RNA id: TU1759629


Basic Information

Item Value
RNA id TU1759629
length 1579
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110495995
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31016526 ~ 31033736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATCAGTAAAGTGACTCTCTCACCCTCTGGTGGATGTGCTGGCTCACTGCACCAACTGTACACAACCCTGTGGAGaacaacaactactgtacccGACAAAGACTACTATAGGGAAAgagtgatacctagtcagttgtacaactgaatgcattcaactgaaatgtgtcttctgtatttaacccaacccctctgaatcaaagaggtgctgggggctgccttaatcaacatccacatcatcggtacccggggaacagtgggttaactgccttgctcgggggcaaaacgacagatttttaccttgtcagctcggggattcgatccagcaacatttcggttactggcccaacgctataCAACACTGTACAAAGACTACTTCACATCTACGCTCACAGCAAACATTTAAGTTGTGTTCTTAGCCTTCTTTTTTTATATAAAGGAGAGATATCCTCCCATCACCCAATTTTCGTCATCAGTGAACAGTGACAGTTGTGTGACTATCTGTACCACCTGCACTGTGAACCATTGAGTGAATCACCCTAATGTAATGTGCCATGTGTTAGGCTAGCGTCACCCTATGGGATTGAATATCCCTTGATAATTACATTAAACCACAGGCTCCTAATCCTGGTCTTCAAGTACCCACATGTATGCTGGCTTTCACCTCATATGATCTCTGCGTCATTAATAGAATTGTTGATTGAGCACTCTCATATGACTGGTTCGATTGTTGTGGTCTGTCACTGTAAATCCAAGACCATGGCCAATTTGCCTAAAGTGAGTGACTGTAAAACTGAGCATCAACAACTAGTTAAGATGTTGTTGGAAAGCTGATGGAGTTGTTCTATGTGTTAACTACTGACTGACACAAACCAAGAAACAAAATACTTGATTTAGATGCACAGCGCTATGGAATATGACTGAAAATGTGTCAACAGACCCCATGTTAATTTCCAATGTAAATTGGTGAGATATTTGGTGGGAAAAAAATCTTTCCCTGTTTCTTACCTTCCCTGTCACATTGCACCACCTGGTGCTAACAAATAAAAAGTGGCAATGCATGATTGCTTTGATTTGATACTACGTTATCTCGCTCACCTGCTGGCTCTCTCTTCAATTCGAGCCTGGGGACGAGGTTAGATACCATTTAACCCTAGATAATGACTTGTGTGTACTCGTTATGAAAAGATATGCTGATACCATTGTCAAACCTACTTTGTCTTTTGGTGTGTATGTAGATACCTGCTATTGAAACAAGAATGagttactgatgttactgattGAAATAAAATGTCCTTAGATAGTCCATGGTTGTTTACCTATATCCTGTGGACATTTGTAGTCTCTCTTTTATTATTATTCAAGTGGAGCATACACGTAGGAATCTCGAATGATTATTATACACTTGGTTAAGTAGCCAATGTCTAGTTGCTATTATTGACAGCTCTGATCGACATGTTCAATTGACATGGCTGATGTAACGTTCCCCTGTGGGGTGAAATAGGTTCCTCCCAACTTTTTCTACTCAAGGCTCTGATGAAGGCGAACTCCACCGAAACTTACACCTGTTTGTTTGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759638 lncRNA upstream 1462 31030455 ~ 31030672 (+) True G1537368
TU1759637 lncRNA upstream 2193 31029734 ~ 31029941 (+) True G1537367
TU1759636 lncRNA upstream 2451 31029478 ~ 31029683 (+) True G1537366
TU1759634 lncRNA upstream 5924 31026008 ~ 31026210 (+) True G1537364
TU1759561 lncRNA upstream 66386 30955106 ~ 30965748 (+) True G1537314
TU1759649 lncRNA downstream 10621 31044333 ~ 31044561 (+) True G1537379
TU1759650 lncRNA downstream 11013 31044725 ~ 31045155 (+) True G1537380
TU1759652 lncRNA downstream 14918 31048630 ~ 31049824 (+) True G1537382
TU1759653 lncRNA downstream 16213 31049925 ~ 31050225 (+) True G1537383
TU1759604 lncRNA downstream 20339 31054051 ~ 31055891 (+) True G1537350
XM_021571579.2 mRNA upstream 123610 30904024 ~ 30908524 (+) False LOC110495991
XM_021571580.2 mRNA upstream 123610 30904063 ~ 30908524 (+) True LOC110495991
XM_021571558.2 mRNA upstream 255276 30767138 ~ 30776858 (+) False znf687b
XM_036952488.1 mRNA downstream 83202 31116914 ~ 31126108 (+) False LOC110496000
XM_021571603.2 mRNA downstream 83208 31116920 ~ 31126108 (+) False LOC110496000
XM_021571604.2 mRNA downstream 83219 31116931 ~ 31126108 (+) False LOC110496000
XM_036952489.1 mRNA downstream 83219 31116931 ~ 31126108 (+) False LOC110496000
XM_021571602.2 mRNA downstream 83235 31116947 ~ 31126108 (+) False LOC110496000
TU1759494 other upstream 204088 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 734788 30297131 ~ 30297346 (+) True G1536720
TU1756577 other upstream 2219031 28812829 ~ 28813103 (+) True G1534495
TU1756570 other upstream 2227461 28804028 ~ 28804673 (+) True G1534488
TU1756512 other upstream 2297143 28732775 ~ 28734991 (+) True LOC110495972
TU1760344 other downstream 535179 31568891 ~ 31572239 (+) True LOC110496006
TU1760346 other downstream 544455 31578167 ~ 31580320 (+) True LOC110496008
TU1760548 other downstream 719998 31753710 ~ 31754191 (+) True G1538208
TU1762072 other downstream 1986516 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 2025278 33058990 ~ 33059857 (+) True G1539671

Expression Profile