RNA id: XM_021571672.2


Basic Information

Item Value
RNA id XM_021571672.2
length 4298
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110496036
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33366687 ~ 33379508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGTTCTTTGGGATTGAGTTTGGGATTGGGTAGGCAAATCTGTTCCTAGATCTGCTTGCAGAGGCAACAAATATACTGGGGCATCTTCAGGTGCTTGGAACGCCAGATAACCTTTGGAGCGCACTGAAGTCTTGCGCATGGAAGGCAGGGCACTTCCTGTTTTTCCTCAGATCTTTTCTTGCTTGCCAGAGAGCGCTTTCTATATTGAGTAATGGGGAAACAGGCATCCACCTACCGAACTAGTAACGTTAGGTCTGCATTTATGGACATTTCCAAATGAATCACAGGAAATATTGAAACGAAGTGGTTTTGTAGTTTAACGATGGACTCGATACGTCAAGCGTGAATAGTGAGACCCAACAAGGGGTACTGCTAACTACCTCCACGCTAGCAAGGATAACCAGCTAGTGAACGTATTTCCTCAACCAGGAAAGAGCAGCATGCGGAGAGAGCTGCATCCGCTCTAGAATGAAGAAGAGCCCGGCGCACCGCTGCAGGGACATCGAGAGGCAAGCCGGTTACCTGCAGCCCGAGCACTGCGCCCCTCCCCCGACCCGCCCCAGTTCCGACGCCATGTGGTTCATCCGCGACTGCTGCGGCATCGCGTGCGGCGTCATCACCTGGTGCCTGGTGTTCTACGCCGAGTTCGTGGTGCTCTTCGTCATGCTGCTGCCCGCCAAGAACCTGCTCTATAGTCTAATCAACGGGGCACTGTTCAGTACCCTCGCCTTCCTCGCTCTGGCTTCGCACGCCCGGGCCATGTGCACAGACCCGGGTGCGGTGCCTAAAGGGAACGCGACCAAGGAGTTTATCGAGAGCCTGCAGCTCAAGCCCGGTCAGGTGGTCTACAAATGTCCCAAGTGCTGCAGTATAAAGCCTGACAGAGCTCACCActgcagTGTGTGTAAACGCTGTATCAAGAAGATGGACCACCATTGCCCATGGGTAAACAACTGCGTAGGAGAGAAGAACCAGAAATTCTTTGTGCTTTTCACAATGTACATTGCACTGATATCCCTCCATGCCCTGGTCATGGTTGCCTTCCATTTTATCTTCTGCTTCGAGTCAGACTGGACGAAGTGCAGTACATTCTCTCCTCCTGCGACCGtcatcctcctcatcttcctctgctTTGAGGGACTCCTCTTCCTCATTTTCACCTCAGTGATGTTTGGGACCCAGGTCCATTCCATCTGTACCGATGAGACGGGCATAGAGCAGTTgaaaaaggaggagagaagatgggTTAAAAGGACAAAGTGGATGAACATGAGGGTGGTATTTGGCCATCCGTTCTCCATAGCCTGGCTAAGTCCCTTTGCAACCCCCGACCACGGGAAGGCAGACTATTACCAGTACGTTGTCTGAGAAGAAGAAGCCAAGCTCCAGCACCCGTGCTACCAGCCTGTCTTTCAGGGTGCGGACTGATGATGCGTACAGGCGAAGGTGTTCCCACCGCCTGACTTCACTGAGCATTAACTCTTGACACTTCTTCTCCTTTTCTGTTTTTGATCATTTTTAAATTTCAGGGTCTTCTTCGTGAAAAACCTCTTTCTGCCTGTTTTTAATACTTGTCACTTATTTTAGTTTTCTTTGCCTGGTGCTGATTTTGATACCTGTATGAAAAACAAGTTATTTCCCCTTCTGTTCACAATCACAGCCAAGCCCTGCAAAACCATCAACTGTAAAATTAGTCTCTGCTTCTCTCACGTTTAACATGAAAGAGAGCACTTACTGATGTAACCTAGCCAGAGACTGAATCTGACGTGGCTATAAACTAGGCTCTACCTTCGGGATAGAAAGGGTAGACACTCTTAAACCCAACGTACAGTATTTCCTGTATTTGTTCATGTCCCGTTTTGAGGACTAGGCCTAAACAAAGCAAACGCATGACCTGAACTCAGATGGGCTTTTCAGTGGACAAAAACAATCAGTTCCAATAGGCATATTTTCTCTTCCAATGTTGCAGTACCTCAGCCTTTCCATAAAGTATCCTTTATGGGTATAAGCTATAGCCTTTGGTGCCAGCGCCACGCTGTTGATGTACTACCGACCCACAAGGCATTACATTTGCTGTTTAGAACAGCCAAATCTGTTGCTGCAAGCTGCAGAGTCTTTGCCTTATAGGCATGCGTGGCTGCTCACCTCCTGCAGGACTGCCGCACAGAAGAAATGCCAGGCCGCGCAGACTCCAGAGGTTGAACTTCACCGAGTTCACCCCATTAGGTTGCACTACATAGATCAACGTTTTTTCTGTGATCCAatcaacattataaactgggatgttcgagccctgaatgctgattagctgacagctatatcagactgtataccacgggtttgacaaaacatgtatttttactgctctaattacattggtaaccagtttataatagaaataaggcaccacaggggtttgtggtatatgaccaatacaccaccgctaagggctgtatccaggcactccacgttgcgtcgtgcataaaaACAGCccgtagccgtggtatattggccatataccacaccccctcgcgccttattgcttaattatatcaGCCCCTTTAAGCTGGTTTTGAAAAACTAGTCAGGTAAaaagcatgtgtgttttaattaaaggggcagtgttgtattttgagacggcCTTGAATATGGAAAtgagccaataggcagaggggtaGTCTTCATTGTCTAATTCTCTGAATGATAATAATTAATTATTTgaaaagtggtttcttgcatcatacaATGCAATGTACCTATTTGGCCCATGGTGTTACAGACCAAGTAAAAAGTCATTAATTAATGTCAAacccttcataatgtaaaaaTGTTTAAAGGTATCATGCAATGTAGGcctgcattgaacaccacatactgtaggctatatcataGAAATTGCTTTTGATTTCTATCtgaaaatgttatgggatttgctccattggttttgttggtagGACTACATTATGCTCAAATAGCCACAATAGCCTATTGGTTACTGTCTAAAACTAAGGGTTCCACCTCAGTTTTCACTGTAATCGCGTGTCGGAACTTGCACAGAATTCTCACAACGTTCAAGTTTCCGCTCACAACACCTCAAATTTGCTCAGCcccgtacccccccccccccccccccctacttatAGGACAGTACACAATGGCAGTTGGGTAAAGATATTTTTGTAGCTCTGTAACCTTAAGTTTCAGTTGAATAGGGTATCTGCTTCCTCTCACAAGCTGTCAGTCATGTCCATGTGCAGGATGGGTCCCCTCCGAAGGCTGGTGACAGTGGTGGATGGTTGTCTGTTGTAAGCATGATATGTCTTACTGGCTGGTGTATGTGACAACTGTTTCTATAGAAAAAGTACTGTAATGCCCTCTGAGATTTTCATTTGATCACTGAATCACTGAATACAACTGGTAAATCAAATGTACATAATATTTAACGTTTTGGAACAGAAGCCTGCAGCTATGTGTAATTCCCCTGTGTTCACTAAATGGAATTTGTTAAATGTCATATCAAAACAGGCTATCGGCTTGACATTTGTGGGTATGAATCTGACCGAGCTAAGCTTTGCGGGACAAACATTGGTGATGACATTTAGGCCACTGAAACGTGCACTGAAACCCGAAAGAACATTGTGGACCATGCTAACTAGTTCACACATTATGTAAAGGCACAGACCGGTCTCCTAGAGACAGTCTAGATTGGCTCTAGGCCAATTGCAAACAAACAAGCTTAATATTCAAAGCAGATACTTCAGTGAAAATGCCTTTGTCTGTGAGAAAATGATCACACAATCAATCGTGTGTTCAGAAGCCTTACTATAGAAAGAGTATTTGCTGTTGGTGATGAACGGaatggctacatcccaaatggggCTCTTCCcacagggctctagtcaaaagttgtgtagggaatagagtgccatttggggcacagcCTAACTCATGTAGAATATTTTTGGTGCCATATGTTCTGGTTTATGAATGAGGAATCTCTGAACTCTTTCACCCTCCCTGCATATCATTTTGTACAGCTTATGGTAGAATGTACCATTGAGGCCACAGGGGAAACTTTCAGAAACATACGCCTTTTATGAAAATGCATTTTTACAGACTGTCAAAGCCATGCTGAATGAACACAATGGTTATGTATTCATCAAACAAAAATGTTTCTCTCTTAATTGAGAATGCAGAGTGCATTTGCACGGCATGGGTGTCATTTGAAATGTGTATGGACCACATTTtatagattttaaaaaatgtattatgaAGAATAAAATCAACTTTGAAGTCA

Function

GO: NA

KEGG:

id description
K20029 ZDHHC3_7_25; palmitoyltransferase ZDHHC3/7/25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1762925 lncRNA downstream 10025 33352824 ~ 33356662 (-) True G1540456
TU1762779 lncRNA downstream 194594 33170529 ~ 33172093 (-) True G1540320
TU1762774 lncRNA downstream 211594 33154844 ~ 33155093 (-) True G1540316
TU1762712 lncRNA downstream 284037 33082428 ~ 33082650 (-) True G1540254
TU1762697 lncRNA downstream 303041 33063416 ~ 33063646 (-) True G1540239
TU1762950 lncRNA upstream 1157 33380665 ~ 33385589 (-) True G1540466
TU1762957 lncRNA upstream 11481 33390989 ~ 33391236 (-) True G1540472
TU1762961 lncRNA upstream 12393 33391901 ~ 33392302 (-) True G1540475
TU1762985 lncRNA upstream 54296 33433804 ~ 33434235 (-) True G1540499
TU1762986 lncRNA upstream 55282 33434790 ~ 33435085 (-) True G1540500
XM_036952521.1 mRNA downstream 57356 33172426 ~ 33309331 (-) False LOC110496796
XR_005037434.1 mRNA downstream 57356 33172426 ~ 33309331 (-) True LOC110496796
NM_001281418.2 mRNA downstream 912304 32450001 ~ 32454383 (-) True eomesa
XM_036952518.1 mRNA downstream 948864 32365592 ~ 32417823 (-) True LOC110496030
XM_036952516.1 mRNA downstream 948866 32365592 ~ 32417821 (-) False LOC110496030
XM_021571674.2 mRNA upstream 12905 33392413 ~ 33414958 (-) True cdcp1b
XM_021571681.2 mRNA upstream 146633 33526141 ~ 33533677 (-) False LOC110496042
XM_021571680.2 mRNA upstream 146633 33526141 ~ 33533687 (-) True LOC110496042
XM_021571686.2 mRNA upstream 181334 33560842 ~ 33573866 (-) True LOC110496044
XM_021571687.2 mRNA upstream 192506 33572014 ~ 33573707 (-) True LOC110496045
TU1762604 other downstream 430118 32899578 ~ 32936569 (-) True G1540148
TU1761767 other downstream 804567 32561726 ~ 32562120 (-) True G1539348
TU1761118 other downstream 1307902 32057311 ~ 32058785 (-) True atp5if1a
TU1760970 other downstream 1651506 31714506 ~ 31715181 (-) True G1538595
TU1760868 other downstream 1674016 31685752 ~ 31692671 (-) True LOC100136047
TU1762958 other upstream 11831 33391339 ~ 33391752 (-) True G1540473
TU1763210 other upstream 222966 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other upstream 224640 33604148 ~ 33610893 (-) True LOC110496048
TU1763572 other upstream 278133 33657641 ~ 33674231 (-) True LOC110496049
TU1763897 other upstream 782419 34161927 ~ 34162458 (-) True G1541318

Expression Profile