RNA id: XM_021571680.2


Basic Information

Item Value
RNA id XM_021571680.2
length 2320
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110496042
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33526141 ~ 33533687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAAAATTGGCGAGGGAGCGGGGGTGTGGCACACTTGGAAACAATGAATCAGGGAGAAAATATGAATCCGGTGCAATAATCTCTCCGAAAACCACTTGAAATCAATCTGTGTTCTGCATTGAACGAGTTTACGTTAGAGCAACATTTCAACTGGTTTGGGCAACATTTTACGAAAAGATTAGCTGTCAAACTTACTTAAAGTGACAGAAGTCCGAATCAGTTGCGAGTTGCACTCTGGTTGCTGAATTCTATTCGATCTGCACTTTCATAGAAGACAGCAATCAGACTGAAACTCATATTTACCTCCCTGGAACTTTGCAgttggtattggagtggctaatCACTGAAGTGGAAGAACAGGGATGAAGAgtttctcctgtgtgttttcCTGCCTGATGACAGACTCCCCATAGAGCTGCTGATTCGCTCGATCACATCCCTTTAGTGTCCAGCTGGTCTTGCCATCACACCTCACAGCTTCTCAAACAGTTGGGAACACACTCTGACAACAATTGTCACCCACTCATTTAGTGGCAAACACACTTCTGTTCTGCCTTGTAGTGGCAGAACACCAATACTAGCCCAAAGCCAGGGTACTCCCacgccttcacacacacacacaccctctctttctcacacacacatcatggCGAGCGTGTTGCCGTACGGCTGCTTCACCCACGCAGTGGTGCGGGGCATCCCAGAGACCTTTGGGAAGGTCGATAATGAGGAAACCACGACGGACTTGGCCAAGGCACAGCGTCAGTTTGGGGTTCTGACGGGGGCACTGAGACAGAAGGTGGGGCTGCAGCTCATAGAGATCCCTGCCGACCCGGAGCTACCAGAGAGTTGGAGGATAGAGGATGTAGCTGTGATACAGGGAGACACGGCACTCATCACCAGGCCATTCAAACAGCAGAGACGCAGAGAGgcTGAAGCGGTGAGGAGGGTGATGTCGGAGCTGAACCTGACAGTGGTGGAGTTGGGGGCAGAGGAGGGAGGCTCCGTAGGGGCCACGCTGGAGGGCAGCGACGTGCTCTTCACTGGCAGGGAGTTCTTTGTGGGCATCTCCTCTCACACCAACCACAGAGGAGCTGAGGTTCTGGCCGACACTTTCAGAGACTTCACTGTGTCCACGGTGCCAGTGTGTGAGGGAACTCGTCTAAAGAACATCTGCTCTATGGGAGGTCCTGATACTATCATCATCAGCAACAGTGATGGGGCCAAGAAGACCCTCCGGATGATGGAGCAGCTGACTGATCACCACTACGAAATGCTCACGGTCCCGGCGGGCGCAGCAGCTAACTGTGTCTATGTCAGGGGCCCCTCCAAAGTGGACTACCTGCTTCACCCGCCCACTGAGGAGTGTCCTGACAGTGTCCCTGCCTTCCAGAAGCTGACAGACTACACCCTCCTCCCTACAGCGTGCAGCGAGGCCTCCAAGCTCGGAGGCCATCTGTCTTCATTCTGCCTACTTATCAATAGGAAGCCGAACTTCTGAATACCCTGCCCTTCTCCCATAGTAAACACATAGACCTTCATTGGCTATAGGAAAATACAAATGTGAACATAAAGAAAATGGCCAACTGTTGGGCCAGGGGCTAAAGGGAAAAGTCTAAACTGTATCCTTGGGACATCGCAACTCTGACgtcaccccattgaagttgacattttaaaactgttacggtaagggttaaggttagaggtatggttaaggttaggtaagttgtatggtttagggttaagtttagggtaggTAGGGATGTCTCAAGCATCCCGGATAGCACTAAATGGGGCTAAAGAGGGTTCCCCTTCTGTGGAAAGAGTGCAGTGTGGCTTGAGGATCTTTAATAGGCTCTAGATTTGAAATGTAGGCGTACTGTATACGGGCCCGGCTCTACAGAGATGCTCTCTGGAGACAAAAGCATAGCCAAATCAGTTTTATATCCCTATATTATATAACAAGACTTGCTGCCATTATCCAAAATGTCTGATCCATCCTCCGAACCACACTCTCTGCGCTCAGAGTAAGTAGGCTGTTGTTACGTTGcggccatagaaatataatccataGAAGGGACTTGCCACCGCTAACCATgtcaatttgactggtaaacacATGGGTACACTCACAGTGGCTGCCAGTCCTGACTTAAATGGGCACATCCGTTGtatagattctatggattctgtCTATCGTTGTATAGGCCTTTTGCAAatttcagggcaggtggggcagagcacttttttttgttgcctgttttgcatgttatcaGTTATCAAAAtgtattgagttaataaagctgcatacaaacatgg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763130 lncRNA downstream 12157 33508819 ~ 33513984 (-) False G1540627
TU1763132 lncRNA downstream 12157 33508819 ~ 33513984 (-) True G1540627
TU1763160 lncRNA downstream 17530 33508353 ~ 33508611 (-) True G1540648
TU1763150 lncRNA downstream 27842 33498069 ~ 33498299 (-) True G1540640
TU1763147 lncRNA downstream 31339 33494599 ~ 33494802 (-) True G1540637
TU1763168 lncRNA upstream 4283 33537970 ~ 33538194 (-) True G1540656
TU1763231 lncRNA upstream 86749 33620436 ~ 33621322 (-) True G1540713
TU1763139 lncRNA upstream 89860 33623547 ~ 33623787 (-) True G1540633
TU1763235 lncRNA upstream 93292 33626979 ~ 33627240 (-) True G1540717
TU1763566 lncRNA upstream 123038 33656725 ~ 33656944 (-) True G1541007
XM_021571674.2 mRNA downstream 111183 33392413 ~ 33414958 (-) True cdcp1b
XM_021571670.2 mRNA downstream 146633 33366687 ~ 33379508 (-) False LOC110496036
XM_021571671.2 mRNA downstream 146633 33366687 ~ 33379508 (-) False LOC110496036
XM_021571672.2 mRNA downstream 146633 33366687 ~ 33379508 (-) True LOC110496036
XM_021571669.2 mRNA downstream 146634 33366687 ~ 33379507 (-) False LOC110496036
XM_021571686.2 mRNA upstream 27155 33560842 ~ 33573866 (-) True LOC110496044
XM_021571687.2 mRNA upstream 38327 33572014 ~ 33573707 (-) True LOC110496045
XM_036952525.1 mRNA upstream 46109 33579796 ~ 33581971 (-) True LOC110496046
XM_021571689.2 mRNA upstream 73262 33606949 ~ 33610948 (-) False LOC110496048
XR_002469622.2 mRNA upstream 109239 33642926 ~ 33652838 (-) True LOC110496928
TU1762958 other downstream 134389 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 589572 32899578 ~ 32936569 (-) True G1540148
TU1761767 other downstream 964021 32561726 ~ 32562120 (-) True G1539348
TU1761118 other downstream 1467356 32057311 ~ 32058785 (-) True atp5if1a
TU1760970 other downstream 1810960 31714506 ~ 31715181 (-) True G1538595
TU1763210 other upstream 68787 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other upstream 70461 33604148 ~ 33610893 (-) True LOC110496048
TU1763572 other upstream 123954 33657641 ~ 33674231 (-) True LOC110496049
TU1763897 other upstream 628240 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 1201687 34735374 ~ 34739639 (-) True atp9b

Expression Profile