RNA id: XM_021571602.2


Basic Information

Item Value
RNA id XM_021571602.2
length 1601
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110496000
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31116914 ~ 31126108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggtccatttaaaaatcattccttcctccctcgccctacaagtgtatactcgtcagacgCCATCAGaggtgtccacttaatttgaggggaTAGGTTGTGTCTTAAGTGTTTGGACTGCAATCAATGCAGCGTTCACGTCGTACGAGGTAGACGGAGAACTGCAAACCGGATGTCATTGTTTTCAATGAGAGCGGACGGTATGACGGACTTCGCGTGTCTCGTCTAAACTCAGCATATCACATGATCATTTATGTGAGAGGATAGACCAATGAGGAGCAGCAGTGAGTTTTTGAAAGGTGATCAGTAACATAAGAGAGGGAAACTCGCAGCGAAATGTGAAAAAGGTCCATCGACCACATCAGAAGCAGTACAAGCTACTTACTATACATGGAAATATAAATACATCCGTGACCGACAATATTTTAGAAAAGACAGGCCTGTAGATTTTCCGTCACCAAATCACGAATTCAATCATTTGGAACGAGCCACCTGAAGGTTGGCATCATGTCTCAGAAGCAGATATATTACTCTGACAAATATGACGATGAGAAATTTGAGTATAGACACGTGATGCTGCCCAAGGACATTGCCAAGCGTGTGCCCAAGACCCATCTGATGTCAGAGACTGAGTGGAGGAACCTGGGCGTCCAGCAGAGTCAAGGCTGGATACACTACATGATCCATCAACCAGAGCCCCACATCTTGCTTTTCCGTCGTCCTCTGCCTGCAGCCTGATCTCAGACAGAGTGCACGAGAGAACACTCATAGGGAAGAAGATAAGAGTGGCTGGAGATGGATGAACACTTCAGTTGGATGGATACTATACTAAAATACTATTTTCCACATGTGTATCGTATACATTGCAGTGGAGCCAGAGTCAAGAGCTCCAACCCACCGTCCTCACTCATTGTAAAGCCTTTCACATTTCCTATGGACCTGCTTGGAACCCTTTCATCATtttctctatctgtatttctGTAATCATTCAAACTTTAGTCCTAATACAAACTTGATAATGTTGTCAGGGTGTATGTCTGGGAAGAAAAATAAAAGCTGTGGTTGTGGCAACACTTGAATTATTCTAGACCTTACCTGCTGTGCGTTGACTAACATGATCCTAATATCTATTTTAAGCTATATAGTAACTGTAAAATGTAAGGGGGACATTTTTGAAAGTGCACATTTTACCAAAATGACTATGATCAAATACCTGTTATGGCACTTGATTCATCTTGTTTTGAATACTGTAGATTGTATCAAGTGTATGCACACCTACTCTGTACAAATGATGATAGTACTCtggacatgttttttttatttgatcaatTGTGACCTGCAATTATAAGTAACGCTGTTGACTGTCTGCATTTTAGAGCTGTCAAAATGGGGCCCAAGATCTTTGTTGACATGTCTATTATTGTACAAATCAGCTGCTCAGTATTTATGAATACTTGTACCCcggaaataaatgttttttaattTGTCATTCTCACAGATTATGATGTGGTTGTGAATtataattacatttttatatgTATGTATATCCTTAAAGTGGCACTAATggtactgtccccactacaataAATacatacttaaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759672 lncRNA upstream 38285 31078336 ~ 31078662 (+) True G1537402
TU1759671 lncRNA upstream 38708 31077995 ~ 31078239 (+) True G1537401
TU1759670 lncRNA upstream 39438 31077135 ~ 31077509 (+) True G1537400
TU1759604 lncRNA upstream 61056 31054051 ~ 31055891 (+) True G1537350
TU1759653 lncRNA upstream 66722 31049925 ~ 31050225 (+) True G1537383
TU1759860 lncRNA downstream 247313 31373421 ~ 31373638 (+) True G1537587
TU1759862 lncRNA downstream 249735 31375843 ~ 31376096 (+) True G1537589
TU1759863 lncRNA downstream 250182 31376290 ~ 31376547 (+) True G1537590
TU1759875 lncRNA downstream 262086 31388194 ~ 31388423 (+) True G1537602
TU1760285 lncRNA downstream 286831 31412939 ~ 31413242 (+) True G1537979
XM_021571596.2 mRNA upstream 83211 31016526 ~ 31033736 (+) False LOC110495995
XM_021571579.2 mRNA upstream 208423 30904024 ~ 30908524 (+) False LOC110495991
XM_021571580.2 mRNA upstream 208423 30904063 ~ 30908524 (+) True LOC110495991
XM_021571561.2 mRNA upstream 340089 30767138 ~ 30776858 (+) False znf687b
XM_021571605.2 mRNA downstream 17017 31143125 ~ 31159895 (+) True LOC110496001
XM_036952490.1 mRNA downstream 128078 31254186 ~ 31358812 (+) True LOC110496002
XM_021571608.2 mRNA downstream 304197 31430305 ~ 31443574 (+) True LOC110496003
XM_021571618.2 mRNA downstream 442518 31568626 ~ 31571449 (+) False LOC110496006
XM_021571619.2 mRNA downstream 451988 31578096 ~ 31580319 (+) False LOC110496008
TU1759494 other upstream 288901 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 819601 30297131 ~ 30297346 (+) True G1536720
TU1756577 other upstream 2303844 28812829 ~ 28813103 (+) True G1534495
TU1756570 other upstream 2312274 28804028 ~ 28804673 (+) True G1534488
TU1756512 other upstream 2381956 28732775 ~ 28734991 (+) True LOC110495972
TU1760344 other downstream 442783 31568891 ~ 31572239 (+) True LOC110496006
TU1760346 other downstream 452059 31578167 ~ 31580320 (+) True LOC110496008
TU1760548 other downstream 627602 31753710 ~ 31754191 (+) True G1538208
TU1762072 other downstream 1894120 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 1932882 33058990 ~ 33059857 (+) True G1539671

Expression Profile