RNA id: TU1760872


Basic Information

Item Value
RNA id TU1760872
length 1415
lncRNA type sense_over
GC content 0.34
exon number 1
gene id ash1l
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 31722514 ~ 31769106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGGAGAATGGCTGGTGGTCTTTGGGAAGATGGAGTGTGCGCTTTTGGTCAGTCAAGTGTCTTGTTTGGTTTGTGAGGCAGTCCACTTCACCCCTCTTTCTGAAGTACCTGATTCACCAGCTTAACTAAGTCAGGTGGCGGAACACTGGCTCTTACTGTAACGCCTTAGAGCGCCGTGATCCCTGACTGCCTTGCGtgagtgtgtgcgtatgtgtatgCACATTTATGTGTCAGTAATCTGCCAGAATTCTTGaagaaaaaatgaaaaaaattaagGGCTTGATGGCAATTAACATTTTATGGGAAATTATGGAAACATAAAATGTATCGTGATGGTCATATTTTCATATATTCTGTGAGGGGTATTTGTTGGGAGGGAGGAATTCTAGCTGTACATTTTATTCTTCAAATGTGTTCTGGTTGCCATGGAGAATACTTTtaaataatttgtgtgatttGATGAGATTTCTTTTTTTCCAAACACTTCTGTTTAAAATGGGACTTTGACCGAAATGTCCTATCAAGATGGACTGACAGACCGAGAGAGTAAAGAAACTGACAGAAAGAGGACAGAAAGTTGTACAGTGCCAAGTTATGTATATACAGACTGGGATTATGTGAGAAGTGTCTCCAAAAGCAATATCTTGATAACAGATTTTGTGTATTATTGTATTGTACAGAACTCAGACCCATATGTATTATTATAATGATTGTCTGCCATTTGTATTACTATAATCGAGACACTTAAGCTTGAAGGAGAAAGAAGAGGTGTTTTTGTCCAGTAAAATGTACCACAACTGTCCTAAATGAATGACATAAGAATTTTAACTGAATTTTTGTTCCCTAAAAATTAAATTCATCTATGTACTGCATGAGCAAGAAGAATGTCAAACGAACTTCATAAAAGGCATTGGGACATAAGTGACTCTGAAATTACATCTGTCGCTGTAATAATTAATATCAATAATTTTACTTTTGAGGAGAAAATATGCTCCTTGTTTTTGCTGCAAAGTGTTGAACACTAAAAAAACAAACCAACATAAAAATGTTATGATATTATGAAAGATGACAGAAACAAAAGTATAACTGTCAGCTAAATATGTTCTTCCTTTTTGGTTCTGTTTTTGTGATAGCAGTCATAAATATGATGCTTGTGCTTGTAGGctatttgtgtgttttgtgtgattTGTTTAGTTATTTTTAGACAATCACAAAATAAGATGCAAGCATTGTAAATGAGCAGACTGGCAGACATTTTGTGATGTGTACAGTTTGTCAACTTCTTCCACTCGTTAAAAGTTTGTAATTATGATTCTAAAGTCATGAAAATGCTGTTGGTTTTTACTTTTTGTTTTATAttctatttgtttttttttgtttgttttttaaataaaaagcaCTACATTATTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1760971 lncRNA downstream 6777 31715499 ~ 31715738 (-) True G1538596
TU1760867 lncRNA downstream 29844 31684879 ~ 31692671 (-) False LOC100136047
TU1760936 lncRNA downstream 63927 31657999 ~ 31658588 (-) True G1538561
TU1760932 lncRNA downstream 73938 31648271 ~ 31648577 (-) True G1538557
TU1760925 lncRNA downstream 79313 31643002 ~ 31643202 (-) True G1538550
TU1760977 lncRNA upstream 17553 31741482 ~ 31741850 (-) True G1538602
TU1760873 lncRNA upstream 46297 31770226 ~ 31771332 (-) True G1538500
TU1760986 lncRNA upstream 52714 31776643 ~ 31875585 (-) True G1538610
TU1761079 lncRNA upstream 182660 31906589 ~ 31917932 (-) True G1538691
TU1761127 lncRNA upstream 240076 31964005 ~ 31964594 (-) True G1538735
XM_021571625.2 mRNA downstream 29782 31684840 ~ 31692733 (-) False LOC100136047
XM_036952494.1 mRNA downstream 68279 31628863 ~ 31654236 (-) False LOC110496009
XM_021571620.2 mRNA downstream 68317 31628863 ~ 31654198 (-) False LOC110496009
XM_036952495.1 mRNA downstream 70126 31628863 ~ 31652389 (-) False LOC110496009
XM_036952492.1 mRNA downstream 187139 31530404 ~ 31535376 (-) True LOC110496005
XM_021571628.2 mRNA upstream 47683 31771612 ~ 31777330 (-) True LOC110496013
XM_021571629.2 mRNA upstream 55335 31779264 ~ 31784591 (-) False LOC110496014
XM_021571630.2 mRNA upstream 55335 31779264 ~ 31784591 (-) False LOC110496014
XM_036952506.1 mRNA upstream 55335 31779264 ~ 31784592 (-) True LOC110496014
XM_021571631.2 mRNA upstream 73139 31797068 ~ 31802818 (-) True LOC110496016
TU1760970 other downstream 7334 31714506 ~ 31715181 (-) True G1538595
TU1760868 other downstream 29844 31685752 ~ 31692671 (-) True LOC100136047
TU1760774 other downstream 199059 31516111 ~ 31523456 (-) True LOC110496004
TU1760029 other downstream 708339 31011878 ~ 31014176 (-) True LOC110495994
TU1759987 other downstream 769207 30914369 ~ 30953308 (-) True LOC110495992
TU1761118 other upstream 333382 32057311 ~ 32058785 (-) True atp5if1a
TU1761767 other upstream 837797 32561726 ~ 32562120 (-) True G1539348
TU1762604 other upstream 1175649 32899578 ~ 32936569 (-) True G1540148
TU1762958 other upstream 1667410 33391339 ~ 33391752 (-) True G1540473
TU1763210 other upstream 1878545 33602474 ~ 33610893 (-) False LOC110496048

Expression Profile