RNA id: XM_021571675.2


Basic Information

Item Value
RNA id XM_021571675.2
length 3219
RNA type mRNA
GC content 0.40
exon number 4
gene id nrm
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33420834 ~ 33426552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTcagtgctatctgggatccttggaaCGGATAGGTAAACGCTATGGCTACGGTTAAActacgtcccaaggatcccgcaTAGCAccgatcagagaggaagaggcgacgCCTCTCGTTCTTTCTGCCTAAATCAGGAAAAAGTCCATATTGAAATGGCGTCAGTCACTGCTCGTGGTATGACCCTTTGCATCTTGGCGCTGTTAAACTTTGTCTTCGTTTTTATAACCGGTGCAGACTTTGTTCGTTTCATCTCATTTCGAGCGATATATCATAACATCACTGGAGAGTCGCCACTGTGTCAAGACTCTGTACCATGGTCTGTAGCTTTGCGGGACAGCTCTGTTCTCAAGTCTGTGGTTGTGGATCTGGGGCTTCTGGCTCTTTTTATTGTCCAGCACAGCCTATTGGCCTGGGCTCCAGTCAAGCAGGCCTGTCAGTCTGTCCTGGGGGTACTGAACCGGGCCATGTACTGCTCCACCACTGCTCTGGctctccagATATTGATGCATTACTGGCAGCCTGTGACGGAGGCTCCCTGTCTGTGGTCAGTACGTAATGCCCCATGGAATACCTGGTTCCCCCTGCTCTGTTTCACCCTGCACTTCCTCTGCTGGTCCATCATCTGCAGTATACTGCTGATCTTTGACTATCCTGAACTACTGGGCATCAAGCAGGTTTATTATGAGTGCCTTGGTTTGGGAGATCCTCTGGCTCTCAAGTCCCCCCGGGCTCAGCGTCTCTTCGCCCACCTGCGTCACCCCGTGTGTGTGGAGCTGGCTGTGGTGCTGTGGCTCCTCCCTGCCCTGCCCCTGGACAGGCTGCTGCTGGCGGGGAGTCTGTCGGCCTACCTGGCCCTGGCTCACTCTCTGGATACACAGGACTGTGCCTACCTCAGTGTCCAGCTGCATAGCAAACTGCGGCTCTTCTCTTTGCCACAGGATGGCACTGCTCAGAACAATGACAACCACAAGCAAGAGTGAATTGAAGTCATGGGTGTTgtaagctaggtttccatccaattgccAAAACATAAGAATATTctaatatgcacattttcccgcCAAAGATGTTTCcgtcaaattgacttgttggggCTTAAATGacttttgcggttaaattccGATGTACAGaatttttgtaattttaaaaaagaaagttaaatgggtttccattgcattttaaACTCTACTGATGGTATTCTCACACACAAAAATTGCGTTATATGGCGTGGACTTTACTCGCatgaaaaggttggatggaaacctggttactaTTGAGGGCAATAGTAATTGCATCTTTTTGATATCACTAACTCCGCCATAGCTCGTTGGtcaaagcctatggggaaattaatgttttttttgtctCAACGCCGAAAAtgaggtctgtggtaaacacaggtttaggagatcttataGGTTTTGTTCTATTAGATCGTCTTCATCAGCTGATGTCAATTTTGGTTAATTTGAAACATTAATGAAATCAAATCAAGCACATAAATTCCAATTTCCACTCAAAATTTTCCGAATTGAAAAGCATTGGAAGAGAATTGGCGTGAGGATTTCATTGTACTTTTTGagttgactggaattgaaatggaattgaccccaactctggttatctcatagaacaaaatgtgTAAGATCttctaagcctgtgttaacctccgACTTTATTTCTGGTGTTTATCCCAAAACCCCATTCTTTCCCCATTAATTTCCCTTATAGGAATGGCTGAATGAACTAAAGATAACTCATTTCTGTTTTTTGGGGACTACAAGCTGGTGAGCTTTATTACTACACATACATGAATGGGATCAGATGGGATGTTTGTGTGGCTGCACACAGCAATTGACTAAAGTACACACTGCAGTTGTTTGTTAACTTCACTTGGTAGGGCTAACACTGTTGATTTTAGAAAATGCTAAGATTCAGAACGTCTGTAAATACGCCACCAAGCATTTAGGCATAGCTTTTAACATCAATGTATTTGTAAGTAATTactcagaatatatatatatacatatttttttttaatctaaaAGTGTATATTTTTATATAGCCTATGAACATAACATTACATTTCACATTCCACCACCAAGTGCTAACTCATAGCCcttctagtaatttaataggatctctgtcATAAACTGTCAAACTTCCAgaaatggcagccatattggtcagggagaaatccaaccCAGTCTAACTGGAATGAATTGCATTAGAGGTACAATCCTAAAAGTAAGGTATATGACATAAGAAATTGTGTGATAGAATTattgtcaacctaaaatattgtcataATTATAAATTCTGTTTATACAGGTTTCCCACACACTTTCtgtataaatagcctctaaaatatatgtaaacagaccataaatgCCTCCTTGGGAAGCTGTGAGTTctattatatgatacaatatcagtagactacttgttgcatttacaacttgtctaagtcctatcatcaactgatttcagccagtgtatggctgtgggatgttggcatattggcagttaatttgAGGGGGGAAATCATTCCGctaaaactgtctggctagctagctaacaaacacagtgcagataaattcttccatatatttttttttttacactgtctTATCACTTcactggcaaaccatggttgaccaacttCCTGACAAAAATGGCTGACCTATATCCCATCATAAGGTTCATggccattctagtattctaaaTATATGTGCCAACTGCTGTTCCACACtgtattattttcaaaattgGATTATGTCAGTGCTACATTTTGCTGTTGTCTTTCATTTTGTTGTATTTGTCCTTTCCCAACACACATTCTGTCACATTTTGAGGGTGTCTTTGTCTTATCCTTTTCTCTCCATCATCATTATTTTTATATCCTTTGTGTTGCAGTAAATCAATGTATAATTACTTGAATAGCTGCATTCCTTCTAATTCCAACTGTGAGCATGGATTATAGGAGAGGATAAGGTATTCATTGTGTAATTGTTTTATATAGGTCTAATTACAGTATTTTTAACTACATTAAttatttttataatataatatataggtGAAACTACCTTAGAGCAAACTGTTCATGTGATGCCATATTTTCATCAGTTTTGTACCAACACAAGTTCTTTGTTACACTGGAACAAATTATAAGCAACTAAAACAAAATGTCTCAATAAATACAAGTCATAATGCATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1762338 lncRNA upstream 22568 33394954 ~ 33398266 (+) True G1539890
TU1762333 lncRNA upstream 28991 33391585 ~ 33391843 (+) True G1539887
TU1762332 lncRNA upstream 29614 33390998 ~ 33391220 (+) True G1539886
TU1762262 lncRNA upstream 34433 33292711 ~ 33386401 (+) True G1539824
TU1762277 lncRNA upstream 64213 33352826 ~ 33356621 (+) True LOC110496035
TU1762991 lncRNA downstream 30200 33456752 ~ 33458957 (+) True LOC110496797
TU1763008 lncRNA downstream 34680 33461232 ~ 33461432 (+) True G1540519
TU1763009 lncRNA downstream 34970 33461522 ~ 33461832 (+) True G1540520
TU1763011 lncRNA downstream 35892 33462444 ~ 33462735 (+) True G1540522
TU1763030 lncRNA downstream 47905 33474457 ~ 33474722 (+) True G1540540
XM_021571673.2 mRNA upstream 31080 33380590 ~ 33389754 (+) True exosc7
XM_021571667.2 mRNA upstream 64143 33352795 ~ 33356691 (+) False LOC110496035
XM_021571666.2 mRNA upstream 248720 33086601 ~ 33172114 (+) False LOC110496034
XM_021571665.2 mRNA upstream 248720 33086862 ~ 33172114 (+) True LOC110496034
XM_021571664.2 mRNA upstream 370453 32994534 ~ 33050381 (+) False LOC110496033
XM_021571677.2 mRNA downstream 6814 33433366 ~ 33450101 (+) True LOC110496040
XM_036952524.1 mRNA downstream 30370 33456922 ~ 33458964 (+) False LOC110496797
XM_021571678.2 mRNA downstream 53544 33480096 ~ 33489024 (+) True LOC110496041
XM_021571682.2 mRNA downstream 82284 33508836 ~ 33512426 (+) True LOC100136630
XR_005037569.1 mRNA downstream 83660 33510212 ~ 33510343 (+) True LOC118941240
TU1762103 other upstream 360977 33058990 ~ 33059857 (+) True G1539671
TU1762072 other upstream 400290 33020228 ~ 33020544 (+) True G1539641
TU1760548 other upstream 1666643 31753710 ~ 31754191 (+) True G1538208
TU1760346 other upstream 1840514 31578167 ~ 31580320 (+) True LOC110496008
TU1760344 other upstream 1848595 31568891 ~ 31572239 (+) True LOC110496006
TU1762993 other downstream 29008 33455560 ~ 33458424 (+) False LOC110496797
TU1763041 other downstream 62785 33489337 ~ 33491121 (+) True G1540551
TU1763040 other downstream 108724 33535276 ~ 33537564 (+) True LOC110496043
TU1763554 other downstream 652166 34078718 ~ 34079074 (+) True G1540996
TU1763847 other downstream 701789 34128341 ~ 34129659 (+) False LOC110496058

Expression Profile