RNA id: TU1761118


Basic Information

Item Value
RNA id TU1761118
length 524
RNA type TUCP
GC content 0.47
exon number 3
gene id atp5if1a
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32057280 ~ 32058819 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCACACAGTGAAATTGCACATTTCCGCATGTGAAAGTACACAGCGAAGTACTTTCTGCTGCAGCAGGGCTGTTAATCTGCGTAGTTGAGAAATTGTAATGGCGAGGCTACTATTAAGATCCAATTTTCGGGGCTTCTTTGCCACCCAATTCAGGATGACATCCGACCAGctggGTGAGCTGGGCAAAGGAGCAGGAAAGGGAGGCGGTGGAGGAGGCTCGGTGAGGGAGGCAGGTGGTGCCTTTGGAAAGAAGCAAGCTGCAGAGGAGGAGCGTTATTTTCGTCAGAAGGAGAAGGAGCAGTTGTCTGCCCTACGGAAGCACCATGAAGAGGAGATTGACCACAGCAAGAAAGAAATTGAGCGTTTGCAGCGTGAGATTGACCGTCACAAGGGCAAAATCAAGAAACTGAAACATGATGACTAAGCTCAGTCTTCATTCACACTGCTTACATTAGGCCAAATATCACCCATTTGCCTGATTTTGTGTTTTTAGGCAATTGTATAATAGTTACATTCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1761121 lncRNA downstream 34548 32021457 ~ 32022763 (-) True G1538729
TU1761138 lncRNA downstream 74381 31982540 ~ 31982930 (-) True G1538746
TU1761137 lncRNA downstream 76170 31980536 ~ 31981141 (-) True G1538745
TU1761136 lncRNA downstream 77515 31979531 ~ 31979796 (-) True G1538744
TU1761127 lncRNA downstream 92717 31964005 ~ 31964594 (-) True G1538735
TU1761175 lncRNA upstream 21068 32079853 ~ 32080084 (-) True G1538783
TU1761195 lncRNA upstream 67824 32126609 ~ 32126919 (-) True G1538803
TU1761202 lncRNA upstream 71969 32130754 ~ 32131032 (-) True G1538810
TU1761214 lncRNA upstream 80081 32138866 ~ 32139078 (-) True G1538822
TU1761216 lncRNA upstream 80701 32139486 ~ 32139822 (-) True G1538824
XM_021571650.2 mRNA downstream 432 32037909 ~ 32056879 (-) True LOC110496024
XM_036952509.1 mRNA downstream 436 32037909 ~ 32056875 (-) False LOC110496024
XM_021571648.2 mRNA downstream 462 32037909 ~ 32056849 (-) False LOC110496024
XM_021571649.2 mRNA downstream 463 32037155 ~ 32056848 (-) False LOC110496024
XM_036952510.1 mRNA downstream 519 32037909 ~ 32056792 (-) False LOC110496024
XM_021571652.2 mRNA upstream 28442 32087227 ~ 32114802 (-) True LOC110496026
XR_005037328.1 mRNA upstream 113763 32172548 ~ 32173426 (-) True LOC118941048
XR_005037432.1 mRNA upstream 277836 32336621 ~ 32347681 (-) True LOC118941133
XM_036952515.1 mRNA upstream 306807 32365592 ~ 32406175 (-) False LOC110496030
XM_021571661.2 mRNA upstream 306807 32365592 ~ 32417818 (-) False LOC110496030
TU1760970 other downstream 342130 31714506 ~ 31715181 (-) True G1538595
TU1760868 other downstream 364640 31685752 ~ 31692671 (-) True LOC100136047
TU1760774 other downstream 533855 31516111 ~ 31523456 (-) True LOC110496004
TU1760029 other downstream 1043135 31011878 ~ 31014176 (-) True LOC110495994
TU1759987 other downstream 1104003 30914369 ~ 30953308 (-) True LOC110495992
TU1761767 other upstream 502941 32561726 ~ 32562120 (-) True G1539348
TU1762604 other upstream 840793 32899578 ~ 32936569 (-) True G1540148
TU1762958 other upstream 1332554 33391339 ~ 33391752 (-) True G1540473
TU1763210 other upstream 1543689 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other upstream 1545363 33604148 ~ 33610893 (-) True LOC110496048

Expression Profile