RNA id: XM_021571677.2


Basic Information

Item Value
RNA id XM_021571677.2
length 7250
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110496040
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33433366 ~ 33450101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAAGCAAGACCTCTTCTCTGTTATGTCTGTCTCCTCTTTACCGGAATGGAAACAACTCCTGCTAGAgcgaaagaggagggaggaggaggagcgagagaagagagaaaaagaggaggaggacaaaCTCGCCAGCATGCCTGCCTGGAAGCGAGGGATCATCCAGAGGAGGAGAATGAAACAGGAGAGTTTCGGGGACAAGGAGAGGGAGGGCCCCCTCCAAGTCAAGGAGGGCAGGTCCCCCTCTGATCCTGCGAGTGACctggacagctctacactagtgcAGCTGGGAAGTGAACCACCACTCAGCCCAGACATCACGGGGCCTTGGCTGGATGAAGAGGCTAAACCGCAGTGTCTGGTGTTAAAGGAGACCATCATCCCTGTCGGACAAAACTCATTCATTCGCACACATGGCggatggaggaggggaagagaagcaGAGAGGGCTGGGGAGATGGGCCACGAGAAAGGGAATGAGCAGGAAAtagaagtagggagagagaggcaaaaggagaaagaaagaggccaCGTCAAAGGTCATGATGGAGAGTCTGGGAAGGGAAGAGATATAGAAATACAAATAGAGCGATACAGGGACAGGAGTGGgggcagagaaagggacaggagtGCCGGGAGAGAGACGAGCCGGGATACtgtgagagacagggaaagggatTGCccgagagggagaaaagaggaggagagggaggagggagactcaaATTCTCCAACCCCCAAGTACTCCTATCCACTAGTCCCAGGCCTTCGTACTATCAGAGCAGACAACATCATCATTATTGAACAGGACAGAAAGGGAAGTGATGAaaggaggggtagaaggagagagtcagagagggagagggaggtgatggAAGAGGAGCAGGAAAATAGAGACGTAAAGATGGACCTCAAGGAGTTTCTGGCTGGTGGAGGGAGTGTCACAGAGATCCGAGCATCAGAAATATTGATCATTAAACCCTTAGCTGGCACTGAGGACTCAAGAAGTGGAGGTCTCAAAGGGACAGGcagggaaggagatggagaaagagggagagatgcaaAGTGCaataaagatggagggaaagactgtgagaggcagctggagagagaggtggcatGGCTGATGAtgaaagataaagagagggaaAACTTGAGGGAGAAAGACCGACCACGGACACAAGTAGCTTCTTCAGAAAAAGAGGATAGGAGATATGGTGACACAGATGACAGTATCCACAACGAGAGAGGAGTTAGGGTGAGTGAGCTGCTGAGTAAATTTGGGGAGCACACAAAGAAATTCAGAGAATATCCAAAACCCCCATCCCGGTCTAAAAGCTCAGAGTGTTTCATCCGGCCTGGCAGGGGCAGAGAACCGTTTTGTCTGGATgatggagacaggagaggggaggaggaacaTGCAGGATTCAGGGGTGTGCCCAAGCGGTCATTCAGCTTCTCTGACCGTGGGATATGCACAAAGGAGAATGGCATGCAGGACGAGGGGAACCATGATAGGAAGGTGGTGGAGAGGACATGTTCAGACAGGAGGGTGGCAGCAAAGGGAGATGTAGTGGAGGGGGAATGGTCAGAGAGGGCAGGCAAGCAGGAGTGCTGGACCTGGCTTTCAGATAAAGTGCCTGTGGGGAAGCATAGAGAGGGATGCATAAAAGCAGACAGGGCGGTAGGGGGACAGCACGAGAGACGGCCTGCTGTGGAAAGTAACGCCGGAAAAGAGATTGACCGTTGGGTCGAGAGAGTAACAGGAGTGGAGTTAGATTTGAGCAACAAGGGGACAGAGGAACTCACAGAGAATATGTATGGGGAGGTAGGGTTTACAATGGCCTCACTTAGAAACACCGAGGCCTCGTTTGCGCGAAGAGTGTCCATCAGACAGGATGGTCGAGAGAGAGCAGTGGAAAGAGAGGTGGAGCAAACGAgagaagaaagtgagagagggttGGACAAGGCGAGGagcaaagggagagagggggtgggtggaAGAGAGGCAGAACCTCAAGTGCGGGAGAGAAGGGAGTCAGACTTTAGGCGAGGATCAGAGGTAAGGGACATGAAGAGGGTATCAGAGGTAAGGGACATGAAGAGGGTATCAGAGGTAAGGGACTGCACAATTTCAGTTGAAACAACTCAGCAAAACTGTGTGATCACCCTCTCCATAGACAGAGCCAGTCCTCCTCAGTCTGTCGATAGTCATTACAACCACGTGTCAGCGTTTACAGAGTGCTCATCAAACTTGCTCAGTACTGTGGCACATAAAGGAACAGATTGGCATAGTAGTCAAGGAGCACCGGGACACCATTCAACCCAGTCACCACTGTCACAGCACACAGAGGATCTTATCAACAagatagagagagtgggggggacaGTGAATGAACGTGACAATCACAAAGGGACCCAAACATTGATGCTGGATGGCAAAGGCGTGGTGAGGGAggacacagagactgagagagggagcAAAGCTTATAGGGAGCCAGGTGAGGTAAGCAAGGACACTATACTTTCACCTGGCGCACACGTGCACAGTCATGTTTACCCCAAAAAGTCAGTTCTTGAAGTGACCCCTAAGTGTCCTAAGTCTCCAAAGTGCTTTGCCTCAGTTGGAATCCCTCCAATGCCACTTGAGATACACATACCCAGGACCGTGTTCTATGGTGTGGGGGAGGCAAGCCTCCAAAGCGAATACGACCGGAGCTgcgaaggagagggaggaaaaggtgTGGAGAGGAAGGACAGTTGCAGGATCGGCAAGCCCTTGTCTCACATCGAATCCTTGCGAGAGAAAAgccaacagagagagaaggagaggctgAGGAACATGGAGGGAGTGGCAACGACGGGGGATGATGGAGATGCGACTGAGGGGACAGAAAAGGCTGGGACTAGAAGGACTAGAAAAGCTTCATGTTCAGACTGGtgtgaggaaggagagatggggaacgaaatagagcgagagagacagagacaggaaggcTCCCCACCGCAGACAACATCCACTCAGTTTGACGTCACACAGGAAGTGAGCGTGTCGAAAGCCGTCTCCCagcttcctgttcctctctcgtTCTCGCAAGCTGtcaaaggagagaaagaaaccaGAGGGATCTCCATTGCAGCCTGTGAAGTAGCCTTGTTCAGCTCTCACACGACTGAGAGAGGGGAAGATCCAACCAAACATGTACTAGCAGAGTTACGGTGCGACAGGGGTCGGCAGAGGAAACAGAACACCGGAggcagaggagaagaaggagaggataAACTCTCAGAGGAAGAGTACAGGCTGCATTATCTGCCTCCTTCACACTCTCCCGCGCCCTtagactctctctccccctctctgcttcaccctccctctcttgctGAAATGAGCCGGATCTATAACTTGAAAACGGTGGGGTCCAGGGCGGCGGTGTGCATGAGTGACAGGACCGTGGATAGGCCTATCCCATCACACACTCCTAAGGTACAGTCCGACATATCCGCAGAACAACAGGAGCCATGCAGTCCAGAGAGATCAGTTGGGAGGCTGACACAGAAGCagctgtggggtggtggtggggctCCTGGGAATAAAGCCTCTTCCAGCGATGAGAAGTCCGGACTTCAGACTGTACAGCGGCAGGTGGAACAGCTTCAGTTGCGAGAACAACAGGAAGTACAGAGACTATCACATGACGACAACGCAGCACAGTCGTCTTTTGGACAAAATATTAATTTGAAAGATAAAGAGTCTAAAGCTCAGCAAAGCCCTAGGATATCACACAGCCAGCCTAATAAGGAACCTCAGCAGAAGCATCCGAGGCAAATGGACCAGCAAACAATCCTAAATCCCAGAAAATCTCAGTCCAATCTGCAACTGCACTCTGAAAGGCCTCCTCAACCCAAGCAGGCCCAGTCCAACCAACCCAAACAGGCCCGATCCATTACCATCAACTCCAGATCTGTCCTGACCCCCTCTCCTGAGAACTTATTACACCCAGACCAGGGAGTACCAACCACCCCATCAGCTTCTCCATCCCAATccacctccgtctctccctccccttccccttctcCGACCCATTTCACCATCAGAAGCCTCTCTGGAGGCCAGCAGGTCAAGAGGggcaccaccatcaccatcacccccAGGAAGCCTGTTGGAGGGGCAGCCGTGGAAGCTGTTTCTGTATCCTCTAGACCCCTGGCCAATACGTCTGCCCAGTCCCAGATGCCTGTCCTAaccgaggaaggagagagaggcaagaAGAGGTACCCCACTGCGGAGGAGATCGAAGTGATCGGCGGGTATCAGAACCTGGACAAGTCCTGCCTGGTCAAGACTTCCAAAGCATCTCCCAAAGGGGTGAAGGTGTGCTTCGACGAGACCCAGCTGGAGCAGGTGTGTGAGTACCCATCAGAGACCTCCATGTTTGACTCCACCCACTACCCCTTACTTGGTCaggtgaaagggagggaggaggaggtggaggaagacgaggaggagagaggagtgctTGTGTCCAGGAGCAGCAGGAATGTGGGGGCAGCGGTTGGCCTGAGAGTGCTGAGAGTGGATGAGTCTTGCCATCGGTAGACATCAGTCGGCTCGCCAAATTGCTCAAATGATGTGGTTAAGATTAGATTTTATCTTGCAATATGACTTTTGTTTTCCTGTATTTTGTTTCTTTGAAATTATTCATTTAATGTTTGTAATCTTTTTTGATGTacaatattttattttacatAGGATCAGGGACTATTGGTTTTGAATAAAAGAAAACAACAGTTTTATGTAGTTTGTGAGATGAatgtgtaacgatgtgcgctgagagtcgggaagcaaattcagggagtgagtgttttaataattAAACGCAACATAATACAAACCACAAACAACGCATAGACAAGGaactggaacagaaacaatgacacctggaaaaggaaccaaagggagtgacatatatagggaaggtaatcagggaagtgatggagtccaggtgtgtctgatgatgcgcaggtgcgcgtaacgatggtgacacgTGTGCCCCATAACGAGCACCTTGATGACCAAGAAGCTGGAGAGGTAGCACACGTGACAGAATGGTGGATGGAGCCTCAACTCCTCTATTTCAGTGTAAAAGTGTAAAGACAATATGAAAACATGGTACATATTGTAGCCTATAATCTTTACTATGTGCACTTGTTGTATTTTTACTATCAGGTGTGTACTTTTGGGTGATGATCACGTCTATGCAAGTTAGTGGATTACAAATGTATGGTAAAAAGGGTCCGGTCAGTTTAGTTTTAGTTAGCTTAGATCAACAACACAACAACGTCTCTACAGTATATAAACTCTGCATCAGCACTGTAACGATTCCCGGtgcattccaaatgacaccctattcccgacagggctctggacaaaagtactgcactataaagggattagAATGACATTTTGGACACATCCTCAATGATGCTTACCGTATATCATCTGGTCCCTGTGCCTGCTGGATTTGCTCATACCGATGACATAAAgaacaggtcatctacaagtccaagGTGAATTTTACACCCCTCATGTGTAGTTTCTGGTAAACCATGGCTATATGTAACGTCATGACAATTCTCTTTTGTTCAATTACTATTTCTGTTTGAACCACAACATGGATATCAGCTAGCCTTAATGCACATGATTTAAAACACTGATGATACATTATGGAATAATCACCAATACACATTAttataatctttttttttttaggtttcaCTGTTTGCCCATTAGTGGAATTAATGTGGTAGAATGAAAAAGAGtagtatatctactgtatctatgctAATTTGACTGCTTAGTTTTGAATGGAAAAGGTATTATGTTTGTGTCTCTGGTGTTATCATGTGAGACTACAGCACATGGGGGATGTGGGTGAAAACATGATTTAAGGGATGTTTACAACATTTAATCCATAGAATggtcctttggaggaaggattgGTGACATATATTTAGCATTTGTAtctaaaagcataattgagaaatgATTCATCAAAGTTGGCATATTTATGAAATGTTGATCTTACACAGGTCTCTTTTTTAAGACTCCATTATGtttatctgtaggtgctacaaagcAAACATTGGTGGCATATGAAGCTTTACCGCTTGCTCTGAAATATGAGTAGTATTTTGTTTTCAATTTTCAAATTTTCTTGCATTAATTTATGAATACTGAAGAATAAGTACATTTTTTGATTTAGCAATTTTTTCTATATATTGTTGAACGTAATATACTCTATGGACATATCAAAGTTCTCTGTTACTTTTAGTTATTATCCAATTTGTAAGCATTAAGAACAGAGTGAATgtgaaaatgtattcaaaatggttgccctctgctggtgatttgcagGATGTACAATATGTTGAAAGATTTGCCAAATATTTGTTTATATATTCTATATTCTTGTTTATATTATATTCATTAATTCATGTAAGAAAATTGTTATTGAAATCAAAATACCACTCATGTTTCAAAGTAAGTGGAAAAGATTTACAAGACACGGGTTTTTGTAGCACCTACATATGAAACTTGacgtcttaaaggaggcctgggtaAGGCCAAAATGTAATAACTATGACAACTTCAATTAATTATTTCTCAATTCTGCTTTTAaatacaaatgtaaaatatatttcaattaTCCTTCCTCCAAATAAGCATTCTATGGATTAAATGTTGTGAAATCTCCAAACTCATGGTATTTTGTCATCCTGGTTTTGTGAGGAATCACCGATATCCCAAATAAGGGCACAAACGTTATAATGGCTCCATGGGATGCTGTAATCTCAATTTTAGGTGCTCTTTTTTGATGAAAAATAATCTAAATGAAGAATATCAGATTGATGGTATATCTGATTTATGCTCCCACGTGTGCAATTTTAATACTTGGTTTTATTCTGTTTTCTATTGTGGTCGAAGAAGCTGGCTTCATGAGAGAAAAACATCAAATAAATTATTTGAAACGAATTGAAGTATCATGATGGGTTGTGTAGATGTGACTATAGATACATTTATGTTTCAAGGATATTTAGAGAGTATGTGATATTATCATGTCATGGTGGGTCTTCTTGTGCACAAACGTGGCTGCATTGATGCAATAATTTACAATTACAGCACAGAGGTTACAGTCTGGCTGTCCAAACCAATGATTGTATTATTTTCTTACCATAAAAAACAACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1762338 lncRNA upstream 35100 33394954 ~ 33398266 (+) True G1539890
TU1762333 lncRNA upstream 41523 33391585 ~ 33391843 (+) True G1539887
TU1762332 lncRNA upstream 42146 33390998 ~ 33391220 (+) True G1539886
TU1762262 lncRNA upstream 46965 33292711 ~ 33386401 (+) True G1539824
TU1762991 lncRNA downstream 6651 33456752 ~ 33458957 (+) True LOC110496797
TU1763008 lncRNA downstream 11131 33461232 ~ 33461432 (+) True G1540519
TU1763009 lncRNA downstream 11421 33461522 ~ 33461832 (+) True G1540520
TU1763011 lncRNA downstream 12343 33462444 ~ 33462735 (+) True G1540522
TU1763030 lncRNA downstream 24356 33474457 ~ 33474722 (+) True G1540540
XM_021571675.2 mRNA upstream 6814 33420834 ~ 33426552 (+) False nrm
XM_036952523.1 mRNA upstream 6814 33421720 ~ 33426552 (+) True nrm
XM_021571673.2 mRNA upstream 43612 33380590 ~ 33389754 (+) True exosc7
XM_021571667.2 mRNA upstream 76675 33352795 ~ 33356691 (+) False LOC110496035
XM_021571666.2 mRNA upstream 261252 33086601 ~ 33172114 (+) False LOC110496034
XM_036952524.1 mRNA downstream 6821 33456922 ~ 33458964 (+) False LOC110496797
XM_021571678.2 mRNA downstream 29995 33480096 ~ 33489024 (+) True LOC110496041
XM_021571682.2 mRNA downstream 58735 33508836 ~ 33512426 (+) True LOC100136630
XR_005037569.1 mRNA downstream 60111 33510212 ~ 33510343 (+) True LOC118941240
XR_005037564.1 mRNA downstream 60701 33510802 ~ 33510928 (+) True LOC118941235
TU1762103 other upstream 373509 33058990 ~ 33059857 (+) True G1539671
TU1762072 other upstream 412822 33020228 ~ 33020544 (+) True G1539641
TU1760548 other upstream 1679175 31753710 ~ 31754191 (+) True G1538208
TU1760346 other upstream 1853046 31578167 ~ 31580320 (+) True LOC110496008
TU1760344 other upstream 1861127 31568891 ~ 31572239 (+) True LOC110496006
TU1762993 other downstream 5459 33455560 ~ 33458424 (+) False LOC110496797
TU1763041 other downstream 39236 33489337 ~ 33491121 (+) True G1540551
TU1763040 other downstream 85175 33535276 ~ 33537564 (+) True LOC110496043
TU1763554 other downstream 628617 34078718 ~ 34079074 (+) True G1540996
TU1763847 other downstream 678240 34128341 ~ 34129659 (+) False LOC110496058

Expression Profile