RNA id: XM_021571689.2


Basic Information

Item Value
RNA id XM_021571689.2
length 1432
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110496048
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33602474 ~ 33610948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAATTCTGACAGTATAAAATCCAATGTCTAGGACCCAGGCTTTACCAGTTGGTTTTGCTAAATAAGACGTTTGAAAGGGATTTTTTTTTGCGATCAAATCTCAACTCATCACTTCTGTCAAGATGAACAAAATCGTTTTCGGAATCCTTGCAGTTGTTGCATCTTTTATGCTAGTGGAGTCGCTGACATGTAACAAATGCGATGTGGGCCTGGTGGGCGTTTGCCTAAATGCTGCTGATCAGGTCTGCACAACCAACACAAGTCGCTGCTTCACTGGAAAAGCTAccTTCCCCTCCCTCAGTACTTTCCTAGGCTTCAACACCCAAGGCTGTCTGGAGAGTGCTATGTGCAACACCACCGATGCCACCCTCATGGGCGCCACCTACACCATTGTCAGGACCTGCTGCGACACCAACAAGTGTAACCCAGTCACAATCAGCGGCGCAACCTCTGCCAAGCTCTCTGTCACCGCAGCCCTCAGTGCCACCCTGGTGGCCTCCGTGTGGGGCAGCATGCTGTACTAGAACTAGAACAACTAGAAGACACATTCTGATTCTGATTCCGAAGAACCAGAAGACAGCCCCAACATCGAAATAAAGACTTTACATCCTCCAGTCTGAAATAAAGACCAATCTTAGTATGTTTATACATCATGAAATTAGTGTTGTTTTAGTAAACCGGTTTGACGAAATGTGTGTTTCATTCACACTGCATGTTTAAACCAGCTTGACTTGTTTTTCTCATGTTTTGATGGTATGCTGTCACATCGCCCTCTCAAGTTCTTTGCCTCCTATCAGAAAAATGCACCGAGTATCCATAATCAAAGGCTTTTTAGTTATCACCTCAAATTTTGAGAGAAGCACATGTCTCAGAATGCATTAAAGACACTCATTTTGTTACTTATTAGATACTTATTGTTTTGGAAGTCGATCAGTGTATTGTTGAAGCTGTAACATTGAATTCTTAAACTTTACATATGTGTTTTTCTTCGTTCTAATTAAGCTTAAGTTACTATGTGTGGCGGCGTATGTATTATGGAATGAAAATAATGGAAAGCAATCTTTCATTTTTTGCTGTTTTGAATTATCAGCAGTTTTGTAATTAAAAGGAATCACTCACTTTGGTGCAATTTTCACGTGGTACATTTTCCCAACTCTTAGCATAAAGATCGAAACAGATCATCAAAATGCATCATGTTTCAATACTCTAAGTACATGTTCAATTGACTGAGTACAACAAACAAATTCACAAGTCACTTTTTCACTGCACCAGATCACTTTCAATTTCCATTTTTTTGCACCTAAACGTCTATATcggtgggcggcaggtagcctaacagaaaggtcgctggttcgaatcccagagccgactaggtgaaaattcTGTCTGTGTGACCTTGAGCAATTCACTTAACCCTTATTGCTTCTgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763168 lncRNA downstream 68755 33537970 ~ 33538194 (-) True G1540656
TU1763130 lncRNA downstream 92965 33508819 ~ 33513984 (-) False G1540627
TU1763132 lncRNA downstream 92965 33508819 ~ 33513984 (-) True G1540627
TU1763160 lncRNA downstream 98338 33508353 ~ 33508611 (-) True G1540648
TU1763150 lncRNA downstream 108650 33498069 ~ 33498299 (-) True G1540640
TU1763231 lncRNA upstream 9488 33620436 ~ 33621322 (-) True G1540713
TU1763139 lncRNA upstream 12599 33623547 ~ 33623787 (-) True G1540633
TU1763235 lncRNA upstream 16031 33626979 ~ 33627240 (-) True G1540717
TU1763566 lncRNA upstream 45777 33656725 ~ 33656944 (-) True G1541007
TU1763660 lncRNA upstream 242939 33853887 ~ 33867357 (-) True lrp12
XM_036952525.1 mRNA downstream 24978 33579796 ~ 33581971 (-) True LOC110496046
XM_021571686.2 mRNA downstream 33083 33560842 ~ 33573866 (-) True LOC110496044
XM_021571687.2 mRNA downstream 33242 33572014 ~ 33573707 (-) True LOC110496045
XM_021571680.2 mRNA downstream 73262 33526141 ~ 33533687 (-) True LOC110496042
XM_021571681.2 mRNA downstream 73272 33526141 ~ 33533677 (-) False LOC110496042
XR_002469622.2 mRNA upstream 31978 33642926 ~ 33652838 (-) True LOC110496928
XM_036952526.1 mRNA upstream 46750 33657698 ~ 33674304 (-) False LOC110496049
XM_036952529.1 mRNA upstream 81444 33692392 ~ 33695690 (-) False LOC110496050
XM_021571695.2 mRNA upstream 81444 33692392 ~ 33695704 (-) False LOC110496050
XM_036952530.1 mRNA upstream 81444 33692392 ~ 33695869 (-) False LOC110496050
TU1762958 other downstream 215197 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 670380 32899578 ~ 32936569 (-) True G1540148
TU1761767 other downstream 1044829 32561726 ~ 32562120 (-) True G1539348
TU1761118 other downstream 1548164 32057311 ~ 32058785 (-) True atp5if1a
TU1760970 other downstream 1891768 31714506 ~ 31715181 (-) True G1538595
TU1763572 other upstream 46693 33657641 ~ 33674231 (-) True LOC110496049
TU1763897 other upstream 550979 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 1124426 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 1526689 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 1564358 35175306 ~ 35180028 (-) True LOC110496081

Expression Profile