RNA id: XM_021571645.2


Basic Information

Item Value
RNA id XM_021571645.2
length 2006
RNA type mRNA
GC content 0.56
exon number 13
gene id LOC110496023
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32008229 ~ 32020839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGCGAAACAATGTAAACTCGCGATATCAGGATGGTTTGTACGAGGTTAGAGCCCTAGCTAGCTGAACCAATAGTGAGAAGTGAAAACTAGGAATTGAAGCGCAAACACGGATTTCCTGTGGGATAAACGCACAGGCCTGGCTGATATAACGATGCCACACTCGAGGCGGTACCCGTCCTCAGAAAGGGCCAGCCGGAGCAGCTATCAAGACCGGGACAGAGACCGAGGACGCAAGCAGAGGCACCGCAGATCGCCCTCTTTTTCCTCTAGCAGTGACCGGGAGAGGGATCGGGACAGAGACCGAAGGGGACGGGGAAACCGACAGGAGGGAAGCTACGCTCGCTCCAGGAGCTACGATAATCGCTCGGCAGACCGCAGGCCATACGACCGGCGCTACTGTGAGGGCTACCGCCGCCTGGACCAGAGCCACGAACGAGACCGCGGAAACAGGGAAAGGGAACATGGAGGTGCACCAGCAGCAGCCGACGGCGGTTACTACGCACGTGACTTCTCACCGAGCATGTGCGACTACCGGAGGGGGCGCGAGAGGGAACGGGAGGAGTCGTACCGAAGGAAGGGCAGCAGGCGTAAGCACAAACGAAGGCGGCGTAGAACCAGGTCCTATAGCCCATCCTCCTCGCGGAGTGACAGCCGGACGCGGGCACTGAGTGTGAGGGACGACGAGGAAGGGCACCTGATCTGTCGGAGTGGGGACGTCCTGCAAGAGAGATaTGAGATTGTCAGCACTCTGGGGGAAGGCACCTTTGGGAGGGTGATGCAATGTATTGACCATCGTCGGGGAGGGGCCGCTGTTGCTCTGAAGATCATAAAAAATGTGGAGAAATACAAGGAAGCAGCTCGTCTGGAGATCAATGTGCTGGAGAGAATCAATGAGAAAGATCCGGAAAACAAACACCTGTGTGTGCAGATGTATGACTGGTTCGACTACCACGGCCACATGTGTATCTCCTTCGAGCTGCTGGCCCTCAGCACCTTCGACTTCCTCAAGGAGAACAACTACCTGCCCTATTCCATCGCCCAGGTCCGACACATGGCCTACCAGCTCTGCCTGTCCGTCAAGTTTCTTCATGATACCAAGTTGACGCACACAGACCTGAAGCCAGAAAACATCCTGTTTGTCAATTCCGACTTCACTATGACCTATAATGTAGAGAAGAAGCGCGACGAGCGGACAGTGAAGAGCACGGACGTACGGGTGGTGGACTTTGGTAGCGCCACATTTGACCATGAGCACCACAGCACCATCGTCTCCACACGGCACTACCGCGCCCCGGAAGTCATACTAGAGCTGGGCTGGAGCCAGCCGTGTGATGTGTGGAGCATCGGTTGCATCCTGTTCGAGTACTACCTGGGCTTCACCTTGTTCCAGACTCATGATAACAGGGAGCAtctggccatgatggagagaatACTGGGGCCGGTGCCCTCCAGAATGATACGCAAGACAAGGAAGCAGAAATATTTTTACCGTGGCCGTCTGGACTGGGACGAGAGCTCGTCAGCTGGGAGATACGTGAGGGAGAACTGCAAACCCTTACGGAGGTACCTGTTGTCGGAAGCCGAGGAGCACCATCGGTTGTTTGACCTGATTGAGAGCATGCTGGAATACGAGCCCGCTAAGCGCCTGGCCCTGGCAGACTCCCTCAGACACCCTTTCTTCGAATCGGGGACAGCAGGCGATGCAGTGGGGGGGAAGAGCTGGGAGGGCAACCGCGACATCAGCCGGTGACCCGGGACCTCCACAGACTCTTAACGATAGAGCGATTTTTCAGGTGGAGCAGACCGATACGACCACTTCAGGCGGTACGGCCAAATTTGATGGACCTTATCAGTCTGTCTGAAATCCCTTGGCCATTCATCACAGCATGGACCCATTTCCTCCTGCTTACTGTACTGCCCCCACCCATCTCCACAGTTAGGAGAGAGGCTCATGCTGGCAGCTAGAAAACCAGAAGGACTTCAGAAAAAGACAGCCCTCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1760698 lncRNA upstream 16161 31991022 ~ 31992068 (+) True G1538342
TU1760676 lncRNA upstream 25195 31982609 ~ 31983034 (+) True G1538326
TU1760680 lncRNA upstream 28766 31979230 ~ 31979463 (+) True G1538330
TU1760673 lncRNA upstream 37473 31970502 ~ 31970756 (+) True G1538323
TU1760667 lncRNA upstream 42208 31963832 ~ 31966021 (+) True G1538317
TU1760692 lncRNA downstream 5755 32025784 ~ 32079330 (+) True G1538336
TU1760742 lncRNA downstream 60220 32080249 ~ 32080726 (+) True G1538382
TU1761372 lncRNA downstream 230158 32250187 ~ 32250417 (+) True G1538974
TU1761699 lncRNA downstream 485980 32506009 ~ 32506227 (+) True G1539280
TU1761729 lncRNA downstream 511061 32531090 ~ 32531297 (+) True G1539310
XM_021571643.2 mRNA upstream 278 31985759 ~ 32007951 (+) True LOC110496022
XR_005037430.1 mRNA upstream 358 31985755 ~ 32007871 (+) False LOC110496022
XM_036952507.1 mRNA upstream 55688 31924273 ~ 31952541 (+) False LOC110496020
XM_021571642.2 mRNA upstream 55688 31924847 ~ 31952541 (+) True LOC110496020
XM_021571639.2 mRNA upstream 88806 31881952 ~ 31919423 (+) False LOC110496019
XR_005037431.1 mRNA downstream 38023 32058052 ~ 32064812 (+) True LOC118941132
XM_021571654.2 mRNA downstream 321680 32341709 ~ 32351799 (+) False LOC110496027
XM_036952513.1 mRNA downstream 321701 32341730 ~ 32351799 (+) False LOC110496027
XM_021571653.2 mRNA downstream 321703 32341732 ~ 32351799 (+) True LOC110496027
XM_021571655.2 mRNA downstream 332026 32352055 ~ 32361874 (+) False LOC110496028
TU1760548 other upstream 254038 31753710 ~ 31754191 (+) True G1538208
TU1760346 other upstream 427909 31578167 ~ 31580320 (+) True LOC110496008
TU1760344 other upstream 435990 31568891 ~ 31572239 (+) True LOC110496006
TU1759494 other upstream 1180183 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 1710883 30297131 ~ 30297346 (+) True G1536720
TU1762072 other downstream 1000199 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 1038961 33058990 ~ 33059857 (+) True G1539671
TU1762993 other downstream 1435531 33455560 ~ 33458424 (+) False LOC110496797
TU1763041 other downstream 1469308 33489337 ~ 33491121 (+) True G1540551
TU1763040 other downstream 1515247 33535276 ~ 33537564 (+) True LOC110496043

Expression Profile