RNA id: XR_005037433.1


Basic Information

Item Value
RNA id XR_005037433.1
length 1354
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC118941135
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32573956 ~ 32659643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATAAGTGGGTTGGTCCCGCACACTAACTCCGGCTCCATGGGAACCGGGACTTTTTGACGAAGAGCTCGGTTGAACCTCAAAGAGGAGGAAGATTTGTGACAGCGCACAAGGAAGGACACGGCTGCTCGTTACACGACAGTTCGTGTGGGTAGACCGTGCGTATCGGCAGTGTGGCGAACCGAACCGCAGCCTCTTCTACAGTTGTTTTTTTGACGGAGAATTTATCATACTCACCTCTACTCAATGAACCTACATTGAGCTTATTATTTTGTTGTGGTTTTCGGCGTCAAAGCGACAGAGATGTAAAGCAAGTTAGCCAGCACTACTCCATCTTCCTCTTCATTTGATATGCAAGCTACTGACATAACCAGGGGCGCTGAAGTGACAGAGTGCAGCGGAAAATGGACATCCGGAGTGGCATACAAAAGGCAGTGGagcccctccctacctctctcccctcctcccctcaacagccggAGGACAGCCAGGCAGAGCGGAGCGCCAGGCCCACCGCTGACAACCACAGCAAGGACACCCAGCCAGCCGCCGGCCACCGAGACGACAAAAAATATTTCAGTGTGGAGTCGATTAATGGGACTATGTTTCATGAAGCCACTAGAAGACTGTTGCTGACTGAGAGGAGGGGCTGTCAGGAGAAACAGTTTCACATCCAAGGCTACAGATGGAGAGACGGGAGAAGTTCGTCATAAGGTGGCTGCAGCTTGCACCAGACAGAGACGGACGCAGGAAGGAGAGGACCTAACACAGCAAGGAAAGGGCAGATAGACCCCGAGAGAAATAGATACATTGACATACACGCAGACATACATGGGATAAAGGGAGGAACACTGACTCTTTGTACATTATCTGGAAATAATGGACGACTTGGTACTGCCCGAGTTTATTAGTTCCAAGTAATGTACAGAGCAGAGGCGTTTATCCCGCTTATTCCACGGTTGCCAAAGAAAACAAGACCACATTTACTGGTAAAAATGTACATGTTTTCTTTGAGATTAGAATTTTGATAAGTAAATTCATGCTATTTCATCCTTCCAGTTGTGCTATCGGTTCAGTTGATAGAGAAGCGGACTTGTTGTTCATTCTATTAATTTGATTGCTATGCAggctggcaatgttcttatcccttaCTTGCTAGTTGGCCAACTATGGCTAACCCAGTCGCTTCAACTATGCACAGAATAACATCAAAGTAGCTGCATTTTGCGTTTttttttaagctgttttctagtgacatttatttggatatgTCCATGCTACTGTACATATGTAGTACTTGTTGAGGGATGACACGCACACAAAAGTAAATTTcatatatttaaataaaaaaggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1761766 lncRNA upstream 12146 32561516 ~ 32561810 (+) True G1539347
TU1761748 lncRNA upstream 25766 32547948 ~ 32548190 (+) True G1539329
TU1761744 lncRNA upstream 29425 32544311 ~ 32544531 (+) True G1539325
TU1761730 lncRNA upstream 40882 32532821 ~ 32533074 (+) True G1539311
TU1761729 lncRNA upstream 42659 32531090 ~ 32531297 (+) True G1539310
TU1761863 lncRNA downstream 34768 32694327 ~ 32694635 (+) True G1539438
TU1762013 lncRNA downstream 249523 32909082 ~ 32909627 (+) True G1539583
TU1761853 lncRNA downstream 299181 32958740 ~ 32959429 (+) False LOC110496032
TU1761854 lncRNA downstream 302391 32961950 ~ 32964969 (+) False LOC110496032
TU1761851 lncRNA downstream 303571 32963130 ~ 32964969 (+) False LOC110496032
XM_036952514.1 mRNA upstream 212080 32352055 ~ 32361876 (+) True LOC110496028
XM_021571655.2 mRNA upstream 212082 32352055 ~ 32361874 (+) False LOC110496028
XM_021571654.2 mRNA upstream 222157 32341709 ~ 32351799 (+) False LOC110496027
XM_036952513.1 mRNA upstream 222157 32341730 ~ 32351799 (+) False LOC110496027
XM_021571653.2 mRNA upstream 222157 32341732 ~ 32351799 (+) True LOC110496027
XM_036952519.1 mRNA downstream 60790 32720349 ~ 32959058 (+) False LOC110496032
XM_036952520.1 mRNA downstream 60790 32720349 ~ 32959058 (+) False LOC110496032
XM_021571664.2 mRNA downstream 334975 32994534 ~ 33050381 (+) False LOC110496033
XM_021571663.2 mRNA downstream 369732 33029291 ~ 33050381 (+) True LOC110496033
XM_021571666.2 mRNA downstream 427042 33086601 ~ 33172114 (+) False LOC110496034
TU1760548 other upstream 819765 31753710 ~ 31754191 (+) True G1538208
TU1760346 other upstream 993636 31578167 ~ 31580320 (+) True LOC110496008
TU1760344 other upstream 1001717 31568891 ~ 31572239 (+) True LOC110496006
TU1759494 other upstream 1745910 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 2276610 30297131 ~ 30297346 (+) True G1536720
TU1762072 other downstream 360669 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 399431 33058990 ~ 33059857 (+) True G1539671
TU1762993 other downstream 796001 33455560 ~ 33458424 (+) False LOC110496797
TU1763041 other downstream 829778 33489337 ~ 33491121 (+) True G1540551
TU1763040 other downstream 875717 33535276 ~ 33537564 (+) True LOC110496043

Expression Profile