RNA id: XM_021571625.2


Basic Information

Item Value
RNA id XM_021571625.2
length 1428
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC100136047
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31684840 ~ 31692733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACTCACTTCCTGCCCGTGCACCAAAGTAGCGTCAATAGAAACCCCTTGTTTCCGATCATGCCTTCTTTCAGGCAACGGCTATTTCTTCGCAAACATGCCACTCGCAAAAGACTTGTTGCACCCATCccctgaggaggagaagaggagccaCAAGAAGAAGCGTCTTGTCCAGAGCCCAAACTCCTACTTCATGGATGTTAAGTGCCCAGGATGCTACAAGATCACAACGGTGTTCAGCCACGCCCAGACGGTTGTGCTGTGTGTGGGTTGCTCCACAGTTCTGTGTCAGCCCACTGGAGGCAAAGCACGTCTCACAGAGGGGTGCTCATTCAGGAGGAAGCAGCATTAGTTGTACTTCTGATGCCCCGGTAAAAATGTAAGAGGAGGGGTTGGACATGTTGATTTCAGCGACTCCAGCCTCGATACAGCACCCAAGAAAGATTGATCCAGAAGTGCTCATGACGCCTGGACACCAGAAGGGATTACTCATTCAATGTGATAGTCCACTTTGTTTTTAGTAACTGAACTCTTCAACCCAATCTTTTTTAATACAATTGTTTTGGCTAAAGAATGGGTGGTTTGTACTTTTTTGTTTCCTTTTCAATATTTGCCTAAATTGGGATTGAAATGTTTTTATCTACATCAGTTGGGTAATTCACATGAAACCAGTTTATTTTTATACATGTCTGTAGCAAATTGTGTTACAAAACCATGTGTTTGCAAAAATCAACTATGATTATGAGGACTACGGTCAACATTTTTGGCCAAGTGTCTTATTTTAAATTGTACGTTCTCACCTGAATTTTGTACATTTTCAGTTTTCATTACCTTTTTTGGATTAACTTCGAGTCATTTAATACCATTTTACTTTAGAAAAACATAATTTCTTTGAATAAAACTGCTGTAGTTTGTCCATAAATAACAAAACGATAAACTAGTATAAGTATACATTaaacaatgtctgtcaacatgcATCTCACTTTGGAGTTTTTACAGGAAGTTTAAAATCAGTTAAGTGTTTAAACACATATGATGCATGATCAAGAGGAGTAGTCCTTAGATGAGCACAAGTACATGTATTTGCTTGTACGCCTTCAGAATGAGGTTCTTATTTTCAAACAACCCCTTTAACCAACTTGGCCTTCTCAATACTGAAACGGCAAGAAAAGCTCCAATTAGGAAAGAGTGATGTGAATTTTATTGTGTAATTTAAATTTCGATATTTGTATTTTCAGTTTAATTCTGGTCTTTTCACAGGGGGAACAATGTTCTATCGGAAATGGATTTGTTTACTTTTATTGGACAAACTGTTGCGGTAATTAGAAAGTTGTGGAAATTGTCAACTGCATAATCTGATAAAGGAAATGGGCAAGTACAGATCCTAATCTCAGTGATCTATGACAATTTTGTGAAATTACACTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1760936 lncRNA downstream 26252 31657999 ~ 31658588 (-) True G1538561
TU1760932 lncRNA downstream 36263 31648271 ~ 31648577 (-) True G1538557
TU1760925 lncRNA downstream 41638 31643002 ~ 31643202 (-) True G1538550
TU1760923 lncRNA downstream 45039 31639557 ~ 31639801 (-) True G1538548
TU1760917 lncRNA downstream 48777 31634625 ~ 31636063 (-) True LOC110496009
TU1760971 lncRNA upstream 22766 31715499 ~ 31715738 (-) True G1538596
TU1760872 lncRNA upstream 29782 31722515 ~ 31723929 (-) True ash1l
TU1760977 lncRNA upstream 48749 31741482 ~ 31741850 (-) True G1538602
TU1760873 lncRNA upstream 77493 31770226 ~ 31771332 (-) True G1538500
TU1760986 lncRNA upstream 83910 31776643 ~ 31875585 (-) True G1538610
XM_036952494.1 mRNA downstream 30604 31628863 ~ 31654236 (-) False LOC110496009
XM_021571620.2 mRNA downstream 30642 31628863 ~ 31654198 (-) False LOC110496009
XM_036952495.1 mRNA downstream 32451 31628863 ~ 31652389 (-) False LOC110496009
XM_036952492.1 mRNA downstream 149464 31530404 ~ 31535376 (-) True LOC110496005
XM_021571615.2 mRNA downstream 149867 31530404 ~ 31534973 (-) False LOC110496005
XM_036952505.1 mRNA upstream 29781 31722514 ~ 31769104 (-) False ash1l
XM_036952498.1 mRNA upstream 29781 31722514 ~ 31769105 (-) False ash1l
XM_036952499.1 mRNA upstream 29781 31722514 ~ 31769105 (-) False ash1l
XM_036952502.1 mRNA upstream 29781 31722514 ~ 31769105 (-) False ash1l
XM_036952504.1 mRNA upstream 29781 31722514 ~ 31769105 (-) False ash1l
TU1760774 other downstream 161384 31516111 ~ 31523456 (-) True LOC110496004
TU1760029 other downstream 670664 31011878 ~ 31014176 (-) True LOC110495994
TU1759987 other downstream 731532 30914369 ~ 30953308 (-) True LOC110495992
TU1759986 other downstream 770545 30911827 ~ 30914295 (-) False LOC110495992
TU1759310 other downstream 1081448 30602716 ~ 30603392 (-) True G1537091
TU1760970 other upstream 21773 31714506 ~ 31715181 (-) True G1538595
TU1761118 other upstream 364578 32057311 ~ 32058785 (-) True atp5if1a
TU1761767 other upstream 868993 32561726 ~ 32562120 (-) True G1539348
TU1762604 other upstream 1206845 32899578 ~ 32936569 (-) True G1540148
TU1762958 other upstream 1698606 33391339 ~ 33391752 (-) True G1540473

Expression Profile