RNA id: XR_005037432.1


Basic Information

Item Value
RNA id XR_005037432.1
length 1628
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC118941133
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32336621 ~ 32347681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACTAGAATAGCTTAGACTCAGCTCCCAGACTGTGACGGAAGAGACTTGGAAGGATGGCAACGCGAGACTagtcttacatgctgaccacaccgctcacgTTCCGTGCGCTGCAaaataaatatacacatacatgttattcagtaATTTCATCCAAACAGCTTGAGCGGCTGCATAGCCAggcactaaaatagaacttggttagATTTTTGACACTTGATGCACTGGAAAGATGAACtaaggtccacactccagtccagttggtggtggtaatgcactttaaagttggttgccaaccgccataaaGTCCACAGAAGAAAAAGAATGAAGGAGGAGTGATTACTAGAAACCAACCAGgtttccccttttatctgtggattcatTGTCAGAGTAGAGAACACATGATTTTGTGTGACTCATGAGTCAATATTCTACAAAGAAGAAGAGGACCTTGTTCCTTTCAGGTTATGAGAATCTACAGTCGGAGGCTGCAGCAATATCCCTTGACTGTACCTGAAACGATACAAGATCACCAGTGAAATGTAACCAGTGGAATGGAAGAAGAATTCCTAACGAATGGCAGACAGTCAGAACATCATTTccaatagttatctatgggactgataccagtgtggaagagctggtcacttTTAAAGGGACTTTGTGAATGATTACATTCACAATAGGACATTTGAATATTATTGTATTGCAGACAAGTGAAAGATGTTTGACATTTCTTTTCTTGTGAGTTTCCTCCTAATTCTGAATGTGGGTGGGGTTTCCATTTCTAACACGGAGATGCATCAGCAGGATGAGGGACACTCGGGCGTCAATACGTTTCTCTCTCTACACAATGCCACAGTTGTCAAAGTAGTTGCGGTGTTTGTACATCTTCTCCATTTACATCAAGGGCAGGTATTCCATTAAGGGTTATTCCTTTTAACCAGAGTGAAATGTTGGGTTTCTGGAGATATGTTAATTGGTATAAGGCAATTATTGGTACTAATATGGGTGATAATTTTGAGTGTCACATGTGAGAGTACCTCCAGTACCTTCCTTAATTTGAGATTTTCAATGACACTAATCAGCGACCACCTTACCTAGTATTTATACATGCCCCTGTTTGGGTGGTTGTTTTAATAGGTCACTCTCTGAATTTGTCTCAACTGCACCAGGACGCGTTTGTCAAAGTAGGACAGAGTGAGCAGACAGATCTGCCTGTGACAGTTGAATTGATTCTCAGTAATGGGACTTACTTTATCTGTGGATCCTATGCCTATTCCTGGTTACCAAAGTTGTGGAAAGGGTCGTGTTATTTGGAATATGTAAGATATTCTGTGAATTCTCCTTTTTCACAACGTCATAAAAGGGATATCATAAGATTCATCAATGGTGTCAGTGGTGTTCACAAGAATGTGGTAGGGATCATAAGGCTCTTCGTCATCACAGCAAGCCTCATGATTGTGGTCAATGTGCCCGTTGTAACTGTCCTCGGTGCTGTAACGAATCATGCGCTCTCAGATGTGGTATCACAACTGTTAATACCTCTTTTCTATAACTTTGTGTGAAATCTATTTCTTATTGCAACGGCAAATAAAATATGCCCTTTGTGTTTTATAGGAATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1761370 lncRNA downstream 87541 32248558 ~ 32249080 (-) True G1538972
TU1761245 lncRNA downstream 172357 32163946 ~ 32164264 (-) True G1538852
TU1761216 lncRNA downstream 196799 32139486 ~ 32139822 (-) True G1538824
TU1761214 lncRNA downstream 197543 32138866 ~ 32139078 (-) True G1538822
TU1761202 lncRNA downstream 205589 32130754 ~ 32131032 (-) True G1538810
TU1761675 lncRNA upstream 128312 32475993 ~ 32476237 (-) True G1539256
TU1761696 lncRNA upstream 154396 32502077 ~ 32502335 (-) True G1539277
TU1761700 lncRNA upstream 158615 32506296 ~ 32506516 (-) True G1539281
TU1761707 lncRNA upstream 170269 32517950 ~ 32518151 (-) True G1539288
TU1761714 lncRNA upstream 170997 32518678 ~ 32524682 (-) True G1539295
XR_005037328.1 mRNA downstream 163195 32172548 ~ 32173426 (-) True LOC118941048
XM_021571652.2 mRNA downstream 221819 32087227 ~ 32114802 (-) True LOC110496026
XM_021571651.2 mRNA downstream 277802 32057280 ~ 32058819 (-) False atp5if1a
XM_036952512.1 mRNA downstream 278359 32057280 ~ 32058262 (-) False atp5if1a
XM_021571650.2 mRNA downstream 279742 32037909 ~ 32056879 (-) True LOC110496024
XM_036952515.1 mRNA upstream 17911 32365592 ~ 32406175 (-) False LOC110496030
XM_021571661.2 mRNA upstream 17911 32365592 ~ 32417818 (-) False LOC110496030
XM_021571658.2 mRNA upstream 17911 32365592 ~ 32417820 (-) False LOC110496030
XM_021571659.2 mRNA upstream 17911 32365592 ~ 32417820 (-) False LOC110496030
XM_021571657.2 mRNA upstream 17911 32365592 ~ 32417821 (-) False LOC110496030
TU1761118 other downstream 277836 32057311 ~ 32058785 (-) True atp5if1a
TU1760970 other downstream 621440 31714506 ~ 31715181 (-) True G1538595
TU1760868 other downstream 643950 31685752 ~ 31692671 (-) True LOC100136047
TU1760774 other downstream 813165 31516111 ~ 31523456 (-) True LOC110496004
TU1760029 other downstream 1322445 31011878 ~ 31014176 (-) True LOC110495994
TU1761767 other upstream 214045 32561726 ~ 32562120 (-) True G1539348
TU1762604 other upstream 551897 32899578 ~ 32936569 (-) True G1540148
TU1762958 other upstream 1043658 33391339 ~ 33391752 (-) True G1540473
TU1763210 other upstream 1254793 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other upstream 1256467 33604148 ~ 33610893 (-) True LOC110496048

Expression Profile