RNA id: TU1763572


Basic Information

Item Value
RNA id TU1763572
length 1695
RNA type TUCP
GC content 0.40
exon number 3
gene id LOC110496049
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33657641 ~ 33674304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACACCTGCGAAACTTATTTTTTTCAACGATGAACAGAATTATTCTCAGCATTTTCGCAGTTGGCCTGTGTTTTTCAGTTGGCCAGGCTCTGCAGTGCTTCAACTGTGAGCTCTGCATCTTCAACGTGTTCCAGACCAAAGTCACCTGCGGCGCTGACGAGCAATGTTTCAAAGGTGTCGGAAAAGCAGCTCATGTTTTGGAAATCAAGACAAAAGGCTGCCTGAAAATGAACGACTGCAATAAGGTGTCTACAACCAAGTTCCCTTCCATTTCCAACGTCACAGTCTACAGCGTAAACAAGACCTGCTGTAGCTCGGACCTGTGTAACGCTGCCCCGGGCCAGCCCCGAATGAGAATCCTGCACCTGGCCCTCGCCACCACCTTCATGACCAAAGTCCTAGTGTAAGGGGGGGGGGCCCTCTGGCCTATACATATACAGAGGTTGATACGCATGTAGGTTGATGGTTCACACATGCCAACATTAGCAGCATACTGTCCATGTATAGAAGTCCTGCATTATCTTATATAATTTAGGCCAAGGAGGAAACATTTAGTGTATCATACCATCTAAACTTCAATTATTTCCACTAAAAAAATAGATTTGTCCTTGATGCCTGGAAATCTCTAAATTAGTTTTATTGCTCACTTGGAAATGCAGTCAGATTAGCTTTTCCCTGACCCTCATTCCGTTGCACTTACACACCACGAAAAACATTCAATTAAATGGAATGCTCACATACAATAGGCAACTTTTCATCAACATAATTGAGCAGATGCCTTCTGGCACTTTAGTAGGATGAAGCGCTTCAGTCATTATACTGTATAACAAATGAATGTGTATACTGACCGATTCATTCATCTTCATTAGGGAGCTCCGCTAACAAAGACAATATTTACCAACTTTGGTGTTGGTTATACCTGCTTGTACAGTAGGTGTCATGGGTGATGGACTGCATTCAGTGTTGTCCCAATTGCCACGCTCTATTATACAGTATCCCCGAGGCCAATGTATACATTAAAGTTTAAGTACATGCCATTTCAGTCAAATGTTAATTTCAGATGAATGCTACTTTCAAACCACTATTTCAATTTGATGTTCAATGTTAATGAGCCGATTATCCAGCCACTTGGTGTTGGGGAGCTCCACTGATCACCCAAATTACAATTAATAATGCAATTGCTCTATGACCATGTTTCCCCCATTGATGACCTAGACCAAAGGAGGGCCAGTTGCTAAACTAGTCTCTGTCCCTAGAAAGGGCAAACAATGTGGTTAATCTTGTTTTGACCGGGAATTGTATCTTTGTCCACCCTGCATATTCCTTTTTGCCTAAAGTAATACTTGTATTTGTATGGCAATATTAGAATGTAGGTGTAGATAATTAAATCAAGCTTTATAAATGCTATTTTTATTAATAGGATTTTCTAGGTTAATTAGAAATGTGTCAAACATACTTGTTTAGGAAGAACTGTGTACTAATTTGATGTTGTACTAACTAAATGGCTTGACTGGTTAGGTAAATATGAAACATTTTAAATTTTTGAAAACCTATTTTTAAACTGTAAATGTGTATACTGTACGGGATTGCTGGGTGACTGCAAAAATAAATGATTAAAGCTTCTACAAAATCCCTTACCACCTTAGTTCTTTGCTTTTGTCTATCGGCGTCATGACTTTTATCCACGCCCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763566 lncRNA downstream 697 33656725 ~ 33656944 (-) True G1541007
TU1763235 lncRNA downstream 30401 33626979 ~ 33627240 (-) True G1540717
TU1763139 lncRNA downstream 33854 33623547 ~ 33623787 (-) True G1540633
TU1763231 lncRNA downstream 36319 33620436 ~ 33621322 (-) True G1540713
TU1763168 lncRNA downstream 119447 33537970 ~ 33538194 (-) True G1540656
TU1763660 lncRNA upstream 179656 33853887 ~ 33867357 (-) True lrp12
TU1763684 lncRNA upstream 201019 33875250 ~ 33939003 (-) True G1541115
TU1763778 lncRNA upstream 357266 34031497 ~ 34033219 (-) True G1541207
TU1763798 lncRNA upstream 395736 34069967 ~ 34070184 (-) True G1541225
TU1763803 lncRNA upstream 405182 34079413 ~ 34080134 (-) True G1541230
XR_002469622.2 mRNA downstream 4803 33642926 ~ 33652838 (-) True LOC110496928
XM_021571689.2 mRNA downstream 46693 33606949 ~ 33610948 (-) False LOC110496048
XM_036952525.1 mRNA downstream 75670 33579796 ~ 33581971 (-) True LOC110496046
XM_021571686.2 mRNA downstream 83775 33560842 ~ 33573866 (-) True LOC110496044
XM_021571687.2 mRNA downstream 83934 33572014 ~ 33573707 (-) True LOC110496045
XM_036952529.1 mRNA upstream 18161 33692392 ~ 33695690 (-) False LOC110496050
XM_021571695.2 mRNA upstream 18161 33692392 ~ 33695704 (-) False LOC110496050
XM_036952530.1 mRNA upstream 18161 33692392 ~ 33695869 (-) False LOC110496050
XM_036952528.1 mRNA upstream 18161 33692392 ~ 33695870 (-) False LOC110496050
XM_021571694.2 mRNA upstream 18161 33692392 ~ 33695909 (-) False LOC110496050
TU1763210 other downstream 46748 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 46748 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 265889 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 721072 32899578 ~ 32936569 (-) True G1540148
TU1761767 other downstream 1095521 32561726 ~ 32562120 (-) True G1539348
TU1763897 other upstream 487696 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 1061143 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 1463406 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 1501075 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 1672664 35346895 ~ 35349662 (-) True LOC110496085

Expression Profile