RNA id: XR_002469622.2


Basic Information

Item Value
RNA id XR_002469622.2
length 1022
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110496928
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33642926 ~ 33652838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATAAATAACCTATGATAACCTATATTAGTCTACTATAGCGCGAGTCGGCTTGGTTGgttgctgtctctccctccctcctcctccccatgtcACTTGCTCAGAGTACAGACGCTCCCCGCCTGCTAGAGCGGCGCCTCTCCCTCGTGATTTATTAGCTCCGGTTAATAAAGTTGctttaacaaataaaaataaacttttcTGCTGCGTTCTACACTTGGATCGGAtctggatccaaccaggtctctACGAAATGGGTCTAGTTGTCCTCGATTCCATTTGGAACGGGTCtctatatttaaaaataaaaaaataataattatgcgCATCGGGTCCGGGTGGGAAATCCCCAGGTACATGTCGGAACAGGTCCAACTTTTTGGAACCCAGTCTCTGTATCACAACACATGTTCTATGGGGATCACCAGTCTTTGTCTGTTTGGTACAAATACAACATGTAGCACCTCAGAGCCCAACTGCTAGAGCGGACAAGCAGGTACTGACCCTGTGGTTTCATCCAAGTAGAAAGCTACAATAAAAATAGTGTTCAACATCAGTAGCATCAAGCACAAGGGCTGCCTGGCCACAAATTTCTGCAACACCACATCCACTTCTAGCATCCTGGGAGTCGGCTACAACATCTCACAGACCTGCTCCAGCACCAATCTGCAACGGGGTTGGCTCCGTACAACTACCTCTCACAGTGGCCCTTGGTGCAGCCCTGGTGGCCATCTGGAGCACCTTAGCCTAGACAAACCATTCACAATAAGGATACCTCCTCCATAGGTTTCCATGTGTTGTTATAGTTCTTAAATACATAAAATGTACTAAAACAAGTAATATTCTGAAAAAGACAGCAAGGTTTATGCAGGCTAGTTTCACTAAGCTTTAGTTCTGTGTATTCCGGGTTTCCAAGGTGGttacgggtgcacctcagccacgctcaaggtactaaacaatataaccgccatcgataaaagacagtactatgtcttcatcgacctggccaaggctgtcgactctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763235 lncRNA downstream 15686 33626979 ~ 33627240 (-) True G1540717
TU1763139 lncRNA downstream 19139 33623547 ~ 33623787 (-) True G1540633
TU1763231 lncRNA downstream 21604 33620436 ~ 33621322 (-) True G1540713
TU1763168 lncRNA downstream 104732 33537970 ~ 33538194 (-) True G1540656
TU1763130 lncRNA downstream 128942 33508819 ~ 33513984 (-) False G1540627
TU1763566 lncRNA upstream 3887 33656725 ~ 33656944 (-) True G1541007
TU1763660 lncRNA upstream 201049 33853887 ~ 33867357 (-) True lrp12
TU1763684 lncRNA upstream 222412 33875250 ~ 33939003 (-) True G1541115
TU1763778 lncRNA upstream 378659 34031497 ~ 34033219 (-) True G1541207
TU1763798 lncRNA upstream 417129 34069967 ~ 34070184 (-) True G1541225
XM_021571689.2 mRNA downstream 31978 33606949 ~ 33610948 (-) False LOC110496048
XM_036952525.1 mRNA downstream 60955 33579796 ~ 33581971 (-) True LOC110496046
XM_021571686.2 mRNA downstream 69060 33560842 ~ 33573866 (-) True LOC110496044
XM_021571687.2 mRNA downstream 69219 33572014 ~ 33573707 (-) True LOC110496045
XM_021571680.2 mRNA downstream 109239 33526141 ~ 33533687 (-) True LOC110496042
XM_036952526.1 mRNA upstream 4860 33657698 ~ 33674304 (-) False LOC110496049
XM_036952529.1 mRNA upstream 39554 33692392 ~ 33695690 (-) False LOC110496050
XM_021571695.2 mRNA upstream 39554 33692392 ~ 33695704 (-) False LOC110496050
XM_036952530.1 mRNA upstream 39554 33692392 ~ 33695869 (-) False LOC110496050
XM_036952528.1 mRNA upstream 39554 33692392 ~ 33695870 (-) False LOC110496050
TU1763210 other downstream 32033 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 32033 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 251174 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 706357 32899578 ~ 32936569 (-) True G1540148
TU1761767 other downstream 1080806 32561726 ~ 32562120 (-) True G1539348
TU1763572 other upstream 4803 33657641 ~ 33674231 (-) True LOC110496049
TU1763897 other upstream 509089 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 1082536 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 1484799 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 1522468 35175306 ~ 35180028 (-) True LOC110496081

Expression Profile