RNA id: XM_021571593.2


Basic Information

Item Value
RNA id XM_021571593.2
length 5444
RNA type mRNA
GC content 0.51
exon number 20
gene id cgnb
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 30959174 ~ 31005856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCCGCGCCAATCGGCTTGTTTCGAGGGCGGGGTGATGTTATCTGACGTAGCCTACTGGCAAACAGGTTGCTTTAGCGGCGGCGGTGGTAGCAGAAGCCGGAGGAGTTTGTTCATGTCTGCAGTGTATTGTGAAACATATTCTGGGATACAACACGGCAAGTGAGCACACGCATCTCTTGATAATCGAAGGGTACTTTAGACGTCGCTTCTGATATCTCGCCTGGACCTTCCTCCATTCTAGCAGCCCAACCAGGAAGTCAAAATGGCCCTCTCCACAGACAGGAAGCCTCCACTTGACTACGGTGTCCAGATCCGCTTCATCAAGGACCTCCATGACACTGGCGGGGGCTACCCCGAGAAGACCAGAGGGGGCAGCGGCGCCATGCCCCCCTCCAACAAGTACGGGGTGGCTGTCCGGGTACAGGGCATCTCCGGCCAGCCCTACGTGGTGCTGAAGGATGGGGAGAAGGGAGACTCGTATGGGGTGCAGCTGAAGACCCAGCAGGCCCAGTCACAGAACCCCAACTCAGGCCTCTCCTCGCCCTACAACAGTCTGCCCCAGAGAAAGGAAGGGGGGGAGATCCAGAACCCTTACGCCCCTACTGGACAAACACTCAGCTTTCCGGTCTCTCCAAAGTCCACACCAGAGGGCGAGGGCAGGGAGGACTTTGGGAGTCCTTTCAAGAGACCTCCTGGGGATGGCCAGGctgggagccagagagagggtgagggtgggCCCCGGAGGGAAGGACAGATGAAGGTAAAGGTCAAGGAAGAACCCAGTCCCACAGCAGCAGAACCATACAGAGTGGATATGAAAGAGAGAGGTTGGGTCAATGGGGAGGAATTTAATGAGGCAGGGCTCAAACCGGTTAGTCCCAGAGGGGCCAGACAGAATGGGGTGGGGCTCGGTGGTTTGCTGGGCAGAAATGGACTTGATTCGTCCATCCCAGAACCCCTTCCTCCAGCGTCATTCAATGAGGCGATTGTTCCTGCCATCGACAAGACCTCCCTGGCGCCTATCAACAAGCTGATCAGCAAGTTCAACATTGGCACTCCTACTGGACAGAGTAGGGGGCGCTCCGGAACAAGGCTGCGGCTCAAGTTCGATGAACGCAGACGCTCCAGAAGTCTGGATGCCTGCAAAGACGTTCATCATGAGGTCTCCCCTCCTTCGCCAACTCCCAACACTACCTCCTtgctcttctcctccacctcctcatccacGTCATCCACACCTCCGTACAGTAGCCTAGGAATGAGCCCTGTCTCAGTTGCCAAGGTGACAGCCCTCCCTGGCCCCAAGCTGAGCTTTATAAAGTCACCTGGGAAGTTAGTCAAGGATACCCCTCCTGCCATCCCACCAAAGAAGACAGGTATGCCGGCCCCTCTGAGGAATGTAGAGGTCATCAGTGGAGAGGAACCACAAACCAAACAAGCTATCTACACCATCCTGAAAGAGGGGACCAGTGAGAGTGATTTATCCATCAAACGTAAAGGAAACCTAGTCTACGAGACGACCAGTGGTGCTAAGGTTCCTCCTAAACAAGGGTCTCATGAGAATCTGAAGAAGGAGTTGGAGCAGCGTCTGAATGAGAACCACCAGCTTCAGGAACAACTGGACCGCAACAAAACCGAACTACAGATGGCCCAAGAAGAGTTGACCCAGCTGCGGATGGCCAGAGAGGGGGCAGAGTCTCGGGTGCGTCAACAGGAAGACCAGCTGGCTGAGCTTCAGGAGGAGCTGAGGGGAATGCCAGAGAACACACCACAAACCGACTCCATGTCACTGCAGACGGATGTGATGTCGTTGCAGGCGGACCTGGCGGAGGCGGCAATGTTGCGCCAGCGTCAGGAGGAGGTACTGCGTCAGAGGGAGAGAGCGCTGACAGCCCTGAAGGGGGCACtgaaggaagaggtggggagccACGACCAGGAGATGGAGGCCCTCAGGGAGCAATACAGCCAGGACATGGAAACCCTGAGAAGCACCATGGAACAGGTGTCACAGTCCCAGCAGCAGattgaggaggagaggcagagggtgAATGATGCCATGCTCAGCCTGGAGGAGGAACTAGAGAGCTGCAGGGACCAGGGAGGCCAGTGGAGGAAGCAGCTGGAAACCACCACAGAGGAGCTTCACAGCACCAAGCAGGAGCTCATGAGAGCACGTTTGGAGAAGGAAGAGTTTGAGGGGGAGCTGAAGGAGCTTCAGGATTCATTGATGTCCATGAAGAAGCAGATGCCTGGCTTTGACGAGGCAGACTCTTATGCAGAGGATCTTCAGCGTTGTAATGATGATATTAAGCAGGCTCGCATGGAGGTCGACAGACAAAAGGTTGAGCTAAATGAGAAGGAGGCGGAGCTTCAAGCCTTGAGGAGGGCTAGCCAAGTAAGGGAGTCTGAATTGAGGTCAGAGAATGACCGACTGAAGGACCAATCACGGCAGGGGAAAGATGAGCTCGAGATGGCACTTGAGAAGGCAAAGCAGTCATCAGGTGGGTCCTCACCATTGGATCAGGGGAGTCTGGAGCTTCAGGAAGCCAACACaaggctgagagagagactgactctCATGACGAGGCTTCACTCCAGCGTGCCCCAGACCTCGGAGGCTGAGCAGGCACTGGAAGACGAGAACCGCTCCCTGAGGTCCCAACTGGAGGAAGCCAGGCGAGGAGCCTCCCGTCTGGGCAAGGACAGGGATGAGCTGGGCCAACGGCTGGAGGAGAGAGATCTGGAGAGAGATGCGCTGCGCAAGGGCAAGAGTGACCTGGAGGAGCAGAAGAGACTGTTAGACCGGGCCCTGGAGAAGATTAGCAAGGAGATGGAGGTGATGCTTGGGGACTCCCGTCAGTCGGTGCAGGCCCTGCAGAGCCAGATGGATGAATACAGGGAGCGCTCCAGGAGAGACCTACAGGATGCCCAGCGGCAGGGCAAAGACAGACTGGCTGAACTGCAGAGGGCCCAGGCCAACTTGAAGACACTGCAGGAAGAGGTTTCTCGTTTGAAGAAAGAGCTGCTGGtgtgtggggaggagagggacagcgcCCAGCTGGAGAGAGACCTGCTCAGCAGCCGCCTCAAACATCTGGAAAGCGAACTGGACTCTGAGAGGAGCTCTCAGACGGACCGCAACAGGGAACTCAGAGGCCTGGAGGACAAAGTGAAGACGATGGAAATTGAATTGGATGAGGAGAAGAGCAGCGTGGAGCTTCTCAATGATCGTGTTGCACGCAGTCGAGAACAGATTGACCAGCTGCGTGGAGACCTGATGAAGGAGCGCTCAACCGTACACGACCTGGAGATGGACAAGAGTGTCCTAGAGAGACAGGTGAAGGAGTTGAGGTCCCGTGTGGCAGACATGGAGACACAGTCCCGTCCCTCCACTGGAATGACTTTGTTAGAGGGTAAAGTgcaggagctggaggagaggctACACAGTGAAGAGAGAGAGAAGCTGAGTATCCAGGCCTcccagaggagagtagagagaaagcTTAAGGAAATAATCGTCACTCTGGACCAGGAGAGGAACCAGCACGCTGAGCAACGAGACCAGCTGTCCCTGCGTGTGAAGGCCCTGAAGCGTCAGCTGGACGAGAGCGAAGGCGAGGTGGAACGACTAGAGGGGGTCCGCAGGAAGGCTCTTAGGGACCTGGAGGAGCAGCAGGAGCTGCAGGAAGCACTGCAGGCCAAAGTCACATCACTGGAGTCTGAGAAGCGGAAGGTGTATCAGACGCGTCGACCTGTCCTGGGAGCCTCCAACCTCAGTTCTGAGGACGAGGATGGTTTTTACGACAACAGCATCGCCTCCATCCTCACTGAGGGACAATTACATACCACCAATTGCTAGGgagagatttttttatatattaaaTTAATAGATTGAAATATAGCTGGTTAGAGGGAGGTACTCAGGACTctacatgaagtagctaacaTGCCAAGCACTACGAAATTGACTTGCAGTTATTTTTCTGGTTTTATGAGAACTAGATTGCTGTGTCAGAGGTTGGTTGCCAGTACAATCAACTGTCATCCTGGCACCATaattttcttattttcttttgTCAGTTAAAATCTGAGATATTTTGTAGATTGACTAAGCCAAGGGCCCAAaaaactctggtcaaaagtagtgcactgtatagggaatagggtgccatttgggacacacacatgAACTTGGAATCACAGGGTTTTGCTGTGCCTCAACTTGACTTTGATGTTTTATAAGAATACTTGCTTGAATGTTTTACAGCACCTTTACACTGACTTGTGGTGGGATATTAACACAGCAGAAAAAGTTTCAATGCAGTACGTAGTTTAAATTCTTGGCAAGCCTTTTCACATGCACATGCGTGTTCACACGCAATCTCTCTTCTGAtactttttaaaattgtatttaactaggaagtccgttaagaacaaagtcttatttacaatgacggcctaccaaatggcaaaaggcctcctgcggagtcgggggctgggattaaaaataaaataaaaaatctaggACAAAACACGCATGAATAGAGAGACAACACAGAGCGACCAAAGATACATGCTACTCTCAAACCAAAAGGTGGCAAACATATTGGTCACTTATGACAGTTGAGTTATTTTCAGTACAATGTTGTTGTATTTACATGGGCATGTTAAGCTGTACTTTATTGTACAGTGGCTTCAAGTGGTCGATGCAGGTGCTCACATTCACCTTCCTTTGGTTTTGGTATTCTTTGTGGTTATTTTGACTTTTGACTGTACTGTGAGGGCTATGTACTTTTCTGGGGCTTACACTTTCCTACTCTTCCTGCTGTATACATCAGATATTTATGACAATCCGCTACATGCACAATGGTTTGAATCGTGGGTGAATTCCACTCCATCTCTATTCTTTCCATTACCTCTCACCCTTCTTAATAGCCTTTCTCTATCCTGTTCCTTATTTTATGTTTCAAGTATTTATCTCGCTGGTCTGTGCAAATGTTTTCACTCGAATGCCTTAAAATTATTTCTGTAATTGTAGTGGTTATTTATTAATACTGATGCTGTAGTTGCTACTATTGTCGTGTGTACCGTTTGTATGTTTCCTTCAGATGCAGCTACAAGTTATTTCAAGAGTAACTTGTCAGTGCTTGAATCTGCTTTCCTACCAACAGAGTAATCATATGATTGGAAGTGCAATAGTACATTTCTTCTCATTATGCCTGCCTTTTTAGTGAATGTACAATGAACTTTTCTCCCTTAAGTACATTTGCTGAGATTTTTACTTTGAATGTGGTAGTTTTCAGATGTCTTTCTGGGGCAACTTTGCCAAGGTTATGAAGTTTTTACTGTTTATTGTAACATTTGATGTGGTAGAAATCTGCTTGAGTTTTACCAGTATTTTGACACTTTGGTATTTCAAATAAATGTTGGACTTTGTGTGGA

Function

GO: NA

KEGG:

id description
K06102 CGN; cingulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759984 lncRNA downstream 47463 30909411 ~ 30911711 (-) True G1537696
TU1759988 lncRNA downstream 53320 30905560 ~ 30905854 (-) True G1537700
TU1759974 lncRNA downstream 67126 30891768 ~ 30892048 (-) True G1537686
TU1759893 lncRNA downstream 172964 30784937 ~ 30786210 (-) True G1537617
TU1759907 lncRNA downstream 237501 30721403 ~ 30721673 (-) True G1537631
TU1760036 lncRNA upstream 16778 31022634 ~ 31023078 (-) True G1537743
TU1760037 lncRNA upstream 20777 31026633 ~ 31026865 (-) True G1537744
TU1760038 lncRNA upstream 22517 31028373 ~ 31028628 (-) False G1537745
TU1760040 lncRNA upstream 23048 31028904 ~ 31029152 (-) True G1537745
TU1760043 lncRNA upstream 24938 31030794 ~ 31031210 (-) True G1537747
XM_021571582.2 mRNA downstream 3975 30912581 ~ 30955199 (-) False LOC110495992
XM_021571581.2 mRNA downstream 5806 30912581 ~ 30953368 (-) False LOC110495992
XM_021571594.2 mRNA upstream 2900 31008756 ~ 31014201 (-) False LOC110495994
XM_021571595.2 mRNA upstream 2900 31008756 ~ 31014201 (-) False LOC110495994
XM_021572935.2 mRNA upstream 42734 31048590 ~ 31051663 (-) True LOC110496925
XM_021571598.2 mRNA upstream 53165 31059021 ~ 31075756 (-) True LOC110495997
LOC110495999 mRNA upstream 71320 31077176 ~ 31085443 (-) True LOC110495999
TU1759987 other downstream 5866 30914369 ~ 30953308 (-) True LOC110495992
TU1759986 other downstream 44879 30911827 ~ 30914295 (-) False LOC110495992
TU1759310 other downstream 355782 30602716 ~ 30603392 (-) True G1537091
TU1759222 other downstream 433801 30519892 ~ 30525373 (-) True G1537022
TU1758870 other downstream 674412 30284372 ~ 30284762 (-) True G1536703
TU1760029 other upstream 6022 31011878 ~ 31014176 (-) True LOC110495994
TU1760774 other upstream 510255 31516111 ~ 31523456 (-) True LOC110496004
TU1760868 other upstream 679896 31685752 ~ 31692671 (-) True LOC100136047
TU1760970 other upstream 708650 31714506 ~ 31715181 (-) True G1538595
TU1761118 other upstream 1051455 32057311 ~ 32058785 (-) True atp5if1a

Expression Profile