RNA id: XM_021571686.2


Basic Information

Item Value
RNA id XM_021571686.2
length 6146
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC110496044
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33560842 ~ 33573866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATACTTCATTCTAGTCTCCATCTGCATCACACCTTTAGCAGGAAACTGGATGTTTCCCCATTCATTTGATTAGTGTTCTTTCCCGTCTCTGTAAAGTGAATAGATTCTGCAAATAGCCCTCCTATTGAGAACAACAAACACTAGCCTCCTACAAGAAGATGAAGAGTAAAATTTTGATTGTGCTGACTGTCCTGGTGGTCTTCATAGCAGTGGCCCAGTCCTTGACCTGTAAGCAGTGCAGTGTGGGGCTCTTTGGGACATGTTTCTTTCCCAAAAACATGGTGTGTGACAACTCCACTCTCAACTGCTTCACCGGAGAAGCAAAATTCAATTCCACTGAGATTCTGACACTCCACACCCGTGGTTGTCTGGACTCAGACCTGTGTGGCAAGACCATCACTGCAACCATCTTTAGTGCTGGTGTCACGAGCAGCTCCTCATGCTGCCAGACAGACCTGTGTAACGGGGCCAGCTCCGTCCAGGTCTCTGTGACTGTGGCACTCAGCGCCGCCCTGATGGCCTGGGGTGTTTAGACTGGACAAACAATGACTTCTGTTCACAGTGTTGTTTAAACCTGTTACACTTCTGTTCACACTGTTTCACACTGTTTAAACAGGTTTCAGACTACTTTGTCTCCATCCTCTATTAACTAGGTTTGGCACAGTGAGCTCAGAATTTGTCTTAAACTCCTCATCTACTTTAATAACATTTATCAACTGAATAATACTTGCAACTATGATACGCAACAACTTAAAGTGCCTTTacactactctactgaacacacaTACAAATACTGTAATATTATTCTGAATAATAAAGGAATTAAGTTGTGtcacaaaatggggaaaaaaggtgctgtttttcattgttGACACAATAATGTCCTCTACACTTTtatattcagacattttaattgaGAATGTACTGTTTGGACAAAATTCTGAAACAATAATGGATGTTTGCATGATAATAAGTTGAACAAATACTGCTTTAGTTAGGAGGCTGCCAATCTGTCAAACATAAGAAACTGTAACTGAGTAAATGGTCAAATAAATTCAAGACAAACTTATacatctagggttagggttaggctatgGCTCAGGTAAGGGTTGAGCCAGTGTGTGGACATCAAGCTAGTGTCCGTGTACATCATTTGGGTGTCTattcacattagcctacgttaatGTGTCTTCTACAGTAGGAGATTCCACCCTGACACCATAGGCAGCCGAACTCAGCTGGCAGACAGGCTGATGGAATCGTTCTCCACCCTGTTTCCCTGCAACTCACTTTCAAACCAATACCGCCATCAAGTGCATGAGAGAGACGACAGCACATTCGTGAATCGACGACTCGGCCCAATGCTGTCAAATGTCCAGAAAATAGTACTTAAATTAGATGACTGGTGGGTTTGATTTCAGATTCAGTGTGGTTCTACCACACCAAATACCTACATATGCATATTTCAATATAAGCACGTCAATATATATAAGCACCTCTCATTGATCTCAAAGGCCAGATTTAAACACAGCATCTGTTTCCCCTGATGAATGTAATTGTATGTACACATCATGTAATAACAATGGTATTATTTATAGTAGCTTGTGTTTTATACCCTTCTGGTGTAGAGCATATAAACATGAATAAACCCACCTAATTGTCATGATATCACAATTTTCCAGGAAGTGGAATTAGTCAAATATTAAAATATGTAGATAATTGTCTACCTACATAATGACACATATCAATAAAATAATACACCAGAACACCTGATTAAGTGTCACACAACACCTTCAAATGTCTGTTACATAAGCTTATCACTGACGCTTGAGTGCCTGACCCGATGAGCAGACAACCGACATTTAAATATCTTCATGTACAGTAGGCTGCATTAACAAGATGAAACCACTCAATATCGCGGTCTGCCGGTCGTTGGGCTAGTACAGGTGCAATTCCTTCCACGTTGTGTAGGCTTCTTTTTTATTTCATAACCCAAATTGCATAGGTGACCTACTATAGACTAACGGAATAGTTGGGAACATGTAATTACACCTTCCCTTCTTCGCCCCTCTCTTTTCCACATCtctcacgtacacacacaatcGGTGGAGTTGAGTCGGCTAGGTTAACATCACTCGTTGCTAGTTGAGCGTTGTTGGCTTCCACCATCAGGAAATGGAGGATGAGTGTGTAGCGAGCGACACAGAGGGAGGGGAAACTGACTAGACGTTTACTGGAAGTCCCACACAGAACGTGAGCGAGGTCTTCCAGTTCCAGTGGCAACATTTTAAACAAAAAGATGAGTGACGAAAATAGACTTCAAGTTGAACTTTTTGTGAAGGCAGGCAGTGATGGCCAGAGCATTGGCAACTGTCCATTCTCCCAGCGCCTCTTCATGGTGCTGTGGCTCAAAGGAGTCACTTTCAACGTCACCACCGTGGACATGAAGAGGAAACCAGAGATCCTTAAGGACCTGGCCCCTGGTGCTCAGCCCCCCTTCCTGCTCTACGGGACGGAGGTGAAAACCGACACCAACAAGATAGAAGAGTTCCTGGAGGAGAACCTGTCCCCTCCAAAATACCCCCGCCTGGCTTCCAGGAACCCTGAGTCTAACACAGCCGGCCTAGACGTGTTCTCCAAGTTCTCAGCCTACATCAAGAATTCAAACCCCCAGCTTAATGACAACCTAGAGAAAGGCTTGCTCAAGGCCCTGAAAAAGCTAGACGAATACCTTGGCTCCCCACTTCCTGACGAGATTGACGAGAATAGCGCTGATGATGTCACTTCCTCCTCCCGTCCCTTCCTGGATGGGCAGGTCCTCACTCTGGCCGACTGCAACTTGCTTCCCAAGCTGAACATTGTCAAGGTGGTGTGTCTGAAGTATCGCACTTTCTCCATCCCCAAGTCTCTCTCCAACCTGTGGCGGTACCTGGATGCTGCGTACGCCCACGAGGAGTTCTCCTCTACCTGCCCCAACGACACAGAGATACACATCGCCTACTCAGCCGTGGCTAAAGCACTTAAGTAGGAGGACAAGGGGATCTCATCAGTCACACACACCagcaaatacacacatacacacacacctgatcagATATCCTAGACACACTCACCTACCTACTTGTGGCACTGTACATGtggcagcatacacacacaccaatgcactCAAACATACAGGCACTCCCTCAGACACACGCACACCATTCCAACAGTCTTTCTTGAGAACAGGAAATCAAATCACTGTAAGATCAAGTTGAACATTTTTCATTGACCACTTAAGAGTTTGTGAAACTCTCTGAGGCGTATAGTTTATGGTTCCCTTTTTGTCACGTGGCACATCCACTCTTGATACTGTGTATTCAGGGGCAGTTACACACAGTTAAAGTTGTATACACGGGCAGTAGGTTACATATGGTTGCATCCAACTGAAGGTATAGTGGTCTGTTCAGTCTCTATGATTAATTCTGCACTGCATACATTGCCACATTACCCCCTATTAATTTCTATCTCTCGGCCAAGCCATAAAAAAAACTGTTCCTGTTGTGattacacacatacacgcataccTAGACCAGTTTAACTGCTACCTGCAGCTGAAagagagaggttagttctagGCGTGTCTACAATTATACATTATTACCGACATATTATTACAGTGTTGATATATTGTTCAGGGCAAACAGCCGTTAACAGGGTGGATGACATGGTCAGTTTGAACCAGTCATTTTATACATGCTAAATGATCAGAAGTTAGGCTCAGGGAACGGGAAAGCAGGTCTTGGGCCAATTGTAGTACATTGGGGCACACTATACAGAGGTGTTTCTCAGCACACATTTATCCACACAGAAAACGATTTCAACAGATCTCGGCTTCTCCTTTCTCCGGCTTGTAGCGCTGTGAAGGGTTTATCAAGCTTATGTCCCCATTGTAAAGGCTCTTTTGctagtgaatcaaatcaaattgtatttgtcacatgggctgaatacaacaggtctgtagaccttacagtgaaatgcttacttcaccaacaatgtagttttaagaaaatacctttaaaaaaaaaagtcaagagaataaagtaacaaataattcaagagcggcagtaaaataacaattgcgaggctatatacagggggtaattcAAAGTGAAGGATATTTTtgatacaataaaaaaaaaactgtgagAGGCTCCTATTGCAGAGCAGTTGAGTTACTCCAGACAAAGTAATATGGCTATTGTCGCTGTTTATGTTAAACTAGGTTTTTGAGGAAGTACTTGACTCTGTATGGCCTTGAGGCACCAAGCCCGTTCAGTCATGTTTCACTGTAAATCTGCGGGAAAACTACAGGATGTAATGCAGACGTGCACACACCTCCTCGCATGACTAAACCATAAACGTCACATTCATACAAATTTGAGATGTTCTTTGCATAGAAACTGAAATCTCCAAGGGGAGAATGCTACGGGATTGTGAGTTTGTACTCTTTGATATGGTTAATGACAATGAAAGACTCAATTAAACTTGAAAAAAGAAAAGAGTTTGAACCTTTAGTGAGCCAAAGGAAGGGTTTTACTTGAGGTCTATTGAGGTGGGTGTTGTTTAGGTTGTTTAAATCGACAACACCTTTGAACCTACTACCGTCCTGTGCTTTGTAGTGCACACTTTGAAGTCTTCCATTTTACAGTGACTTGAAATTCAGTCCCCTGGGAAAGAACTGGAAATATTTGTTTGGGTTCTATACAATCCATATCAGCGTATCAAGTTCAGCGTTACAGCGTGAttgacatttaaaggcaatgttccggCTTTAAAGGAGATTGTATTCACGCTAAACGCTGCATATGCCGCTCAATCGGAAATGAGCTCTCTATAGTGCAATCTTCAGCGACACAGATCGAATAGAGCGCTCAGACTGACTCATAGATGGTGCAGTCTCATGGTACTGACTTAAGTGGATCAGCTTAAAACAGCCTTGTTTTAAGCTGATCCAATTTGAGTGTACAAAACctttgtgtacaaaacattaggaacacatgctctttccatgacatagactgaccaggtgaatccaggtgaaagccatgatcccttattgatgtcacctgttaaatccacttcaaatcagtgtagatgaaggggaggagacgggttaaagaaggattggagacaattgagacatgaagtGCGGTGACATGCACAAAATAATatgattattgtggatagtcaggTTAATATAGTAGTTTGCTTAAAATGTTaacatgctttgcaagaataCCAATTTCCCTAAtgatcctgtttacatggacacatctgaagtcaggctacctgatgggacttttgataaatgcagaaaatagccaatcaaaataaacgttctaccacagtaaccatgttatttttgagAAGACTATTAGATTCTGAGTTCGGACACAAAGTTTGTGTGTGAAAGCTATTTATAAGATGCATACTTTCCGTTTTTAACAACTCACTTCACTCGCGTTTAAGATGGAGACTTGCGCTACCGATGCTGGCACATGCTCAGATCAAATACACCGCTAATAAtttgaaagattgctcagaaaaccagttGTTTTAATCGGCGTATgcttactttgattttgaccttAAACCGATTAGGATAACCAGAGTAAGGGgtttacatgactaatgccatacgTGGCcttctgccataatcagtttaatatcgaatggttagagggtgaatgggcaagacaaaagatgtaagtgcctttgaacgggtatggtagtaggtgcctggcGGACCTGTTTGAAGTGTGTCACGGTAAGTTCCCCGTCCACTCAGTCTCCTAGCTCCCCgtccactcagcctactagctccccgcccactcagtctactagttCGCCGTCCAgtcagcctactagctccccgtCCACTCAGTCTCCTAGCTCCCCgtccactcagcctactagctccccgcccactcagtctactagttCGCCGTCCAGTCAGCCTACTACCTCCCCGTCCACTCAGTCTCctagctccctgtccactcagtctactagttCGCCGTCCAgtcagcctactagctccccgtccactcagcctactagctccccgcccactcagcctactagctccccgcccactcagcct

Function

GO: NA

KEGG:

id description
K05021 CLIC1; chloride intracellular channel protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763168 lncRNA downstream 22648 33537970 ~ 33538194 (-) True G1540656
TU1763130 lncRNA downstream 46858 33508819 ~ 33513984 (-) False G1540627
TU1763132 lncRNA downstream 46858 33508819 ~ 33513984 (-) True G1540627
TU1763160 lncRNA downstream 52231 33508353 ~ 33508611 (-) True G1540648
TU1763150 lncRNA downstream 62543 33498069 ~ 33498299 (-) True G1540640
TU1763231 lncRNA upstream 46570 33620436 ~ 33621322 (-) True G1540713
TU1763139 lncRNA upstream 49681 33623547 ~ 33623787 (-) True G1540633
TU1763235 lncRNA upstream 53113 33626979 ~ 33627240 (-) True G1540717
TU1763566 lncRNA upstream 82859 33656725 ~ 33656944 (-) True G1541007
TU1763660 lncRNA upstream 280021 33853887 ~ 33867357 (-) True lrp12
XM_021571680.2 mRNA downstream 27155 33526141 ~ 33533687 (-) True LOC110496042
XM_021571681.2 mRNA downstream 27165 33526141 ~ 33533677 (-) False LOC110496042
XM_021571674.2 mRNA downstream 145884 33392413 ~ 33414958 (-) True cdcp1b
XM_021571670.2 mRNA downstream 181334 33366687 ~ 33379508 (-) False LOC110496036
XM_021571671.2 mRNA downstream 181334 33366687 ~ 33379508 (-) False LOC110496036
XM_036952525.1 mRNA upstream 5930 33579796 ~ 33581971 (-) True LOC110496046
XM_021571689.2 mRNA upstream 33083 33606949 ~ 33610948 (-) False LOC110496048
XR_002469622.2 mRNA upstream 69060 33642926 ~ 33652838 (-) True LOC110496928
XM_036952526.1 mRNA upstream 83832 33657698 ~ 33674304 (-) False LOC110496049
XM_036952529.1 mRNA upstream 118526 33692392 ~ 33695690 (-) False LOC110496050
TU1762958 other downstream 169090 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 624273 32899578 ~ 32936569 (-) True G1540148
TU1761767 other downstream 998722 32561726 ~ 32562120 (-) True G1539348
TU1761118 other downstream 1502057 32057311 ~ 32058785 (-) True atp5if1a
TU1760970 other downstream 1845661 31714506 ~ 31715181 (-) True G1538595
TU1763210 other upstream 28608 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other upstream 30282 33604148 ~ 33610893 (-) True LOC110496048
TU1763572 other upstream 83775 33657641 ~ 33674231 (-) True LOC110496049
TU1763897 other upstream 588061 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 1161508 34735374 ~ 34739639 (-) True atp9b

Expression Profile