACCTGGATTGAAGGGAACCCTCAAGGACAGTCTAAATTTACCAGGATTGGACATCACTGCTCTGTAGTCATCCAAGGAAGTGGAGTGGGCAGGGCTGTGTTCTTACACAGTTGGTTTGGAGGACCAGCAGTATCAAATAAAACTCAACTCTGTGATTGTTTCTCTGTAGAACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759893 lncRNA downstream 16973 30784937 ~ 30786210 (-) True G1537617
TU1759907 lncRNA downstream 81510 30721403 ~ 30721673 (-) True G1537631
TU1759422 lncRNA downstream 98869 30703960 ~ 30704314 (-) True G1537194
TU1759400 lncRNA downstream 112302 30690294 ~ 30690881 (-) True G1537172
TU1759398 lncRNA downstream 113517 30688846 ~ 30689666 (-) True G1537170
TU1759974 lncRNA upstream 8814 30891768 ~ 30892048 (-) True G1537686
TU1759988 lncRNA upstream 22606 30905560 ~ 30905854 (-) True G1537700
TU1759984 lncRNA upstream 26457 30909411 ~ 30911711 (-) True G1537696
TU1760036 lncRNA upstream 139680 31022634 ~ 31023078 (-) True G1537743
TU1760037 lncRNA upstream 143679 31026633 ~ 31026865 (-) True G1537744
XM_021571576.2 mRNA downstream 597 30788111 ~ 30802586 (-) False LOC110495990
XM_021571577.2 mRNA downstream 597 30788111 ~ 30802586 (-) True LOC110495990
XM_036952481.1 mRNA downstream 128634 30661601 ~ 30674549 (-) True LOC110496794
XM_036951037.1 mRNA downstream 154071 30644510 ~ 30649112 (-) True LOC110496793
XM_021571553.2 mRNA downstream 165323 30620730 ~ 30637860 (-) True hcn3
XM_021571587.2 mRNA upstream 29627 30912581 ~ 30953359 (-) False LOC110495992
XM_021571581.2 mRNA upstream 29627 30912581 ~ 30953368 (-) False LOC110495992
XM_021571583.2 mRNA upstream 29627 30912581 ~ 30953368 (-) False LOC110495992
XM_021571585.2 mRNA upstream 29627 30912581 ~ 30953368 (-) False LOC110495992
XM_021571586.2 mRNA upstream 29627 30912581 ~ 30953368 (-) False LOC110495992
TU1759310 other downstream 199791 30602716 ~ 30603392 (-) True G1537091
TU1759222 other downstream 277810 30519892 ~ 30525373 (-) True G1537022
TU1758870 other downstream 518421 30284372 ~ 30284762 (-) True G1536703
TU1756202 other downstream 2450565 28351378 ~ 28352618 (-) True LOC110495963
TU1755852 other downstream 2766567 28034964 ~ 28036616 (-) False LOC110495955
TU1759986 other upstream 28873 30911827 ~ 30914295 (-) False LOC110495992
TU1759987 other upstream 31415 30914369 ~ 30953308 (-) True LOC110495992
TU1760029 other upstream 128924 31011878 ~ 31014176 (-) True LOC110495994
TU1760774 other upstream 633157 31516111 ~ 31523456 (-) True LOC110496004
TU1760868 other upstream 802798 31685752 ~ 31692671 (-) True LOC100136047

Expression Profile