RNA id: XM_036952514.1


Basic Information

Item Value
RNA id XM_036952514.1
length 2672
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC110496028
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32352055 ~ 32361876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATATGGTGAATGTGGTATGCCACAAGTGTGGTACGCGTTCCCTTTGACTAGTGATTCAGAACCACGTGATACGCGACCCTTTCAACCCAGACATGAATATTAGCTAATGTTTTTAATACGCATTCATAAATGACTGCGCAGCAGAACCGTTTTAGAAGAATGCTGATCCTGGGTTTCCATGGTTGCTAGTTCAATTGCGGTGCGTCCTTTGAACTTGAGTGGCCAGAAAAATGGCATTTAGCAAACTAACGTTAGCTCATTTTAACTTTTGACAAAGAAAATAACAATTTGAAAATACTGAAACGAGTTCCTACCTGGTGTATCTACCACTTATGTCATATTTTGAGACATTCTCGGACATGGCTATGAAGACTCGCCGGTCAGGCGACCAGGCCCAGTTTTGCCCTGAAAGTGACGAGGAATTGTTCAACTCAACCAAAGACATCCCAAATGATGGAAAGGGTAAACGCGTTGCATTTGCTCTTCATGTCAACAAACGACAAGCACGAAAATGTGTTTCTCTCTGCGTTTTGCAAACCGAAGATGGCGTTTCTGACGGGTCTGACTCTGCTTTTATTCGAGATAAAGTAGGCATAACTGTGCGGTATTTTATGAACATTGGAATCACAGTCATTATTGCTGTCTTGGCTGGACTTCTACATTGGGCTCATCTAACAAACCTCTTTGAAAATGACAAACATTTTTCACACCTATCTTCGATTGAAAAAGAAATGGCTTTCCGCACTGAAATGGGTCTGTATTATTCCTATTTCAAGATCTTCATCAACGCGCCATCCTTTTTGCATGGTCTCCACTTGATCATGAATGACAGGTTCTCTGAGTATCCTCTTGTTATCAATGCTCTGAAGAGGTTCAATCTGTACCCAGAGGTTTTCCTTGGCAGCCTGTTCAGGATTTACACTGGCATCATGGACTTCTTTGGAATCCCCACCAAGGCATGTTGGAATGTCAACAGAGCAGATGGACTGAATCCAGTAGAGAGCTGTGAAGGCATGGGGGATGCAGCCTACTTCTATGTCTCCTGTGTCTTCCTGCTTAATGGGGTAATGATGAGCCTGTTCTACATCTACGGGACTTACCTAAGTGGCAGTCGTCTTGGAGGGGTCGTCACTGTCCTGTGTCTCTTCTTCAACCATGGAGAGAGCACTCGGGTCATGTGGACTCCACCGCTGAGGGAGAGCTTCTCCTATCCCTTCTTTGTCCTGCAGATGCTGCTGTTAACACGCATTCTCAGGCGTTCCAAACTTGAAAGAAGATCCCTAGTAGCTCTTGGTGCTTGCAATGTGTTGTTCCTTCTTCCTTGGCCATTTGCCCAGTTTGTTTTGCTAACTCAGATTGCATGCCTGTTTGCATGTTATTTTATGGGCTATCTCTCCACTTCCAAGATGAAATCACTACTTGTTGTGCATTTGGCTTCATTTGCCATCTGCTTTGTCATGCTGTTTGGGAAATTGGAACTTTTGACATCTTTTTACATTTCTTCCCTGGTTGCTGGCTGGGCCATCATCGCACTGAGAGACGATATCACAAGAGTCTGCAAACTTGGAATCGTCACAATTTTTGTTCAAGGTATTGCCTGGTTTACCTCCACTGTGCTTCTCAAATTCTTCATTTCGTTCATCCTCGGAGCGTCCAATGATGCTCACATTGGCAACTTGATCAGATCCAAGTTGACCAACTACAAGGATTTCCACACGTTGATGTACACCTGTGCTGCAGAGTTCGACTTTATTGAGCTGGAGACTTTGTTGGGATACGTTAAGACATTGATACTCCCGGTAAACATAGTTATTGTAGCCATCATTTCTGGAAAGGCAATTAAAGAAGTCTGGAGATCTCTTAGGCGCGAAAGAGTTGACTCTAAAGAAGACGTCGATATTGACACTGAGCAGATGGCACAGTTTGCTAATGGGGAGaTGGTGTACCATAGTCTGCAGCTGGTGGCCTTTGCCGTGCTGGCGATCTTGGTCATGAGAATCAAACTCTTCCTAGCCCCGCTGATGTGCCTCATGGCCTCCCTGATCTGCTCTAGACAGTTGTTTGGCTGGATAGGGGAGCACTTCAAGTCCCACATCACTGTGTTTGGCATCCTGTCCATCATGGCCATCCAGGGCGTGGCCAACTTCCAGAGCCAGCGAGGAATCGTAGGAGACTTCAGCAACCTGCCTCAGGAGCAGCTCCTGGAGTGGATCAATGCCAACACCATGCCCAATGCTGTGTTTGCTGGCTCCATGCCAACCATGGCGAGTGTGAAACTGTCCACTGGTAGAGCCGTCGTGAATCATCCCCACTACGAGGACACTTGGCAGAAGGAAAGAACCAAGTTGGTGTACACCATGTACAGCCGTAAACCGGCCAAGGAGGTGAAGAGGAATCTGATGCAGCTGCAGGCAGACTATTTCATCCTGGAGGACTCCTGGTGTAACCGACGCTCCAGGCCAGGCTGCAGCATGCCTGAGATCTGGGACGTGGAGGATCAGGAGAACAGAGGAAAGTTGCCGCTATGTACCCTCCTATCCATCGACTCCCGACCTCACTTCACCACAATGTTCGAGAATAAAGTCTACAAGGTGCTGAAAATCCCCAAAGATGCCAAATAGGACCTTTTAATATAGGGACATCATTTtgattaaacatgttcaatttcaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1761372 lncRNA upstream 101638 32250187 ~ 32250417 (+) True G1538974
TU1760742 lncRNA upstream 271329 32080249 ~ 32080726 (+) True G1538382
TU1760692 lncRNA upstream 272725 32025784 ~ 32079330 (+) True G1538336
TU1760698 lncRNA upstream 359987 31991022 ~ 31992068 (+) True G1538342
TU1760676 lncRNA upstream 369021 31982609 ~ 31983034 (+) True G1538326
TU1761699 lncRNA downstream 144133 32506009 ~ 32506227 (+) True G1539280
TU1761729 lncRNA downstream 169214 32531090 ~ 32531297 (+) True G1539310
TU1761730 lncRNA downstream 170945 32532821 ~ 32533074 (+) True G1539311
TU1761744 lncRNA downstream 182435 32544311 ~ 32544531 (+) True G1539325
TU1761748 lncRNA downstream 186072 32547948 ~ 32548190 (+) True G1539329
XM_021571654.2 mRNA upstream 256 32341709 ~ 32351799 (+) False LOC110496027
XM_036952513.1 mRNA upstream 256 32341730 ~ 32351799 (+) False LOC110496027
XM_021571653.2 mRNA upstream 256 32341732 ~ 32351799 (+) True LOC110496027
XR_005037431.1 mRNA upstream 287243 32058052 ~ 32064812 (+) True LOC118941132
XM_021571646.2 mRNA upstream 332026 32011959 ~ 32020029 (+) True LOC110496023
XR_005037433.1 mRNA downstream 212080 32573956 ~ 32659559 (+) False LOC118941135
XM_036952519.1 mRNA downstream 358473 32720349 ~ 32959058 (+) False LOC110496032
XM_036952520.1 mRNA downstream 358473 32720349 ~ 32959058 (+) False LOC110496032
XM_021571664.2 mRNA downstream 632658 32994534 ~ 33050381 (+) False LOC110496033
XM_021571663.2 mRNA downstream 667415 33029291 ~ 33050381 (+) True LOC110496033
TU1760548 other upstream 597864 31753710 ~ 31754191 (+) True G1538208
TU1760346 other upstream 771735 31578167 ~ 31580320 (+) True LOC110496008
TU1760344 other upstream 779816 31568891 ~ 31572239 (+) True LOC110496006
TU1759494 other upstream 1524009 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 2054709 30297131 ~ 30297346 (+) True G1536720
TU1762072 other downstream 658352 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 697114 33058990 ~ 33059857 (+) True G1539671
TU1762993 other downstream 1093684 33455560 ~ 33458424 (+) False LOC110496797
TU1763041 other downstream 1127461 33489337 ~ 33491121 (+) True G1540551
TU1763040 other downstream 1173400 33535276 ~ 33537564 (+) True LOC110496043

Expression Profile