RNA id: XM_021571698.2


Basic Information

Item Value
RNA id XM_021571698.2
length 9103
RNA type mRNA
GC content 0.55
exon number 16
gene id LOC110496051
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33697163 ~ 33746785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCGCCCCCTCTGCACTACCGTCTCTAGTAGCCGTTGACGGCTCTTGTAGTGACGGATTAAGCTCTCCTGTAATATTTTTCTTTTTCATTGGTTTTGTGGAAAAAGAAAAAGGAGTACAAtCTCAGGGCTCACCTTACTCAATGAGCGGACAGCGCAATGTCAGAGCGCTCTGGGCAAACTGCAAAGGGGAAGGATGGCAAATCCAAGTATGCGTCTCTCAACCTGTTTGATACCTACAAAGGAAAGAGCCTTGAAGCACAAAAGCCTGTTGTTCCCCCCCGCCATGGCCTGCAGTCTCTTGGTAAAGTTGCCTCCGCGCGGCGCATGCCACCCCCTGCCAGCCTGCCCAGTCTGAAGGCGGAGAACAAAGGCAACGACCCCAACGTCTCGCTAGTTCCCAAAGACGGCACAGGATGGGCAAGCAAGCTGGAACCAGCAGACCCAAAGAGtacCGATGTATTGTCAGAACCGCAGCTGGAGTTGCCGCAGCCTGTGGTTTCACAGACGCCTGTACCGACCCGCCCGAGAACCCCGCCAGCTCCAGAGgCTCCACCTCCGGTTCCCGCCCCGGTTTCAGCCCAGGCCGCAGGGGCAAGGTCCTGGGCTCAGGCCAGTGTTACACATGGAGCACAAGGAGATGGTGGAAAGGGATCAAACCAACCGTCGCCATTCTCTCGCGAGGAATTTCCCACCCTGCAGGCGGCTGGCGACCAGGACAAAGCTGGCAGAGAACAGGGCACTGCAGATCAGTGGTATGGGCCCGGACCAAGCCTCCGCCCTCCGAACATGACGAGTTGGCGGGACGGTGGGGGCCGTGCCTTGGCACCCACCGGGGAGGGGGTCGCAGAGGGTGGCCCAGGCGGGACGCTGGTCATGGAGGGGGCTGCCGTTGGTGGCCAGGCAGGCCAACCTCTCCACCAGCAGCAGAACCCACAGTCCCATGGGCCGCCTAGGAACCCCCCTGCCAGCAGCCCCGTGCTGCCCCAGACCCCCGTGGGCCCTGGCTTCCCACAGTACAGAGGGATCATGCCTCCATTCatGTACCCTCCCTACCTGCCCTTCCCGCCTCCGTACGGCCCCCAGGGGCCCTATGGGTACCCTCCACCTGGTGAGGCACCTCCCAGGTTTCGCCAGCAGGGTCATGACGGTCGTGGGCGTCCCCAGGGCGGTCCCcgtggtgggggaggagagatggtGAAGCGACCCTCCATCCTGAAGCAGGATGACCTGAAGGAGCTAGACGAACTGGACCACCAGGACGGAGACGAGGGCTgggcagGGGCACATGAGGAGATCGACTACTCAGCCAAGTTAAAGTTCAGCGACGATGAAGGAGaagaagatgaggagaggaacGAGAGACCCGAGAGGAGGGAAAGAAGCGAGAGCAAGAACGGCCCACGGGAGATACAGAGGTCTCAAGAAGGTCCCCTTCAGGTGGTCCAGCGCTCCCGAGCCTCTGACAGTGGAGGGGACAGGGACACCAGCTGCACCCCTCCCTCCAATGCCGACCACGACTGCTCCCCACCCCCCTCAAGCAAGCCAGGGTGGGCTGAGGAGGGGTGCAACAGCGGCTGGGGGGGCCAAATTGCCCCCGCCACCTTCCAGGGGCGTAGGCCTGGACTGGGTGGCCCCCGGGAGCAGCCCTCCCCCCCACCTGGGCCTCTCCTCCACCAGGGACAGGGGCCTTACTCCTACTACCGACAGGACCGCAACTCTCCTAATCAGTCCGGCCCGGTGGTAGCCCCCGGAACTGTCTCTGCCTCCCTGGCCCCCGGGAAGCCCGCCCCCTCCCCACAGCTTCAACAGCAGCAGGCTACTTCCCCCGTCCCCGGAGGACCCACTCCTCCGCCTCAGACAGCTAGTCTGCTAGCTCCGCCCCCTGGTGAAGACGAGGACGAGACGTGGCGCCAGCGCAGGAAGCAGTCCTCCTCGGAGATCTCAGCCGCCGTTGAACGTGCCCGCCGGCGCCGCGAGGAGGAAGAGCGAAGGATGGAGGAAGAGCGGCGCGCGGCCTGCGCTGAGAAGCTGAAGAGGCTGGATGAGAAGGCCCAGCAGCAGGGTGGTGGTGGGAGCAGCGGAGGCTCCAAGCCCCCCAGTCTGGACGGCAACTCCGCCACGGCCGGAAGCCCCAGCCCTTCCCTATCGGCCTCGGCCTCCTCCCCTAACATCAGCCAGCCCCCTTCTCCCTGCGTGGACCATGACGAGTCCCCCCTTGCTGTCCTGGCTGCCCAGGTTTTGACCAGGGACCTAGTGCCAGGGCCCAGTCCCACCGACAGACAGAGGGCCAATAGCAACAGCAGCTATGACTCCATTACTGACACCCAGGTGTATCCCCAGCCCCCCACTTCCCAACTGCAGCAGCCCTCTCTGGAGGTCCTGCTGCctggggaagggaaggaggagatCCTAGGTAGTGCTCACGTCCGCAgcggaggaggtggtggtggaggagtggtAGACCCAATGAAGGTAGAGGGCATGGGAGGAGGAGCAGGTCGCCAAGTCAGTGCACTCCCCGGACAGGGCTTCTCCAAGTACCAGAAGTCCCTGCCTCCCCGCTTTCAGAGGCAGCAACAGGAGCAGCTgatgaagcagcagcagcagtggcagcagcagcacagccaagCAGCCCAACAGAGTCAGCAGCAGCTCCCGCCTCAGCAGTCACCTCAGCAGCAGGGCCCAGGGGCCACCCCTCAGACCCAGGGTCCCAAGCAGCAGCAGTCTGGGCCCCTGCAGTACCCTCCGCAGGGCTCAATGGGCCGCGGCCCCCTGCCCATGAACTTTGACCCCCGCTGGATGATGATGCCCTACATGGACCCACGGATGATGCAGGGGAGCATGCAGGGTCGCCCTCCAGGGCCCATGGATTACTATCCGCCCAACATGCAACACGCAGGGATGATGGGACGAGAGCGCTCCGATTCGGGGGGCTCTGGTTCCGATAACTTCGAAAGGCAACAGCACCCGGGACACCCCCACCGTGGTACGCCCCCTATGGACCCCAAACTGGCCTGGGGGCCCGAGGTGTTCCCCACGGGCAGCGAAGGCAGGGGACTGAGTTCCCCTCTGAGACAGAAGCAGGCTCTGGAAGAGGACAGTGGCAGTGGGACTAGGAGTGACACCCCTCCAGTCCGTGGTTTGCGAGAGGGGGGGCTAGGCCCCATCCAGCAGCCCAGCTCTGGCTCCGGCTCCTCCAACCAGACCCCACCACCTGTGGGCACTCAGGTGGGGGGCCAGGGAGGAGGCAGTCACCACCACCAGTCCTACATGGGAGGCCGGGGCAACTACAGCAACTTCCCCGACCAGGGCTCCCGCATGGCCCCCCACCAGCAGCAGCAACCGAGGGGGAGTGGTGGAGGCTTCAGCCACCAGGATGAGGGCCAGGGCCACAAGGGCGGCCAGCAACAGGGCCAGATCTGGGGGGCCCCCCGCCCCCACTACGACCGCAACGGGCGCACAGACCTCTCTCCCCTGGAGAATAACAACTCCCACCACCCTCAACACCATGGTCATCAACAACATCAAGCCCCCTCCCacttccccctccatctccacaAGTCCGAGAATGGCCGCGGTGAGAGAGGAGGCGAAGCCCTGAAGAAGGGTGACCCCTCGCCCTTGCTCCAACAGCCGTCCCTTTCCTCctgctcatcctcctcttcctcatccaggGAGGACGACAGTGGAAAGGCGGTCCTGCATCACCTTCCACCTCAGCGCGAGGCCGACACAGGAACCGGGCAGAGACATGAAACAGGAAGCAGCAGAGAAATGAAGCAGGATAAGATGGGCCCTGGCCACAGCCACTCTCAGTCCTCTGTGACATCTCAGCAGTCCCATCCTCAGTCCCAGCAGCAGAGGCAGGGCCAGGAGCAGCACCACCACCGTGACCCCAAGCCCAACCAGAGGGAGCGAGGCGGGAGGGAACACAAGACTGAGACCCAGTGGGGGCCAAGGCCAGGCAGCAGCAACGCAGGGGTCCCCTCTTCACACAACAGGAGAGCAATGGGTGGACATTCCCGCGGAGGGGAGGATTCTTCCAATCACCCAACAGCGTCTGACCACAACAAACCCGCCAGTGGCCAATCGGGAGGTGGAAACGCCAACAAGAGGGCGGGGCCTATCAAGAGGCCTGtgctgaagagagagggaggaggggagggcgaGGGAGGAGAAAAGACCAGCGGAGGTTTCGGAAAAGACAAAGATGAAAGACAAGATGGAGGCCATTCATCAGTCAAGCAGGAAGGATCCTCCGGCCCACAGAGCTTCGCTGCAGTGTCTGGTAAAGAAGTGCCGGCTCAGACAGGTCCTAAACCCAGAAACGGAGGGAAGGATCGAACAGCAAACGAACGAGGAGGAGTGGGTAAGGGGCCCAAAAATGGGGTCAATCCCACCCCCTCATCAGGGTACTCCGGCCACCCCTCTAACAGGCGGGACAGAGAGCGTTCCTTTGAAAGGGGCGGTGGTGCGTCCTACCACAGCGTCTCGGCCCGTGGCAACAGAGTCGGGCGAGGTGGCGAGTTCTACGGGCGCGGCCGGGGTTACAGAGGCACCTACACGGGCATGGCCGGGGGTGGCAGCGTTAGCCGTGGCAGGGCAGTGGGCAGCAGGAGTAGCCGAGACTACCGATCCGGCGGAGGCTACGACGAGTCATCGGGGGGAAGGCGAGGCCGAGGGGGGTCGCAGGCCAACCCGGGGCGCGCCCGTAATCAGAGCGAGACCCGCAGCGAGGGTTCTGAATATGAGGAGGTCCcaaagaggaggaggcagagggggTCTGAGACGGGCAGCGAGAGTGCCGCCAGCGACCTAGCCCAGTCGGACAAAGAAGACCGCAAGTCCAGCACCAAGAATGGCAGCGGCACAGATAACGTTACCGGTAGCGGCTCCGCCCCACCCAGAGGCTCCCATACCCGGGTGTTCACCCCCAGGGGTGTGCCCTCCAGGAGGGGCAGGGGGGGAGGTGGCGGGGGAGGTGGCAGCGGGGGAGGAGGTTCTATCTATaaaagtggtggtggtggaggaggaatggcTGGAGGTCACAGGTCAGGATCTAGGGCCGACCCTCACGGCTGGGCCTCCAAGTCTTCAGCCTCGGTCCGCAAGCATCAGGCCCCAATGCAGTCGGCCGCACCCAAAGACACGGGTCGTGGAACCAGtggggagaagaaggagaaggcaACGGACGGAAGCCAAGCTCAGAATCAGGGAGGAGCAACCCCTCCACAGTCTATCCCTGCTACACCTACTCCAGCCCCACAGGGCTCCACAGAGAACGGAGGAGTTGGGATCCAGCAATCCATGGCTAACCCCACTACCAACTCCAGCGGGCCccttccactccctctctctgggccGGATGGGCGTGGCTTCCCTCGTGTCCCGCGTGATGGCTTTGAGCGCCCCCCGAGACGCCGTCGCCACGGGCGCTCCCAGCATCAACAGGATAAGCCACCGCGCTTCCGGCGGCTGAAGGAGCGAGAGAATGCCGCTCGCATCAACGGAGGAGTCGGGATCATCGGAGGAGGACGACCCTCCTCGCCCGGACAGAGTTATGTTCAGGATGTCACTGACGGCACTCCCAACGTGGCTCCCACAACATGCGATGCCCCCAATGCTAACCCCAATGCTACTACGGCtaccaacaacaacagcaacaacagtacCGGTGGCCATCTTGGAAGTGCAAacagtcaccaccaccaccactacaaccaggGCATCTCCGGCCAGGCCCACTCTCAGCATCACCACAACCCAGCAGGGGGTGCCAAATCCCCTGACTTCTCCAACCAGAACTCCGATCAGGCCAATGAGGAGTGGGAGACCGCCTCCGAGAGCAGTGACTTCACCGAGTtccgggagagggagggaggaggagggaagtcCTATTCCtcccatcaccatcatcacccaCCCggaagaggtggtggtggtggaggcgggGGAGGAGGAGTGGTCGGAGAGCGAGAGATGACGGCGAAAGAGCAGGCGGCAAACAAGAGAAGCTTCTCCAGCCAGCGTCCTGGGATGGAGCGACAAAACAGGAGGGTCAACgctggaggaagagaaggaagaggccCACGGGGCCCGCCCAGTGGTGGTGGAGCCGGAAATGGAGGGGGGCAACGCGGCGAGCGCCGTGGAAACTGGCCCTCCCCCAAAAACAGGAAGTGAAGTGGAAGATCTGGAAACATTTCAAATGCATCCACCCCGCCCCACTGTTATTTATCCCTTTGTCTGTCGTTCCTTCAGCCTCTCTGTTCTCGTCCCTTAACATATTAGCACATTAATGTTCAATACATAGTTATGGAGACAGTGTACACACACGTTAGGCTTCTTTCGCTCTTCATCCATCTTCTATCTCCTGTCCGTTATTGTAAAGTGTCACTCTGCTCCCCCCTTTTCAGTTGTACCCCCCACCACCCTTCAGAATTCCACCCCGATTTAGGATCAGCAGACACGCTTGTTCGTTTTGAACACACACCTTTTGACggaaaacataaaaaaacaacacGTGTTTGCATTTACAAGCACAATATGACATATAACAGATATACACAATCACGCGTagtagtttgtgtgtatgcagtaTGATATGTTAAACATGTCATGATAAACATGTTGGATAAATTGGCTAACCAGGAGAAGGCAGATTTTTATATTTATGTACCTGTGTATATTTCTACCACGCTTTGGAATGGGGTGGTATTCTGTAGGGCAGTTATCTACATTATATGTTCCCACGTGGGGTGGGTGGGGTGCAGGTTCTTATTTTAACGAGAACAATTGTACCATAGATTTATACAAAATAATTATTTGTTTTGTTTCCCCTCTTTGCCTCTTGTCAGTTTTGtttcagtcccccccccccccttaaaaaGTTAGGGGTGTGTATTTTTCTTCTGCAAAGCAGGTCTTTAAAATAACTTTTTATACAattccccccacctccctctgaGTTTTTGATCTCCCGACGAACAAGTACATCTCTTTAATTACTGTGACAGCCACAACAGGCCAGCTGAAGTACTACTGCTCACCCATCCACACTCTCCTCATATTGATTTTTGTCTCTAATATCAATGTCTTTGCTGCTTGTTCAGAACTAGACGGTGTGATTTTGTTATTGTTGACCTGCTCTTATTACTTTCTGTTGCTCTTTTGTTCCTGTTAGATAAAAGGTTCTCTCAACGTAGCATTATCTTCTCACAAGCTGCAGACGTTCGATACCAGGGGTCTCAACCttattcctggagagctaccctcctgtagttTTTCGCTCCAagcccagttgtaactaacctggttcagtttatcaACTAGCTAATTCTGAGAAACgtgtgtgctagattagggttggtgTGAAATTCTAGTAGTGCtcaaggaacagggttggagagccctctTATATACACTGCAAAAAAGGACGTTTTGCTGAAGTAAGATTCTCTCCTGTTCATCAAGTTTGTTTACCCCAAGAACACTGAATTAATAGCTTGAATGctttatataaaaaataaaacaaatacattttctgTGGAGGCAATTTTTTTTCTCAAGATACTTTCACATGAAACTTCTGGTCAGGGAAACATTTGTTCACTGAAAATGCAAGTCATGTTGCGAGAAAGAAATATGAAGTTATATGCTCTTATTTTATTTTACCGTTtgacttttttctttttttttcttcaattgaTAATTGAGTCCACTCCTATAGTATAAAGAACTGGTTGGTGTATTTTTATTGAACAAGTTTGTTACATGATGCAGCAGGTGTCGTACTCTGGTTCCAGAGTGCTAAGTTTGGCCATCAGAGTATTGTACTACTATATTCATGCTGTCCTACTCAATGTAGGAAGGCACTCTACTCAAATACAACTGCACTGTGCTGTAGAAGAGACCCCTGTAACAAAAGTCGGGCTGGCAAGAGCTCCATGTTGAGGAAGTATTTTCAAAGTGTACATTATTTCAAGACAACCTTTCCAAAACCTCGGTGGCAACTATATGGCTCAATTGAACTGAATCTTGGACTATGGTGGAAAAGGGCCAGGGTGATGTGTTGTCACACCACTGATTTCCCAAATGTCCAAATACATTTGCAAGGTATAATACTATTCTCCAAGAGTGTTACAGGGAATACATGGGTTTAGAACTTGTGATGTAGACTGACTGATTCACAAAATGGCTTACAGCTGGTTTTGAAAATTTGATGGGGGCAGGGGGCAGCATCCAAGTTGAAATGGATAAAattataacattttattttatttatttgcatACATTTTTCACTGCTTGTAAGTTGGGGTTTGTTTGTTTACTGACAGCCACCATTTTAAGATTAGTTTTGGGATGTTTTGAGTAGGGCATTTGAGTGTGCGCATGCTTTTTCTGGTGTCTATATAAtaactttttttttggggggggggggtcatatggATGGCAAACGCTTTTGCCTTGTTTGCCCAAACTTAGTTTTAAGAACTATATTAAGACAATTCTACAGTTCTTTCTTATACATTTATGTATATACATTCAAGTATATGTTTATCCAAATTAAGTACATAATCAGTTACTTGGGTATAATGCCATTTTTGCCATACACCAAGGCAGGCAAAAATGAAGTGGGTACATTTTATTTTCCACTGACTTCTACTAAGCATTACCACATCCATGGGTGCAGCTTGCCTTGCCTgtggaaaaaaaaacattggtaGCCAAACACTTAACACAGGCTTATGAGCCCTGCATCCTTCCTTAACTCTTACTATTGATGTGCTCATATTGTATGTATCCATGTTTTAAAGAAAACGATAGTGTATTCTTGAAAACCTCAAAGATTGTACTATATTTACAGCATTACCAAGGTACCTGGAGTGGTTAAAGCTGTTCTATAATTTATGGTTTATTAATGGAACCGTAACATACCaatatatacatgtgtatatatcaACGTTTTTGTCTACCCCAACTTACATTCCCACAAACAAATGTTGCCATTTTTTAAGTTCAAGGGAGCAATGTACAAGCAGAGAAGTGTCTTATTATAATAAAATTACAGAGAATAAACTTTTGTTTTAATGGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763566 lncRNA downstream 40219 33656725 ~ 33656944 (-) True G1541007
TU1763235 lncRNA downstream 69923 33626979 ~ 33627240 (-) True G1540717
TU1763139 lncRNA downstream 73376 33623547 ~ 33623787 (-) True G1540633
TU1763231 lncRNA downstream 75841 33620436 ~ 33621322 (-) True G1540713
TU1763168 lncRNA downstream 158969 33537970 ~ 33538194 (-) True G1540656
TU1763660 lncRNA upstream 107102 33853887 ~ 33867357 (-) True lrp12
TU1763684 lncRNA upstream 128465 33875250 ~ 33939003 (-) True G1541115
TU1763778 lncRNA upstream 284712 34031497 ~ 34033219 (-) True G1541207
TU1763798 lncRNA upstream 323182 34069967 ~ 34070184 (-) True G1541225
TU1763803 lncRNA upstream 332628 34079413 ~ 34080134 (-) True G1541230
XM_021571694.2 mRNA downstream 1254 33692392 ~ 33695909 (-) False LOC110496050
XM_021571696.2 mRNA downstream 1254 33692392 ~ 33695909 (-) True LOC110496050
XM_036952528.1 mRNA downstream 1293 33692392 ~ 33695870 (-) False LOC110496050
XM_036952530.1 mRNA downstream 1294 33692392 ~ 33695869 (-) False LOC110496050
XM_021571695.2 mRNA downstream 1459 33692392 ~ 33695704 (-) False LOC110496050
XM_021571700.2 mRNA upstream 37149 33783934 ~ 33812408 (-) False vps72a
XM_021571702.2 mRNA upstream 37149 33783934 ~ 33813301 (-) True vps72a
XM_021571703.2 mRNA upstream 81556 33828341 ~ 33867431 (-) False lrp12
XM_021571709.2 mRNA upstream 432248 34179033 ~ 34183891 (-) False gdf6b
XR_005037435.1 mRNA upstream 432248 34179033 ~ 34183891 (-) True gdf6b
TU1763572 other downstream 22932 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 86270 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 86270 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 305411 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 760594 32899578 ~ 32936569 (-) True G1540148
TU1763897 other upstream 415142 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 988589 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 1390852 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 1428521 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 1600110 35346895 ~ 35349662 (-) True LOC110496085

Expression Profile