RNA id: XM_021571649.2


Basic Information

Item Value
RNA id XM_021571649.2
length 2829
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110496024
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32037155 ~ 32056879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGACCATAGTTAGGTTGATGCGTAGTTCTGCGTCGCAGAGTGGTGCTGGCGTTTTGCGAGCGACTGGACAGTCTCGTGGGTAGATTCAACCATACTATTCATATTGGATAACTATTTTGGTTAATTGTTGCAAAATATAGTTTTTCCATACTGTTATTTTCCTGGAGAAGATAGAGAATGGCTGCCGACGAGGTGAATGGTAGTTCTGCCCaggtgagggaggaagaggagcctATGGAAGTCACTGCCGAATGCGAGCACACGGAGAACTACCAGACACTAATCGATGCCGGACTGCCGCagaaagtggcagagagtctCGACAACGTATTCTCAACCGGGTTGGTGGCATATGCTGACCTGGACGAGAGGGCCATCGATGCTCTGCGGGAGTTCAATGAAGAGGGAGCGCTGTCTGTACTGTTGCAGTTCAAAGAAAGTGACCTGTCCCATGTGCAGAACAAAAGTGCTTTCCTTTGTGGAGTCATGAAGACTTACAGACAGAGGGAAAAGCAAGGAAATAAAGTACAAGAATCCACCAAGGGGCCTGATGAGTCCAAGATCAAGGCTCTGCTGGAGCGGACAGGATACACCCTGGACGTAACTACAGGACAGAGGAAATACGGCGGGCCTCCACCAGAGGAAGTGTTCCAAGGAGCACAGCCTGGGATTGGAACTGAGGTGTTTGTGGGAAAGATCCCCAGAGATCTGTATGAAGACGAGCTGGTGCCACTGTTTGAAAAGGCGGGCCCTATCTGGGACCTGAGGCTAATGATGGACCCTCTGTCTGGTCAGAACCGGGGCTACGCCTTCATCACCTTCTGCGGCAAGGATGCTGCAGCTGAGGCTGTGAAACTTTGTGATAACTATGAAATCCGGTCTGGGAAGTACCTTGGAGTGTGCATATCTGTAGCAAACAACCGCCTGTTTGTTGGATCAATCCCAAAGAACAAGACCAGAGAGAGCATATTGGAGGACTTTGGCAAAGTCACAGAGGGGCTTCAGGAAGTGATTCTCTACCACCAGCCTGACGACAAGAAGAAGAATCGTGGCTTCTGTTTCCTCGAGTACGAGGACCACAAGTCTGCAGCCCAGGCCCGCCGCCGCCTCATGAGCGGCAAGGTGAAGGTTTGGGGGAACCCGGTCACTGTTGAGTGGGCCGATCCGGTCGCTGAGCCCGATCCGGATGTCATGGCTAAGGTGAAAGTCCTATTTGTCAGGAAGCTCGCCACCCCGGTCACAGAAGAGCTACTGGAGAAGACCTTCTCTGCGTTTGGAAAGTTGGAGCGGGTGAAGAAGCTCAAAGACTATGCCTTTGTCCACTTTGAGGACAGGGATGCAGCTGTGAAGGCAATGGCAGAAATGAATGGGAAGGAGCTTGGGGGAGAGGAGATTGAGATAGTCCTAGCCAAGCCCCCAGACAAGAAGAGGAAAGAGCGGCAGGCTCATCGCCAGACCACCAGAAACCCAGGGTATGATGACTATTACTACTACCCACCGCCACGCATGCCTCCACCAGGTAGGGGCAGGGGCCGTGGTGGCCGTGGGGGCTATGCCGCCTACCCCCCAGACTACTACAGCTATGAGGACTACTACGATGACTACTATGACTATCACGACTACCGTGGGGGTTACGAGGACCCCTACTACGGTTACGACGACGTGTACAGCATGAGGGGCCGTGGCAGCCGGCCAAGCAGGGGAGGTCCGCCCCCACCCAGGGCCCGCGGAGCACCACCCACACGAAGCCGAGGGGGCTATGCCCAGAGGGGGCCACCAATCGGCGGGCCCAGGGGTGGCAGAGGGGGCCGGGGGGGACCCTTCCAGCCACAGAGGGGCCGCGGTACCCGAGGAGCCAGAGGGAACCGCGGGGGCAATgtgggagggaagaggaaggcgGATGTCTTCAACCAGCCTGACTCCAAACGCCGGCAGACCAACCAGCAGAACTGGGGGTCTCAGCCCATCGCCCAGCAGCCCCTGCAGCAAGGGGCCGACTATTCCGGTAACTATGGTTACAGTAATGACACCCTGGAGTTTTCACAGGATTCTTATGGGCAGCAGTGGAAGTAGACGCGTCACAATCGTTATTTggcaaaataaaattaaaatacagaaaaaaaacGTAAGGAGTTtggcaacacttttttttttttttttttatgcctCACGGGGAAAAAATATTTCACTGAGAGAGAAAATGGACAGACCCCCAGAATTGGCACAACATGATTGGCTGGAATAGTATTTTGGCCTGAAGATGTGAATGTAACCATTTTGCTGAATCATTTCTTACGGTTACATGTGCGTTTTAAGACATACCCCCCCATCACTTTTACCTTCCAACATTTTGTTTCTTTTAAAGCCAACAATGAGCATTTTAAATGTGGACATTCATTTTCAAAAGTCTGAGAGGCTGTTAAAATCATGATATTGCCTTGCAGGAAAGTTTGTGTCCAAGCCCCTTCCTCCCCTACCTATGTTCCCCTTATTTCTGTTTTCTAACAGTAGCATAGGGACTTGCTTGTAAATAGTTGCTTATGGCTAGAGCTTCATATACATTTTTTTGCCGTGATGGAGAAAATCCACAGGAAGGAGAGAATGTAAACGTTTTGTAATGTTGAAAGTGTATGTCTAGCATTTCTAGAGGTAGATCAATTGTGTTTTTTAAAACTGATATTATTATATAACTTCCTATGTTTTCTTTAAACTTGCCCGTTAGAATTTGGTTTGGCTTACCTTAAAAGCCATAGCAGTTTGTTCTCGTGATGTTTGTATTTATAACTTTTACCTTTGTTCCATTTCAATAAAACTCAGTTGAGAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1761121 lncRNA downstream 14392 32021457 ~ 32022763 (-) True G1538729
TU1761138 lncRNA downstream 54225 31982540 ~ 31982930 (-) True G1538746
TU1761137 lncRNA downstream 56014 31980536 ~ 31981141 (-) True G1538745
TU1761136 lncRNA downstream 57359 31979531 ~ 31979796 (-) True G1538744
TU1761127 lncRNA downstream 72561 31964005 ~ 31964594 (-) True G1538735
TU1761175 lncRNA upstream 23005 32079853 ~ 32080084 (-) True G1538783
TU1761195 lncRNA upstream 69761 32126609 ~ 32126919 (-) True G1538803
TU1761202 lncRNA upstream 73906 32130754 ~ 32131032 (-) True G1538810
TU1761214 lncRNA upstream 82018 32138866 ~ 32139078 (-) True G1538822
TU1761216 lncRNA upstream 82638 32139486 ~ 32139822 (-) True G1538824
NM_001160670.1 mRNA downstream 4620 32026557 ~ 32032535 (-) True dnjc8
XM_021571631.2 mRNA downstream 234337 31797068 ~ 31802818 (-) True LOC110496016
XM_036952506.1 mRNA downstream 252563 31779264 ~ 31784592 (-) True LOC110496014
XM_021571629.2 mRNA downstream 252564 31779264 ~ 31784591 (-) False LOC110496014
XM_021571630.2 mRNA downstream 252564 31779264 ~ 31784591 (-) False LOC110496014
XM_036952512.1 mRNA upstream 432 32057280 ~ 32058262 (-) False atp5if1a
XM_021571651.2 mRNA upstream 432 32057280 ~ 32058819 (-) False atp5if1a
XM_021571652.2 mRNA upstream 30379 32087227 ~ 32114802 (-) True LOC110496026
XR_005037328.1 mRNA upstream 115700 32172548 ~ 32173426 (-) True LOC118941048
XR_005037432.1 mRNA upstream 279773 32336621 ~ 32347681 (-) True LOC118941133
TU1760970 other downstream 321974 31714506 ~ 31715181 (-) True G1538595
TU1760868 other downstream 344484 31685752 ~ 31692671 (-) True LOC100136047
TU1760774 other downstream 513699 31516111 ~ 31523456 (-) True LOC110496004
TU1760029 other downstream 1022979 31011878 ~ 31014176 (-) True LOC110495994
TU1759987 other downstream 1083847 30914369 ~ 30953308 (-) True LOC110495992
TU1761118 other upstream 463 32057311 ~ 32058785 (-) True atp5if1a
TU1761767 other upstream 504878 32561726 ~ 32562120 (-) True G1539348
TU1762604 other upstream 842730 32899578 ~ 32936569 (-) True G1540148
TU1762958 other upstream 1334491 33391339 ~ 33391752 (-) True G1540473
TU1763210 other upstream 1545626 33602474 ~ 33610893 (-) False LOC110496048

Expression Profile