RNA id: XM_021571661.2


Basic Information

Item Value
RNA id XM_021571661.2
length 4059
RNA type mRNA
GC content 0.55
exon number 26
gene id LOC110496030
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32365592 ~ 32417823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGTGCTCTGCTCTCTCACTCCGTATAATCACAGGCGAGCCGGCAAGAGCAGCCCAGTATTCCAGTGTCTCAGTTGGAGCTCAGACACACACAAGTCCACATACAcgctcatagaaacacacacacgggAGATAAGAGAGAAGAAGCCAGCTAACGCCACAGCTGCCTCGGCTGCCACTGATGTTTTAGCCCAGATGGCGGGGAACTGTGAAGGGGAGCATGTGCTGACGGGTCTGGACGAGGAGGCCATCATTGACCTCGGGAAGACCAgctccaccaccaacaccaacTATGAGACGGAAGACCTGGAGAGCCACAGGGCGGTCTATGTCGGGGTCCATGTGCCGCTGGGCCGGGAGAACAAACGCAGGCACCATGGCAGAGGCCACAAACACCACCGCAAGAGGAGGGAGCGGGAGGAGGACCGCGAGGAGGAGGACCCCACTTATGACACACCCTCCCAGCGGGTGCAGTTCATCCTGGGTACAGAGGATGATGATGTGGAGCACGTCCCCCATGACATTTTCACCGAGTTGGACGAGCTGTCTTTCAGGGACGGGAGCGCCACTGAGTGGAAGGAGACCGCCAGgtgGTTGAAGTTTGAGGAGGACGTGGAAGATGGAGGGGAGCGTTGGAGCAAGCCCTATGTGGCCACCCTGTCTCTACACAGCCTGTTTGAGCTGAGGAGCTGCATCCTCAACGGCACCGTCATGCTGGACATGAGGGCCACCTGTATCGAGGAGATTGCAGACATGTTGATTGACAGCATGGTGGCGTCTGGCCAGCTGAAGGAGGAGCTGCGTCAGAAGGTGCGTGAGGCCATGTTGAAGAGACACCACCACCAGAACGAGAGGAAGCTCAGCAACCGCATACCGCTGGTGCGATCAATCGCAGACATAGGCAAGAAACATTCAGACCCGTTCTTGCTTGAGAGAAATGGGCCACTGATATCCACACACTCTGTCCCCAGTAACCTGGATAGCAGCAGCAAGGCCGGAGACAGGAGGCCCTCCAAAGTTGGGGTGGACATGAACTTCATGAAGAAGATTCCTCCGGGCGCTGAGGCGTCCAACGTGCTGGTAGGTGAGGTGGACTTCCTGGAGAAGCCCATCATCGCCTTTGTACGCCTGTCTCCCGCCGTCCTCATCACAGGGCTCACGGAGGTGCCCGTGCCCACCAGATTTCTGTTCCTGCTACTGGGTCCACACGGGAAAGGCCCTCAGTACCATGAGATTGGCAGATCCATGGCCACACTGATGACAGATGAGatattccatgatGTAGCGTACAAAGCCAAAGACCGGACGGACCTGCTGTCTGGGATAGATGAATTTCTGGACCAGGTGACAGTTCTGCCCCCAGGAGAATGGGACCCCACGATACGAATCGAACCCCCCAAGAACGTCCCATCGCAGATGAAGAGGAAGATACCCTCCCAGCCCAATGGGTTGGCCTCACCCTCTGGGGAGATGTTGGAGGAGGATGAAGGCCACGGAGCTGGGCCCGAGCTGCAGAGAACCGGACGGATCTTTGGAGGCCTGGTGATGGATATAAAGCGGAAGGCCCCGTTCTACTGGAGCGACATCCGGGACTCGTTGAACCTGCAGTGTCTGGCCTCCATCCTGTTCCTCTACTGCGCCTGCATGTCCCCTGTCATCACCTTCGGAGGGCTGCTGGGCGAGGCCACAAAGGGCAACATAAGTGCCATAGAGTCTCTGTTTGGGGCGTCCCTCACAGGAGTGGCTTTCTCTCTGTTTGCGGGGCAGCCCCTCACTATCCTGGGAAGCACGGGGCCTGTCCTGGTTTTCGAGAAGATCCTCTTTAAGTTCTGCAAGGACTACGGCCTGTCCTACCTGTCTCTGAGGACCAGCATCGGCCTGTGGACGGCCTTCCTCTGCCTGGTCCTGGTGGCCACAGACGCTAGCTCCCTGGTCTGTTACATCACCCGCTTCACAGAGGAGGCCTTCGCCGCGCTCATCTGCATCATCTTCATCTACGAGGCCCTGGAGAAGCTCTTCCAGCTCGGGGAACACTACCCCGTCAACATGCACAACGAGCTGGACAACCTCACACTCTACTCGTGTCAGTGTTCTTCACCGGCCAACGCCTCCGCTCAGATCTTGCAGACGTGGAaccagacagaacacacaccagacTCTATCTCCTGGAACAGCCTCAACGTATCGATGTGTAACCTGCTCCATGGAGAGTTTGCTGGTCCTGCCTGTGGTCACCACGGCCCCTACATCCCAGATGTCCTTTTCTGGTCCATCATCCTCTTTTTCAccaccttcttcctctcctcttttctcaaGGAGATCAAGACCGAGCGATACTTCCCTACAAAGGTGCGCTCCACCATCAGTGACTTTGCCGTGTTTCTGACCATTATGATCATGGTGCTGGTGGACTATCTAATGGGCATCCCCTCTCCTAAACTCAACGTACCCGACCGCTTTGAGCCTACATCCAAGCATCGCGGCTGGCTGATCTCCCCGCTGGGCCCCAACCCCTGGTGGACCCTGCTGGTGGCGGCGCTGCCCGCTCTGCTCTGCACCATCCTCATCTTCATGGACCAGCAGATCACCGCCGTCATCATCAACCGCAAGGAGCACAAGCTCAAAAAAGGCTGTGGCTACCATCTGGACCTGCTGGTGGTGGCGGTAATGCTGGGGGTTTGCTCCATCATGGGCCTGCCCTGGTTCGTAGCCGCCACCGTGCTCTCCATCTCCCACGTCAACAGCCTCAAGGTGGAGTCGGGCTGCTCGGCCCCAGGAGAACAGCCCAAGTTCCTGGGCATCAGAGAGCAGAGAGTCACCGGCTTcatgatctttgtcctcatgggcTGCTCTGTCTTCATGACCTCCGCACTCAAGTTCATTCCTATGCCAGTGCTATACGGAGTCTTCCTCTACATGGGAGTCTCTTCACTCAAAGGCATTCAATTCTTTGACCGTATCAAGTTGTTTGGTATGCCAGCCAAGCACCAGCCTGACCTGATCTACCTGCGCTACGTTCCCCTGTGGAAGGTCCATGTATTCACCCTGGTGCAGCTCACCTGCCTCATACTGCTGTGGGTCATCAAGGCCTCGGCAGCTGCCGTCGTATTCCCAATGATGGTGCTGGCCCTCGTCTTCATTCGGAAGCTTCTCGACTTTTTCTTTACCAAGAGGGAGCTCAGCTATCTGGACGACTTGATGCCCGAGagcaagaagaagaaagaggatgACAAGAAGAAGAAGGAGCGGGAGAAACGGGAGGCCCAGGCTTTATTGCTCATAGAAGAACAGGTGGGCGTGAATGCTGTGAAGGTCCATTATGACGGTGGGAACCTGCTCAAGATCCCAGTCAAAACTCTCTCAGGGAGCTCATGTGACCTCGGCAATGTTAATATCTCTGAGGAAATGGCCAAAAGCGGGGCATGCAAAGCAGTGGCGATGAGCGCCGACTTCGGCCCATCTATGAAGCGTAGCCGAAGCCAGGAGAAAGTGGCCTGTGTTAGAGTCAATATGGACACCACCGAGGCAGGAGGGCAGAGTTCAGCCTTGGAGACGGCCTTGTGATTGAGGAGACCTTTGTCCTACCACCCTCTAACCCCACAGAGGGCCACTCTGTTACAGTGAGCAAGGTGAGAGGGTGAGCTAGACCTGGAGCAGATAAGTCAGACTGGTCTCTGGAGAAGCCCCTTTTGTGCGTCTCCTCGGTCAACAGTTGAGCTCCAGTTACCTCCAGTGGTCCAGTGTAGCTCTGGGGATCCCGAGGCCCCCTCAGCACACAGAGGACTAACTTCCTTGCAGTGGAGAGCACATTACTAGGATATAAATGAACCAGACTGACACTGCCCACCGACCCCCACCATTTTGGGTCAAACTCCAATGTGAACCAATTATTTCCCACCCATTGCCACAGCTGCCAAAAGATGGGGCCACCACTGCCACACTGATGCGGAATCTTCTTCGATTGTCATGTATGCGTGAATTTActtcattttaaaatgtatattttctcaTCAAAATTTGAAGCGatattttgtaaaaaataaatacattaagaTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1761370 lncRNA downstream 116512 32248558 ~ 32249080 (-) True G1538972
TU1761245 lncRNA downstream 201328 32163946 ~ 32164264 (-) True G1538852
TU1761216 lncRNA downstream 225770 32139486 ~ 32139822 (-) True G1538824
TU1761214 lncRNA downstream 226514 32138866 ~ 32139078 (-) True G1538822
TU1761202 lncRNA downstream 234560 32130754 ~ 32131032 (-) True G1538810
TU1761675 lncRNA upstream 58175 32475993 ~ 32476237 (-) True G1539256
TU1761696 lncRNA upstream 84259 32502077 ~ 32502335 (-) True G1539277
TU1761700 lncRNA upstream 88478 32506296 ~ 32506516 (-) True G1539281
TU1761707 lncRNA upstream 100132 32517950 ~ 32518151 (-) True G1539288
TU1761714 lncRNA upstream 100860 32518678 ~ 32524682 (-) True G1539295
XR_005037432.1 mRNA downstream 17911 32336621 ~ 32347681 (-) True LOC118941133
XR_005037328.1 mRNA downstream 192166 32172548 ~ 32173426 (-) True LOC118941048
XM_021571652.2 mRNA downstream 250790 32087227 ~ 32114802 (-) True LOC110496026
XM_021571651.2 mRNA downstream 306773 32057280 ~ 32058819 (-) False atp5if1a
XM_036952512.1 mRNA downstream 307330 32057280 ~ 32058262 (-) False atp5if1a
NM_001281418.2 mRNA upstream 32183 32450001 ~ 32454383 (-) True eomesa
XM_036952521.1 mRNA upstream 754608 33172426 ~ 33309331 (-) False LOC110496796
XR_005037434.1 mRNA upstream 754608 33172426 ~ 33309331 (-) True LOC110496796
XM_021571669.2 mRNA upstream 948869 33366687 ~ 33379507 (-) False LOC110496036
XM_021571670.2 mRNA upstream 948869 33366687 ~ 33379508 (-) False LOC110496036
TU1761118 other downstream 306807 32057311 ~ 32058785 (-) True atp5if1a
TU1760970 other downstream 650411 31714506 ~ 31715181 (-) True G1538595
TU1760868 other downstream 672921 31685752 ~ 31692671 (-) True LOC100136047
TU1760774 other downstream 842136 31516111 ~ 31523456 (-) True LOC110496004
TU1760029 other downstream 1351416 31011878 ~ 31014176 (-) True LOC110495994
TU1761767 other upstream 143908 32561726 ~ 32562120 (-) True G1539348
TU1762604 other upstream 481760 32899578 ~ 32936569 (-) True G1540148
TU1762958 other upstream 973521 33391339 ~ 33391752 (-) True G1540473
TU1763210 other upstream 1184656 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other upstream 1186330 33604148 ~ 33610893 (-) True LOC110496048

Expression Profile