RNA id: XM_021571596.2


Basic Information

Item Value
RNA id XM_021571596.2
length 4218
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110495995
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31016526 ~ 31033736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacttttggccacagTCAGTGGGCTACATTGTAAGAATAGACAGCCACAAGATTTGACACTCTGGGAATGGGATCACTAATAAGAACCAAGAAAAACTTTCAATTCTTTCGAGTTTTCCCACTCCAAAGACTTCTCTTCATCCAAAGGGAATAACTCTACATGCAGCTAAATGGAAGAGGGATACGACCTGACTTAAAGAAAATCACAAATGGGATAAAAGTAGGAAGAAATCTTCCAATATAGGCTACAGCAGGTTTTTATTTTGTTATAAGCTATCACATGTAggatatttgttatttatttaattttggtTTAATCTAGTGGCCTTTATTAGAAAACGAAATTGAACATGCCTATTAAGTTAGCCTAATCAATGTTTCATCGGATTATCAAATGAAAAGAATCATATTCTATTTAATTTGGAATTTCTTATAGCCCAGAATTAGACAATTTGACTATTAAAACAATATACGCTATTTTTTTCTCAAAGTAAAAGATAAGCCAGTTAGGACTTTGGACTACATGCAGAACATCTCAAAAAACAGCCTTGTGTTGAAGCAACGCAAGTCTTTTGTGTCAGAATAGCCTACTCTGATTTCTAAAGGTGCGTCTTTGGGGCTGGCACAGTGCATGGCGCATAAAGGTGTTGGACCAAAGAGAGTATTAGCTTTATACAGAGACCATGGCAAAGTGGTTCAAAGAATTCCCCATCAATTTGAAGAATGGTACTGATAGGATCCGCTCAGCTTCAGAATCAGGTTCCCAATCCAGGGGTAAACTTGGACTGGTAGCTGGCATTGGCACCAAAGTAACCAGCTCCAAAGTGAGTTCGAGCAAAAACTCGGGAACGGATAGTAGTGTTGGTGGTGGAGCTGTTGGTGCTCTACCGTCTGGAAGAAATAGAAAAAATTCTGCCGAACTGGGAAGGAATGGCACACGTTCGATAAAGGATGGAAAAGTTTGGGATAGCCTTATAGGTAAAAGTCGCAAAAATTCCAAAGCAGAGACGCCAGTGTTTGATGAGCACCAGCCACTGAAAAGTTCCAGATCTGCGAATGCCTACATCAGTCGTCTGATTAAAGTCGATAAGAAGGACAAGAGCCCAAACTTCAACAGCAGCCCAGTGGTACTCGATACAGAGAAATCACAGCCACTGTGCAAAACAGAGACGGTGATCATTCAGGACTATGCAGATCCCTTTGACGCCCACAAGACTCGGGAGCAGAGGgatgcggagagagagggggagaatgatgGATACATGGAGCCTTACGATGCGCAGCAGATGATCACAGAGATCAGACGGAGGGGTTCCAAGGACATGCTGAAGATGTGTGTCCTGCTGGAGGGGGttgagggggaggtggaggaggggcgaCCCGTGCCTCCCCAGATCTACGACATGACCTATGAGGGAGGTGTGGAGGGTGACGGAGGGAGCGTGAAGACCCCGGTCACCAGGCCAGAGTTAGATCCCCGGCTCCCTGCTGAGTACCAGCTGCCCTGGGAGTGGAAGAAGGAACAGATTGTCAAGGCTCTGCCTGCCCAGTTTAACTGCCCTGAGCTCCCCACCCCAACCAAAGAGGACCCCCCCGCACTCACCCTCACACGGCAGCCCCAGCAGCAGCCCCTGCAGCAGccccaacagcagcagcagcatctgcGACAAAAGAGTTGGAGCCAGAAGATCCTGAAGTCCTCTCCTACTTTCTTGCCCTCCCTCTCGTGCCCGCCCAGTATCAGCCCTGAGGCTGAGGTGTGCCGGGTGGACCCCACCCTGCCCCTGGAGAAacagagCTGGTACCATGGCTGTGTAACACGCCAGGAGGCAGAGTCTCAGCTCCAGTCCTGCAAAGAGGCCAGTTTCCTGGTGAGGAACAGTGAATCAGGAACCAGCAAATACTCCATTGCGTTAAAgacaAGCCAAGGCTGTGTTCACATCATTGTTGCCCAGACAAAGGAGAATGGCTACACGCTGGACCAGAGTAGCTGTGTGTTTCCCAGCATTCCAGAGGTGGTGCACCACTACAGCACTCAGCGGCTGCCTTTCAATGGGGCCGAGCACATGACCCTGCTGTACCCCGTGCCACGCCCTTACTGACTCCACCCCCACCACACTCAGGTGCACCCCAACAACCCCATGCCTCTGCTTCTGCATGAAATCATCCTCAACGAACATATCCAATCTAATGCTGGCCCCCAACAGCCTCAATCTCTTTATCTATTATCATTCACTTTTCAGTCCCTCTCTCTTTAATGTTATTTAATCCatatcaaaatgttttttttcagtCTTATTTTCTCCTGGATAAACAGAAGACAGCAAGCTCAGAGACCTGGGTATTGCTCTTGCTGTACAATAATTCTCTCACCTTTCATATGCAGCTAATGCAAAACACCCAGGCTTCTGTTTTGCATGTGAATTTGGGAGAAACTCAACCCACGCCTTGATTGTACAAACGGGGCAGAAATGAATGATCAAATGAGTCAGAGCCCTGCCAGTTAGAATTTAGTCTCAATTCAAAGATGTGTAGAGAATACAGTATCATTAATCATAATTTTGGTTTAAGATGGTTTAAGCTGCAAAGGGATAAAGCTAGTGCTTTGTTCGAAGAAAATCAGTAAAGTGACTCTCTCACCCTCTGGTGGATGTGCTGGCTCACTGCACCAACTGTACACAACCCTGTGGAGaacaacaactactgtacccGACAAAGACTACTATAGGGAAAgagtgatacctagtcagttgtacaactgaatgcattcaactgaaatgtgtcttctgtatttaacccaacccctctgaatcaaagaggtgctgggggctgccttaatcaacatccacatcatcggtacccggggaacagtgggttaactgccttgctcgggggcaaaacgacagatttttaccttgtcagctcggggattcgatccagcaacatttcggttactggcccaacgctataCAACACTGTACAAAGACTACTTCACATCTACGCTCACAGCAAACATTTAAGTTGTGTTCTTAGCCTTCTTTTTTTATATAAAGGAGAGATATCCTCCCATCACCCAATTTTCGTCATCAGTGAACAGTGACAGTTGTGTGACTATCTGTACCACCTGCACTGTGAACCATTGAGTGAATCACCCTAATGTAATGTGCCATGTGTTAGGCTAGCGTCACCCTATGGGATTGAATATCCCTTGATAATTACATTAAACCACAGGCTCCTAATCCTGGTCTTCAAGTACCCACATGTATGCTGGCTTTCACCTCATATGATCTCTGCGTCATTAATAGAATTGTTGATTGAGCACTCTCATATGACTGGTTCGATTGTTGTGGTCTGTCACTGTAAATCCAAGACCATGGCCAATTTGCCTAAAGTGAGTGACTGTAAAACTGAGCATCAACAACTAGTTAAGATGTTGTTGGAAAGCTGATGGAGTTGTTCTATGTGTTAACTACTGACTGACACAAACCAAGAAACAAAATACTTGATTTAGATGCACAGCGCTATGGAATATGACTGAAAATGTGTCAACAGACCCCATGTTAATTTCCAATGTAAATTGGTGAGATATTTGGTGGGAAAAAAATCTTTCCCTGTTTCTTACCTTCCCTGTCACATTGCACCACCTGGTGCTAACAAATAAAAAGTGGCAATGCATGATTGCTTTGATTTGATACTACGTTATCTCGCTCACCTGCTGGCTCTCTCTTCAATTCGAGCCTGGGGACGAGGTTAGATACCATTTAACCCTAGATAATGACTTGTGTGTACTCGTTATGAAAAGATATGCTGATACCATTGTCAAACCTACTTTGTCTTTTGGTGTGTATGTAGATACCTGCTATTGAAACAAGAATGagttactgatgttactgattGAAATAAAATGTCCTTAGATAGTCCATGGTTGTTTACCTATATCCTGTGGACATTTGTAGTCTCTCTTTTATTATTATTCAAGTGGAGCATACACGTAGGAATCTCGAATGATTATTATACACTTGGTTAAGTAGCCAATGTCTAGTTGCTATTATTGACAGCTCTGATCGACATGTTCAATTGACATGGCTGATGTAACGTTCCCCTGTGGGGTGAAATAGGTTCCTCCCAACTTTTTCTACTCAAGGCTCTGATGAAGGCGAACTCCACCGAAACTTACACCTGTTTGTTTGTCCAGTTAATAAATCAATCAGATCTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759561 lncRNA upstream 50778 30955106 ~ 30965748 (+) True G1537314
TU1759516 lncRNA upstream 159881 30855049 ~ 30856645 (+) True G1537273
TU1759466 lncRNA upstream 253191 30763055 ~ 30763335 (+) True G1537226
TU1759456 lncRNA upstream 273274 30742711 ~ 30743252 (+) True G1537216
TU1759436 lncRNA upstream 296358 30719926 ~ 30720168 (+) True G1537208
TU1759649 lncRNA downstream 10597 31044333 ~ 31044561 (+) True G1537379
TU1759650 lncRNA downstream 10989 31044725 ~ 31045155 (+) True G1537380
TU1759652 lncRNA downstream 14894 31048630 ~ 31049824 (+) True G1537382
TU1759653 lncRNA downstream 16189 31049925 ~ 31050225 (+) True G1537383
TU1759604 lncRNA downstream 20315 31054051 ~ 31055891 (+) True G1537350
XM_021571579.2 mRNA upstream 108002 30904024 ~ 30908524 (+) False LOC110495991
XM_021571580.2 mRNA upstream 108002 30904063 ~ 30908524 (+) True LOC110495991
XM_021571558.2 mRNA upstream 239668 30767138 ~ 30776858 (+) False znf687b
XM_021571561.2 mRNA upstream 239668 30767138 ~ 30776858 (+) False znf687b
XM_021571559.2 mRNA upstream 239668 30767320 ~ 30776858 (+) True znf687b
XM_036952488.1 mRNA downstream 83178 31116914 ~ 31126108 (+) False LOC110496000
XM_021571603.2 mRNA downstream 83184 31116920 ~ 31126108 (+) False LOC110496000
XM_021571604.2 mRNA downstream 83195 31116931 ~ 31126108 (+) False LOC110496000
XM_036952489.1 mRNA downstream 83195 31116931 ~ 31126108 (+) False LOC110496000
XM_021571602.2 mRNA downstream 83211 31116947 ~ 31126108 (+) False LOC110496000
TU1759494 other upstream 188480 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 719180 30297131 ~ 30297346 (+) True G1536720
TU1756577 other upstream 2203423 28812829 ~ 28813103 (+) True G1534495
TU1756570 other upstream 2211853 28804028 ~ 28804673 (+) True G1534488
TU1756512 other upstream 2281535 28732775 ~ 28734991 (+) True LOC110495972
TU1760344 other downstream 535155 31568891 ~ 31572239 (+) True LOC110496006
TU1760346 other downstream 544431 31578167 ~ 31580320 (+) True LOC110496008
TU1760548 other downstream 719974 31753710 ~ 31754191 (+) True G1538208
TU1762072 other downstream 1986492 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 2025254 33058990 ~ 33059857 (+) True G1539671

Expression Profile