RNA id: XM_021571702.2


Basic Information

Item Value
RNA id XM_021571702.2
length 2009
RNA type mRNA
GC content 0.48
exon number 6
gene id vps72a
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 33783934 ~ 33813301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCCACCTACTAGGCTCACTTGcctcccattggaaacgacaggatGTGCTATATTTTAGTAGAACATATTTGATATCGACGTCATTAGCTGCTGCATGGTCTTTTGTGGTAGCTAACAACAAACAAGTTATATTTTTCAGCTAGCTAGCACGTTCCCTATTAATCTAGCTGCGCTAGATCAACATGAGTTTAGCATTTAGCAAAGAGCCCCGTAAAACGGCGGGGAACCGCATGTCTAAGTTGTTAGATGCTGAAGAAGAAGATGAATTCTACAAGACCACATACGGCGGATTCAACGACGAATCAGGAGATGATGAGTACAGAGGGGAGCACTCAGACACAGAGGACGAGGTCGACAGTGACTTTGACATAGATGAGGGTGACGAGCCTGATAGTGACCAGGAGGATGATGCTCCTCGCAGGAAGAGTCGAGTTGTCACCAAAGCTTATAAGGAACCTCTGAAGGTGACCAAGCCTAAACCAAAGAGGCCTTCAGAGGAGCTGAAGAAGACGGAGAAAGCCAAAATGGAGAGGAGGGTGCCGCAGGAGTTTCAGGAGTTTGGAGAGACTCGGAAGTCTGTGCGCCAGTCGACCAGCGAGCATACGCGGAAGACCAACCTGCGACTGCAAGAAAGACAGGATGCCCCCCGACGGCGGAGGGGAGCCCACCACGACCGACCCCTgacccaggaagagttgctggcTGAGGCCAAAATAACTGCTGAGGTCAACCTCCGATCCCTAGAGAACTACGAACGTCTTGAGGCTGACAAGAAAAAACAGGTCCATAAGAAGCGCCGATTTGAGGGCCCCACCATCCGCTACCACTCTGTCCTCATGCCCCTGGTGCCTCACTCCGTCTTAAAAGAAGAAAATGTGGATGTGGAAGGgTTAGACCAGGACACACCACTGCTCGTTGCTCCTGTGGCAGCAAGTCCAATGCCTTCCCAGCAACCCTTGGGAGGTCTTTGCTCCCGCACTTACATCACCTTTAGTGACGAGGAGGCCTTTGAGGCTGCCTTCCCCCAGGCTGTGCGGACCGGCTCCCAACCCCCCACCCAGGAAGTCTGTCCTGTCACCCACAAGGCTGCATTATACAGAGACCCAGTTACAGACATCCCCTATGCCAACACACGAGCCTTTCGCATTATTCGCGAAGCCTACCGCAAATATGTGGCAGCTCATGGATTCCCCAACTCTGCTGGGGGTTTCTCTGTGGTTGATGCCTCAGGTTCCAGGAGTGCACGCCAGAAAATGGTCAAGCAGAGCACAGTTGCAAGGTAGAGGCTTATATTCTCTCATAAGTCTGTCCTCCTTTTATTTAGAGCCCCTCATCTGTTCAAAGATTTAAATCTACAGTCTGGGATTAATCTTTCAGCGAAATGGCAGCCCCAGTACTTGTTTTGGTGTACAGCTGAAGCATAGGGCTATGGAAATTCTTGTTTGTAAACATTGGAGTAATAGAATTTACATTTAGGATAGAACGGggctttccaaccctgttcctggagagctactgtcctgtaggtatgtGAATAAAATTTTCAATAAATTTCCTTTAACATCCTGGGCCCTTTTTTGCCTGGAACTAAGTAGGCACAAGTGTCAAATTTAAGTTGGTTTGCAATTTCGTCATGGAAAAACAGGCGCACTGGCATTTTACAGACCTAACACCAGGTTTGGCAATTTACCTGTGGGACCAGTGGCAATATTTAAGACTCACAAAAGTAGGTGTTAACGGTAACGCAGTTGATAATGGATGGATTGTGAGAAGCACAGCCGATCCAGTCATGACGCACAGTGCTCATGGAAGGAGAGATGTGCCTTTTGTGCCGGTAATTCTCATATTTAGAAACGTAAATGGACACTCGGTCCCCCCCCATTTCATTTAACTTGATTAAAAACTAAGCACAACCTACCCTCTCCTTAATAGCAGAATCTCATCAGTGTGTATTTTTATGCTGGTTCATTAGCCAAGTAGCCTATGAATAAAGGAGTTTTAAATGGT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11664 VPS72, TCFL1, YL1; vacuolar protein sorting-associated protein 72

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763566 lncRNA downstream 126990 33656725 ~ 33656944 (-) True G1541007
TU1763235 lncRNA downstream 156694 33626979 ~ 33627240 (-) True G1540717
TU1763139 lncRNA downstream 160147 33623547 ~ 33623787 (-) True G1540633
TU1763231 lncRNA downstream 162612 33620436 ~ 33621322 (-) True G1540713
TU1763168 lncRNA downstream 245740 33537970 ~ 33538194 (-) True G1540656
TU1763660 lncRNA upstream 40586 33853887 ~ 33867357 (-) True lrp12
TU1763684 lncRNA upstream 61949 33875250 ~ 33939003 (-) True G1541115
TU1763778 lncRNA upstream 218196 34031497 ~ 34033219 (-) True G1541207
TU1763798 lncRNA upstream 256666 34069967 ~ 34070184 (-) True G1541225
TU1763803 lncRNA upstream 266112 34079413 ~ 34080134 (-) True G1541230
XM_021571698.2 mRNA downstream 37149 33697163 ~ 33746785 (-) True LOC110496051
XM_021571697.2 mRNA downstream 37161 33697163 ~ 33746773 (-) False LOC110496051
XM_021571699.2 mRNA downstream 37161 33697163 ~ 33746773 (-) False LOC110496051
XM_021571694.2 mRNA downstream 88025 33692392 ~ 33695909 (-) False LOC110496050
XM_021571703.2 mRNA upstream 15040 33828341 ~ 33867431 (-) False lrp12
XM_021571709.2 mRNA upstream 365732 34179033 ~ 34183891 (-) False gdf6b
XR_005037435.1 mRNA upstream 365732 34179033 ~ 34183891 (-) True gdf6b
LOC118940975 mRNA upstream 422087 34235388 ~ 34237566 (-) True LOC118940975
XM_021571737.2 mRNA upstream 781930 34595231 ~ 34610505 (-) False fbxl6
TU1763572 other downstream 109703 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 173041 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 173041 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 392182 33391339 ~ 33391752 (-) True G1540473
TU1762604 other downstream 847365 32899578 ~ 32936569 (-) True G1540148
TU1763897 other upstream 348626 34161927 ~ 34162458 (-) True G1541318
TU1765523 other upstream 922073 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 1324336 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 1362005 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 1533594 35346895 ~ 35349662 (-) True LOC110496085

Expression Profile