RNA id: XM_021571652.2


Basic Information

Item Value
RNA id XM_021571652.2
length 7032
RNA type mRNA
GC content 0.52
exon number 30
gene id LOC110496026
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32087227 ~ 32114802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACGAAGCCGGGAGTAAAAGTACCAACAATATATTGGAGCTCGTAAAGGAAAGACAAGAACACATATTCTGCTTTCAGGACTCTTTGGAGCTCCAATATACAATCAATTCGAAATGTGGCTATAGTCAGTTTATCTGGATATAGCAACAGAGAAAAGTTGGTAGTACACTCTTTGGAGTTTGGTCAGAGTCGTTTAATTTGACATTTGCTTGTGGAAGTGGACACTGCTCTAGAACTTGGGATCGATCCGACACAGTCGGGTCTGGACTTGCCATTTACAGTTTCTGCTGTCGCCCCTTGCTGAACGTTTTGGCCCGAACATTCTTCGATGACAACATGAAGACTTCGAAAGTTGCTTCCTGAATCCAGCTCGAGTAATTGTGGACCTTTGAATGGAGAGTGTGCACTAATAGAACGTTCTTAAGACACAGCTTTGACacatgactgtctgtctgtcccactgaAGCCTTTGAGCCCCATCTAATTCCTCAGAGACTAAACCAACAAGGACCAAGCAACCGAAGTCACATTGCAACAAATTGCATAAATAGAGGAGAGAAAAAAGAGTGAAATCGATTTGTGTCTCCTCGAAACACCCTCTCAAAGCGACCACACAATGACGTGGTCACCTCCCCAGTCCGGGCCCTTTGTGGCCCTTTTGGCCCTTCTTTTCCTCGGTTTGACTTCCAGCGTCCCTTCCGGCCCGGCCTCTGATACCTGCGCCTCCCTGGAGCAGAGCCGCTTCTTCGGGCTGTTCTCTTCGACCGCCAACCTGCCCTCCACGCCGTGCTCCTGGACCCTGCAGAACCCAGACCCTCGCCGCTACACCGTCTACATGAAGATCACCAAGCCCACCGACTCCTGCCTGCCCCGCCAGGTCAAGACCTTCCAGTTCGACTCCTTCATCGAGACCTCTCGCACCTACCTTGGTATGGAGAGCTTTGATGAAGTCGTCAGATTGTGTGACGCTTCAACTTCTGTAACCTACCTGGAGTCCAGCAAGCAGTTCCTGCAGCTCCGCAAGGTGGCGCCAAGACACGGCCTGGAGattgtggagggagagagcagcggCGAGTTCAAGGCCGAGTTCCTGGTGGTGGGCAAGAGGAACCCCAGTATGCCAGCCTGTCAGAAGCTGTGCCAGTGGCTGGAGAATTGTTTGTCCACCAGCACCCATCTCAACCCCTGCGGCATCATGAACACCCCCTGCCAGTGCTGGGAGACCCCCGTCAGGAAGCCCGGCGGCTGCTACCGTGGAGGCGTCTACCTGGAGAAGTGCATCCCAACCCCCCGAGACACTGGACGTGAAATTGTACGCGACGCCGAGATCATAAAGGGCTGGAGTGGGTGGGGCCGCTGGTCTGAGTGCAGTATGGAGTGCGGGGGTGGAGTCCAGGTGCGCAGCCGAGCCTGTCAGCCAGAGGATAGTGTGTGTGAAGGCGTGGTCGAAGAGGGGCGGGCCTGCAACCCTCAGCCCTGCATTGGTCAAGTGCACAGCCGTAGCCAAGCCCTGGCTTCCATCGTCGGCCTGAAAAGAGACAACACTGATGTTCCTATCACTGGAGTTGTGGCCCCTCAAACAGTGGATGCTGCTGCGGTTGCAGATGAGTGGTCCCCCTGGAGTGTGTGTTCAGTGAGCTGTGGAGAGGGCTGGCAGGCCCGCTCCCGTTTCTGTGTTACCTCCTCCTACAGCACCCAATGCACCGGCCCCCTCCGCGAGAACCGGCCCTGCAACAACACCATGGTCTGCCCCGttGATGGAGCTTGGGACGAGTGGTCCCCATGGAGCCTGTGCTCTTCCACCTGCGGCCGTGGTTACCGTGACCGCACCCGCATCTGCAAGCAGCCCCAGAACGGAGGAGAACCCTGCAAGGGACCCATCAAACAGACCAAGTTCTGCAACATCGCAGTCTGCCCAGTGGACGGTGCCTGGAACGAATGGTCTGGTTGGACCACCTGCTCCACCTCTTGCTCCAATGGCACCAAGCAGAGGACACGTGAATGCAACGGGCCGTCCTACGGAGGTTCGGAGTGCCGTGGTGACTGGCGTGAGACCAATAACTGCTTCCTGAAAGATTGCCCAGttGATGGACGCTGGTTGTCATGGAGCTCATGGGGAAGCTGCAGTAAGACCTGTGGGGGAGGAAGCCAGCAGAGACAGAGGATGTGCGAAGGACCTTACTTCAGTGGAGAGACttgccctggagagagaggagagctgagacGCTGCAACGAGAAAAGATGCCCAGAACCCCATGAGATCTGTCAGGAGGAGACCGATGGTGATGTTGTGTGGAAGAGAACCCCAGCAGGAGATATGGCGGCCGTGACCTGCCCTACAGACTCCACCGGCATGATCTTGCGCCGATGCACCCTTGGCGCTGTAGGCCTTGCTTATTGGGAGAACCCGACCCACATCAAGTGCATCTCCAAGAACTACCAGGACATTTCCTTGTTGGCCCAGCATGGTGTTGATAAGGCTCAGAAGGGCCTGATGGCTGATGGGATTTCTGAGGTGATCTCCCGACTGAGGGCCACCTCTGATGAGGGGACCAAGTACAGCGGAGACCTGTTGTCCATCATGGATGTACTCAGGAACACCACTGAGATCTACAAGGGAGTCGGATACAGCCTGAGCAATGCTGATGTGGAGAACTATGCCCAGACAATCAGCAACTTACTGAAGGAGGAACATCATGACAAATGGGAGGAGGCACAGCTGATGGGCACTAACATCAAGGAGTTCTTGCAGCTTGTCGAGGACTTTGTGGACATGATCGGTATGCAGATGAAGGACTTCCAAGACATTTATGAAGTCACCGAGAATTTAGTGTTGAGCATCCATAAGCGCCCCACAACCATGACCACCGACTTCACCTTCCCAGTGAGAGGATGGAGAGGCATGATGGACTGGGTCAGGACCTCAGAGGAGAAGATCACTGTTTCCCGTGATGCTCTGTCCATCGACCAGTCTGagggCACCACTGCATTTGTGACCGGGATCATTCTCTACAGAAACCTCAGCTCTATCTTGTCCTTCCAAAGTAACAGCACCGTCCTCGACTCCAAGGTAGTCACAGTTATGGTCAAGCCCACCCCAGGCCTGCTGTCCCCCCCAGTGGAAATCGAGTTCCCCCACCAACATAATGACACCATAAATGAAACTTGCATCTCCTGGGATGAGAGTGAAACTTCTTCGCTGCTTGGATCTTGGTCTGCGCGTAGCTGCAGAGCGGTCGCTGTTGATTCATTCAGAACCAAATGCGTGTGTGACAGGCTCTCCACCTTCGCCATTTTAGCGCGTCtaaaccctgatatgAACATGGATAAGAATCTTCTTCCCTCTGTGACACTCATCGTGGGCTGTGGGgtctcctctctcacccttctGCTCCTCATCATTATCTATGTCTCCGTCTGGAAGTATATCCGCTCGGAGCGCTCAGTGATCCTCATCAACTTCTGCCTCTCCATTATCTGCTCCAATGCCCTCATTCTGGTTGGACAAACCCAGGCTCGCAACAAGgtggtgtgtggtgtggtggctgCCCTCCTCCACTTCTTCTTCCTCTCATCTTTCTGCTGGGTGCTGACGGAAGCGTGGCAGTCCTACATGGCTGTCACGGGCCGTCTGCGCAACCGCATCATCCGCAAGCGTTTCCTCTGCTTAGGCTGGGGACTCCCTGCTCTGGTGGTGGCTGTGTCTGTTGGATTTACCAAGGCTAAGGGATATGGCACCGTCAACTACTGCTGGCTCTCTCTGGAGGGTGGACTCCTCTACTCGTTCGTTGGGCCCGCtgctgctgttgttctgGTGAACATGGTAATTGGCATCCTGGTCTTCAACAAACTGGTGTCCAAGGACGGCATCACCGATGTCAAACTGAAGGAGCGAGCGGGAGCGTCCCTGTGGAGCTCCTGTGTGATTCTGCCCCTGCTGGCCCTCACCTGGATGTCCGCTGTCCTGGCCATGACCGACCGCCGCTCCGCTCTCTTCCAGATCCTCTTCGCTGTCTTTGACTCCCTGGAAGGGTTCATAATCGTCATGGTGCACTGCATCCTGCGTAGAGAGGTCCAAGAGGCAGTGAAATGCAGAGTTGTTGACCGTAAGGACGATGGCAATGGAGATTCTGGCAGTTCCATCCAAAATAGCCACCACACCCAGCTCATGTCTGATTTCGAGAAGGATGCTGAATCCAACAGACCTGGTGGTATGAACTCTTCCTGTGAGGAGAAGATgcccctcccacctcagctgcCCCTCCCCATGAGCTCCAACTTCCACACCCTGCCCTCCCACACCACCAAGGCCCACATGCAGGCCGTGCCCGAGTACTCCAGCCACACCCTCACTCTGAAGAGGGAGAAGAGTTGGCTGCATGGCGGCATGGACCCGTCCTCCTGCGGGAAACCCATTTATGTGTGCGACGGTGAGCTCTTCCAGCAGCTGGATGCCGACCTGGTGTGCGGCCAGGCGGAGGGGAGCTGCCCCGACGGTAGCGGCTACTTGCTCCTGCCCAACACCACCTCCACCCTTCGCAAGGCCAAAGAGGACCCGTCCAAGTACAACATCAGCGTGGAGCAGCTTCCACAGACCAGGCTGGTTCATCTCAGTGGGCCCTTCGCTGAGCCCCAGGCTGCCTTCGGACTCAAGACGCTACCGTCCGACCGGGTCAGCGTGTCCTACTCGGAGAGGGACTCTCCCATCCAGAACATCCACAACATGTCCAGCGAGTCTCACATCACCCACAGCAGCCTGGGAGACACCTTCGACTCTATGAACTCCATGATGTCCAAGAGCGAGACCATCTCCACACTGTCCATGAGCTCCCTGGAGAGACAGAAGTCCCGTTATGCTGAATTAGATTTCGAGAAGATCATGCACACAAGGAAACGTCACCAGAACATGTTCCAGGACCTCAACAGGAAATTACATCACGCTGAGAAACAAGACAGAGAGTCCCCTGCTTCAGACAGCAAGTCTGTGAGATGGAGTGTGTCCTCTGGAGGAAGTGACAAAACAAACCACAGCGACAAGCAGCAGCAACAGGTGGAGAGACCCTGGGATGGGGTCCAGAGGACGCAACATTCACCGCCTGCCTGGGTGCGGAAAGACCTAGAGCCCCTGGCCGTGTCGCCCCTGCATATGCAGCAGGTGGAGTGGGAGAAGGCTGGAGCCACCATCTCAATGGTCAGCCAGGACATCATCGACCTGCAGACGGAGGTCTGAGAGGATGAGCCTGAGATTGTTCCTTATAGTTCAAACTCGGTCACCTATTCTATTGGTTTGGGGAGAAGAAGAGCCAATGGATccacatggagagaggagaggaagccaaGAACGAACAAgcgaagagaggtgggggaagagagagctgagagagtgCTGAACCCAGAATACATGTCTACAAACCCTCGAcaggagaaagatggagagagatgaaagGAGGGAGGCTATTGTGTTGTCAAGATTTGTTTTCCAGCAAGGACATGATATTGAGCAACACTAGAGAAGCAGTTTGATATTGACTGGTGGTTAGTATCAGATAGTGGCGAATGGTTCCAAGGATTGGTTCTGGTTCTGTTTGTGGTCTGACCATAGAGGTTTCCTTTAATCTTCCGACTGGGTTCAAGAGAGGTGTGGTCGACATGGTTAACATGCGGTCAACAGGCCACTTCGACTCGTTTTAAAACAGTGGGTTTCACTCTACGCCTGAGCTCTAACCAAACCGAACATTTGTACTTTTGTGTTTGCGGCCAAGGCATCTTCCAAGTTAGCTAGGACAAGGCAAGAAGAGACAACTGGACTCCCATCAGACTTGGTGTCTGAACTCAACGCTGTGGTTTATGGACACACCCTTTAATTGCTGTGTTGTAGCTATTATTTTCTCGCTTTGCCAGGAAGTGCATCTAAAGAGCTTCAAAGACTCTTCCATGAGAACTCTCTTCTTGAGACTATGATGCCTATACTGGAGACAAGGCTTGATCATGCTTACAGAGCAGaacattattattatcatgttattatattattattattattattacctgtattttgttttattgttttagCATCGATCGCAGTTTTCAAAAGGACTGCATAGCATTCAGACAGTCAGCGTGTTGGTGGGAACCCTGGTTATGCCTGTGTTCTGCCTCCGCAGCACATGACAGACACATGGAAGAACATCAAGCTCTGTTACAGGAAGAGCAGTGTATTCTGGGAACTGCTGAGCAGCATCATTAGGAAGTGTTGGACAAAGACCATTAGATTCCCACCTCCAGTTCCCAATAAACAAGAGCCCCCGCTATTGGACCTCTTTTCCTTCCTGCGACACACACAGCCTTGCAGAAAGAGCTCTAGATCCCAGGACTATAAGCTGTGAGGCACTTGCCAACGACATGACTTCACTTCCGCAGTGCCAGCTACAAAGGACTCCGACACAACATCCTTGTGTTTTAAAACCATCAGTGTGAAACTAGTGCAATATGATGGGCGCTTGATGCTCAAGCTGGACTGATATCAGAATTATGAGGCCGGTTTTTCTTAAGATGTTTCAATACTCTTTTATAACATGTTCCTCATATTTACAGAGCATATAGATACTTTGTTGTCTAACAAATCTGTGTTAGTAATGAAACACATGAATTCAATAGAGGTTTGCTTGTGTTCCGAGTGGAAGCGCAAGACTACAAATTATTTGGAGGTCTGTGATTAGTAGATTATTCTAATTCTAAAAAGCAAATGTTATATAGAATTAATAATAGCCTATAAGAATATATCTAAAAACAGTGCTTCAGGATAACTGTTTTGACTCCATACCTCACTGTGTGGAGTAACTGAACCTCATGTCTTCTGTAATAGTGTGTTTTTGATAATCTTGTCAATATTGCACTACAGTATGTGCCAAAAATCTTTCCTGTCCCCTATTTCCTTCCTAGCCATAGTGCCCCCCTCTTGTTGTAAATGTATAGTTTTGAGAGCACAAGATGAATGTGATTTTttggaataaaataaaaacatctatATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1761175 lncRNA downstream 7143 32079853 ~ 32080084 (-) True G1538783
TU1761121 lncRNA downstream 64464 32021457 ~ 32022763 (-) True G1538729
TU1761138 lncRNA downstream 104297 31982540 ~ 31982930 (-) True G1538746
TU1761137 lncRNA downstream 106086 31980536 ~ 31981141 (-) True G1538745
TU1761136 lncRNA downstream 107431 31979531 ~ 31979796 (-) True G1538744
TU1761195 lncRNA upstream 11807 32126609 ~ 32126919 (-) True G1538803
TU1761202 lncRNA upstream 15952 32130754 ~ 32131032 (-) True G1538810
TU1761214 lncRNA upstream 24064 32138866 ~ 32139078 (-) True G1538822
TU1761216 lncRNA upstream 24684 32139486 ~ 32139822 (-) True G1538824
TU1761245 lncRNA upstream 49144 32163946 ~ 32164264 (-) True G1538852
XM_021571651.2 mRNA downstream 28408 32057280 ~ 32058819 (-) False atp5if1a
XM_036952512.1 mRNA downstream 28965 32057280 ~ 32058262 (-) False atp5if1a
XM_021571650.2 mRNA downstream 30348 32037909 ~ 32056879 (-) True LOC110496024
XM_036952509.1 mRNA downstream 30352 32037909 ~ 32056875 (-) False LOC110496024
XM_021571648.2 mRNA downstream 30378 32037909 ~ 32056849 (-) False LOC110496024
XR_005037328.1 mRNA upstream 57746 32172548 ~ 32173426 (-) True LOC118941048
XR_005037432.1 mRNA upstream 221819 32336621 ~ 32347681 (-) True LOC118941133
XM_036952515.1 mRNA upstream 250790 32365592 ~ 32406175 (-) False LOC110496030
XM_021571661.2 mRNA upstream 250790 32365592 ~ 32417818 (-) False LOC110496030
XM_021571658.2 mRNA upstream 250790 32365592 ~ 32417820 (-) False LOC110496030
TU1761118 other downstream 28442 32057311 ~ 32058785 (-) True atp5if1a
TU1760970 other downstream 372046 31714506 ~ 31715181 (-) True G1538595
TU1760868 other downstream 394556 31685752 ~ 31692671 (-) True LOC100136047
TU1760774 other downstream 563771 31516111 ~ 31523456 (-) True LOC110496004
TU1760029 other downstream 1073051 31011878 ~ 31014176 (-) True LOC110495994
TU1761767 other upstream 446924 32561726 ~ 32562120 (-) True G1539348
TU1762604 other upstream 784776 32899578 ~ 32936569 (-) True G1540148
TU1762958 other upstream 1276537 33391339 ~ 33391752 (-) True G1540473
TU1763210 other upstream 1487672 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other upstream 1489346 33604148 ~ 33610893 (-) True LOC110496048

Expression Profile