RNA id: XM_036952520.1


Basic Information

Item Value
RNA id XM_036952520.1
length 3100
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110496032
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 32720349 ~ 32964969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagaggcaggctgctGGGAGGAGTGACTGAGAGCGAAGCAGGCAAGAAGAAACAAGGAACACATTTTAGAAGAGCAGGAAAAGGGAGGATcgcagacaggagactctctggATTGTCTGTCTGTTGGGCACCTGGGACACTGTCATTGTGCTTCTcattatatttttttctctcttttcctctgaACCAGTGGACCGGTGGAGATTCCTTTTTTTCTTGGTGCCATATCAATTAGGAGCTGGGATTGTTTCTGTGTAATCTGCTTTTCTCTGGCTGAACTGTTACACACTGAGATTGCTCCTGCCTGATACTGACTCTTCCCAAAGTGTATCTGTTAGCACGCCGCTGAGGATATATCCTGTGTCCGACAGTACAACACAGAGCAGCTGGGATATCagactacagaggagagagagaaagagagagagagagagagagctgtgagagaGAGCAGCCGATTGAGCGACAGAGTGTGAGAGAGGTTGAAGCCGAGGAGCGAGCCAGTGAGGGACAGACAGGACACGCAGCAGCTTCCGTTTGTAACACTCCAGGAGATTTAACTAAAAGGCGTCGTCAGGCAGGATCTACCCCCACAGAGGCAACCCCTCTCCCCAGCCACTCTCTGTCAGACGAACCCTGCCTGCTCCGGAGGACCAGCAGTGATACAAGACACCAGTGTGGACGGGGGAAAAAAAGGGACCTACAGTCAGAGAGCCAAGCCCCAGTACTACTACCGCTCGTCCTCCGCCTCCGCGCAACCATTCCCTGCCACGGCGCTAAGGATTCCAGCTACATGGGCAAGCGATTGGAACAGCAACCAATGTACCCTCAGTACACAtactactacccccactacctcCAGACCAAGCAGCCCTAtgctccacccctccaccccatgGCTCCGCCCAGCCCCAGCCACAACAGCTGCAGTCACGGCGGATCCGAGCTGCTGAGTAAAACTAACCTGTACATTCGAGGCCTGCCCCCGGGGACCACGGACCAGGATCTCATCAAGCTCTGCCAACCATATGGAAAAATTGTGTCAACCAAGGCGATCCTGGACAAGAACACCAACCAGTGCAAAGgaTATGGCTTCGTGGACTTTGATAGCCCAGCTGCAGCACAAAAGGCGGTGTCGTCTCTCAAAGCCACCGGGGTGCAGGCTCAAATGGCTAAGCAACAGGAGCAGGACCCCACCAACCTGTACATCTCCAACCTGCCGGTATCCATGGATGAGCAGGAGCTGGAGAACATGCTGAAGCCGTTCGGTCACGTCATCTCCACGCGCATCCTGAGGGACGCCAACGGGGTCAGCAGAGGGGTTGGCTTCGCCAGGATGGAGTCGACGGAGAAATGTGAAGTGGTGATACAGCATTTCAATGGGAAATACCTGAAAACCCCACCAGGCATTCCAGccccCAATGAGCCTTTACTGTGCAAATTCGCTGATGGAGGGCAGAAGAAACGCCAGAGCCAGAGCAAGTACCCGCAGAACGGGCGGCCATGGCACAGGGAAGGCGAGACTGGTATGCAGTTAACATATGATCCTGCTGCTATGCAGAACGGgtTCTACTCCTCGCCTTACAGTATCGCCACCAACCGCATGATCGCACAGACATCCATTACGCCCTTCATCGCTGCTTCCCCCGTCTCCACATATCAGGTCCAGAGTACGTCATGGATGCCTCATCAACAATACGTTATGCAACCTACAggTGCAGTGATCACCCCAGCCATGGACCACACCATGTCAATGCAGCCTGCCAACATGATGGGCCCGCTCTCCCAGCAGATGAACCATCTGTCCCTGGGCACTACAGGAAGTTACATGACTGCTGCGGCTGCCGGGGCGTCTATGCAAGGGACCTACATTCCTCAGTACACGCCTGTGCCTCAGACAGCCGTCCCCGTTGAAGGAGTGGTCACGGATGCCTCTCCTCAGTCAGTGGCCCCCTCGTCGCATGACGTGAGTGGGCAGCAGCATCAGATCCAGGTGGACGGGCCCAGCGACCATGTTGCTTACTCATACCAGTCCAAATAGCGACAGACGAGGAGAATATTCCTGTGACAGTGTTGCCTTGAGACAGGGGGGTTGGCTGCACTGAGaatgtggagagaagagagattgCTTCCAGATTGCCCAGGCACCAAAAAAGAGACACTTTTTCATTTCCTACCTGGCCtaagagagttacagagagagaagagagagagagaaagagaggagggtgggttgggggggggggggtgaagtcgCTGGGCACAGTGCAAAGAGTTGAAAATGTTTAGTCTGGCAACCTGCCTGGTGGGCTGGGCTTCAGCTTGACTTACTCaactgaaaaaaataaaacataaataggGAAATGTTCAATGCGCAGGTAGGTAGGTGATGAGTTTTATTTTGTAATTAGAAAAGGGGAAGTCAAAGTTTGAGATACACAGAGATTGTCTTCCTTAGATATTAAGCTATGATTTcttttcactttttttttctcttgttaaATTTGAGTTTTCTAGATATAAATCGAAAATAAGTGTTTTTCTTTCTTGAATCTTCATGGCCTTAATTTTAAGGGCGTCGGATGACTTTTTACAGAGAGTAAAGTCTGGCGTCTCGTTGAAAATAAAAAGCGATCTAAATCAGTCTCTTGGACCACTTTGATGGTACATGATACTGCAGGGGTTGAGCTAGAGACATTAAAACAAAGTCTATCACATAAGCTGTACAGATTTAATAGACAACAGTTTCTTTTTCTTTTCTTCGTTAGAAGAAAACTTTGATAAATCATTATGTCAGAGGTTACTAAATCTAAGAGAAAAAAGTAGATGTCTGCTAAGGAAAAGAGTGGGAAAAGAGAAAAGCTTTCAGGAGATTTTTCACAATGAGGAGGGGGAAAAAAGACACTGCATTGTAGAAAATGCAGTCGGTTGCAAATGCTGAACTTGTttttattatcataattattattttacacGGCGAGATTGCTGTTGATGACATTAGTGCTTTTATCtgctacatttgacattttttttatgaGCTTGATGGTGTTTTTAGCCCGCTTTGCTTGTCAcactataaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1761863 lncRNA upstream 25714 32694327 ~ 32694635 (+) True G1539438
TU1761777 lncRNA upstream 60706 32574090 ~ 32659643 (+) True LOC118941135
TU1761766 lncRNA upstream 158539 32561516 ~ 32561810 (+) True G1539347
TU1761748 lncRNA upstream 172159 32547948 ~ 32548190 (+) True G1539329
TU1761744 lncRNA upstream 175818 32544311 ~ 32544531 (+) True G1539325
TU1761854 lncRNA downstream 2892 32961950 ~ 32964969 (+) False LOC110496032
TU1761851 lncRNA downstream 4072 32963130 ~ 32964969 (+) False LOC110496032
TU1761852 lncRNA downstream 4072 32963130 ~ 32964831 (+) True LOC110496032
TU1762052 lncRNA downstream 11402 32970460 ~ 32970810 (+) True G1539622
TU1762065 lncRNA downstream 47719 33006777 ~ 33006977 (+) True G1539634
XR_005037433.1 mRNA upstream 60790 32573956 ~ 32659559 (+) False LOC118941135
XM_036952514.1 mRNA upstream 358473 32352055 ~ 32361876 (+) True LOC110496028
XM_021571655.2 mRNA upstream 358475 32352055 ~ 32361874 (+) False LOC110496028
XM_036952513.1 mRNA upstream 368550 32341730 ~ 32351799 (+) False LOC110496027
XM_021571664.2 mRNA downstream 35476 32994534 ~ 33050381 (+) False LOC110496033
XM_021571663.2 mRNA downstream 70233 33029291 ~ 33050381 (+) True LOC110496033
XM_021571666.2 mRNA downstream 127543 33086601 ~ 33172114 (+) False LOC110496034
XM_021571665.2 mRNA downstream 127804 33086862 ~ 33172114 (+) True LOC110496034
XM_021571667.2 mRNA downstream 393737 33352795 ~ 33356691 (+) False LOC110496035
TU1760548 other upstream 966158 31753710 ~ 31754191 (+) True G1538208
TU1760346 other upstream 1140029 31578167 ~ 31580320 (+) True LOC110496008
TU1760344 other upstream 1148110 31568891 ~ 31572239 (+) True LOC110496006
TU1759494 other upstream 1892303 30822508 ~ 30828046 (+) True G1537251
TU1758887 other upstream 2423003 30297131 ~ 30297346 (+) True G1536720
TU1762072 other downstream 61170 33020228 ~ 33020544 (+) True G1539641
TU1762103 other downstream 99932 33058990 ~ 33059857 (+) True G1539671
TU1762993 other downstream 496502 33455560 ~ 33458424 (+) False LOC110496797
TU1763041 other downstream 530279 33489337 ~ 33491121 (+) True G1540551
TU1763040 other downstream 576218 33535276 ~ 33537564 (+) True LOC110496043

Expression Profile