RNA id: XM_036952529.1


Basic Information

Item Value
RNA id XM_036952529.1
length 1579
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC110496050
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33692392 ~ 33695909 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAATGCGGCCTAGTTTGGACGATGCGCCATATTGAATTTCCACCTGGCTTTAACGTTAGCTACTAGCTAAGGCTGTAACTTAGCAATAATTTTCTGCTGGTCATCTAGCAAACTATTGGTCTCCCGAGATGAGCAGTTCAGAGGAAGTGTCATGGATCTCCTGGTTCTGTGGACTGAGGGGAAACGAGTTTTTCTGTGAGGTGGATGAGGACTACATCCAGGACAAGTTCAACCTGACTGGGCTCAATGAGCAGGTTCCCCACTACCGCCAGGCCCTGGACATGATCCTGGACCTAGAACCAGATGAGGAGCTGGAGGACAACCCCAACCAGAGTGACCTCATAGAGCAGGCAGCGGAGATGCTTTACGGGCTGATCCACGCACGATACATCCTCACCAACAGGGGCATTGCTCAGATGTTGGAGAAGTATCAACAGGGGGACTTTGGCTACTGCCCCCGCGTCTATTGTGAGAACCAGCCCATGCTGCCCATTGGTCTGTCAGATATCCCAGGCGAGGCTATGGTGAAGCTGTATTGCCCTAAGTGTATGGACGTGTACACGCCCAAGTCCTCCCGGCACCACCACACAGACGGGGCCTACTTTGGCACTGGATTCCCCCACATGCTCTTCATGGTGCACCCCGAGTACAGGCCCAAGAGGCCCGCCAACCAGTTTGTGCCTAGGCTTTATGGATTCAAGATTCACCCCATGGCCTACCAGCTCCAGCTGCAAGCAGCCTCCAGCTTCAAGAGCCCTGTCAAAGCCATCCGCTAAtgcccagagagaaagagaagggagagaagatgATGATTGCGGGGACGGGTCAGCTGCACCAAGCTCCATACAGATGCCTCCTCCCCATACTGCAGATGTTATTATTTTGTTTAGGTTAGGACGTTTAAATGTGAGCGAGACAAACGCACAGGTTCTAAtcccaaacccacacacacacacacacacttagaattACATGCATCTGTTACCAAACTCACCAGTGCCAAAACAGAAAAGGTGGAGGGAAAGAAAGTCCATGGATGTTATTGGATTTGACGCTACTGTTTCCTTTTGTGATATTACCCCATTTTGCTCCGATGGTGAACTCTCGCCATGTTCTGTTTGTTTTCTGTTCTGTCTTTGGCACGGTTTGGTAAAGGGTCGTGGTAGACCGTCACCACTGGTTGAATAGCAATCCCTGCTCTACCCCCATACGCATGTACACTGGCTGGCTCTCACAGAGACTGCTTGGTCGATGATAAGGACAAAATCTGTCACTAAGGGTGTTGCCGTTTCACCTGCTCCTGTAAACCATTGTTTTACCAAGTCACACACTCAGGCTTGTGTCACTCTTTTATTGTGTGACACTCACTGAGGCCAGTGTGTCAAAGTGGTTATTCACAATAGTGTTCTGTTAAATTTGCCTTAAACAGAGACGCACGGGCGCTGTGATTTGTGGTTTACAGGAAGTGCGAGTCTAGGACACATTATAGCTTTGAATTTGTATATGTGCGACATAGGATAGACACAAATAAACCTGAAATGAATTAAATGTTCTAGAATGACCCAGAAAAGACATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763566 lncRNA downstream 35448 33656725 ~ 33656944 (-) True G1541007
TU1763235 lncRNA downstream 65152 33626979 ~ 33627240 (-) True G1540717
TU1763139 lncRNA downstream 68605 33623547 ~ 33623787 (-) True G1540633
TU1763231 lncRNA downstream 71070 33620436 ~ 33621322 (-) True G1540713
TU1763168 lncRNA downstream 154198 33537970 ~ 33538194 (-) True G1540656
TU1763660 lncRNA upstream 158197 33853887 ~ 33867357 (-) True lrp12
TU1763684 lncRNA upstream 179560 33875250 ~ 33939003 (-) True G1541115
TU1763778 lncRNA upstream 335807 34031497 ~ 34033219 (-) True G1541207
TU1763798 lncRNA upstream 374277 34069967 ~ 34070184 (-) True G1541225
TU1763803 lncRNA upstream 383723 34079413 ~ 34080134 (-) True G1541230
XM_036952526.1 mRNA downstream 18088 33657698 ~ 33674304 (-) False LOC110496049
XR_002469622.2 mRNA downstream 39554 33642926 ~ 33652838 (-) True LOC110496928
XM_021571689.2 mRNA downstream 81444 33606949 ~ 33610948 (-) False LOC110496048
XM_036952525.1 mRNA downstream 110421 33579796 ~ 33581971 (-) True LOC110496046
XM_021571686.2 mRNA downstream 118526 33560842 ~ 33573866 (-) True LOC110496044
XM_021571697.2 mRNA upstream 1473 33697163 ~ 33746773 (-) False LOC110496051
XM_021571699.2 mRNA upstream 1473 33697163 ~ 33746773 (-) False LOC110496051
XM_021571698.2 mRNA upstream 1473 33697163 ~ 33746785 (-) True LOC110496051
XM_021571700.2 mRNA upstream 88244 33783934 ~ 33812408 (-) False vps72a
XM_021571702.2 mRNA upstream 88244 33783934 ~ 33813301 (-) True vps72a
TU1763572 other downstream 18161 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 81499 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 81499 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 300640 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 755823 32899578 ~ 32936569 (-) True G1540148
TU1763897 other upstream 466237 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 1039684 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 1441947 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 1479616 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 1651205 35346895 ~ 35349662 (-) True LOC110496085

Expression Profile