RNA id: XM_036951387.1


Basic Information

Item Value
RNA id XM_036951387.1
length 1954
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC110496058
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34127192 ~ 34133734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTCTAAGAAAGTGCCATATGGTCTTGAACTCGGTCAAAAACCCTGCAGTATGATGTGCGATAatgagtaggcctacattcaggaGCTTTCTGAAAGCGACCACGCTGAGATTGCTCCGCGAGCGGCCGCTTCTGTGTGCAGCTGGCCTGGTGATCGCGACGGGTTCGGCAGTCTACTTTTATAACAGATATTACGGCGTCGGTGAGGATGAACACGCCACCGTGGAGAACGTGGACCGTGTTGTCACGGTTGAAGAGGATCATGATCCCACCCTGGACCAGGAGGACCCAGTTCTTGTTCAGTTTGTGGATGGGGAGGTTGGGCAGCGTCCCTGTCTGGCTTTAGTCCCTTGGTCTGGACCTCTGTGGGTTCCCAGCTCTCTGACTTATTACCTTACCCTTGCTGGGAGGATGATAGTGAGAGAGCTGGCAGTGTTAAACACACAGATTTTCATGATGGAGCAGCCTATTTCCATCTGTTTCACTCCTGTAGGGAGGTTGGTGTGGGAGGAACTgtcttctcaaactgaacaggtAGCCATTCATATGCAGTATGTGGATGAGGAGGTTCAGCAGCAGCCCGATCTGACTTTAATCTCTTGGTCTGGACCTCAGTGGGTTTCAAGTGCCCCTGTCAAACTGCAGCCAACGTATTACCTTACCCATGCTGGGAACACGCTGGTGAGAGAGctgtcagtattaaatacacagATTTTCATGATGGGGCAGCCGATTTCCATCTGTTTCACTCCTGTAGGGAGGTTGGTGTGGGAGGAACTgacttctcaaactgaacagCCAAATAGTGAAGACTCTGGTTTTCCCTTTGAGAAGATGCAGCTGGTTGGGAACTGGGGTTCGTTTCATTTCCATACCTGGATAATCTGTTATGGACGAGTGCAGCAAAACGAAGAGGACATGCATCACCTGTGCATTGTGAGGGGAGTGGAGAAACAGCTGTGGTGGAGCAGAGTCATTCAGGAAAAAATCCTGGACCCATGGGGTAATGTCCAGGTGGTCCTCACCAACGAGGAGGTGACTGGTATTAAGTACCTTGGTAGAAGGATCCATGGACTCAGGTCTTGCCTCGTCAAGAGGAGGTCAGAGTTCACCTATTATGAGGACGCCCAGCAGGTGGATATCTCCACCACAGTGGAGGGGTTCcaggagaggggggatgacaTGATGACGTATCAGTTCTCTACCTCTGACATTATCACCACCCCTCACGAGCCGTCCTCTGGCTCCTCTCAGCAGTTCCCCCAGGattctccacctccccctccgcCACCCCCGTTCCCTTCCCCTCCACCTTACCACTTCACCCAGGACCAGACCCCTGACAGCACTCCTCAGGAGTTTGTGGAGGAGCAACATAATGTTGCAGATGTGCCCCAGCTGTGGAGTTACTTTAGAAACCAAGGGACAAGCAACTTCTCTCTGAGGCTGGCCGGTATCCGACGTGCTATGGAGGCTCTGACATCCTCAGACAGTACCTCCCTTAATTACCTCACCCACGCTGGGAGGATGGTGTTGAGTGGACTGTCTGAGCTCAACCAGCAGATCAACCACATCAATTTCACAGATGTATTTTATGAATTCATTCTACTGAGCCTTCTTGAAGGAAAAACATCTCTTCCAACATCTAGGCCTGGTACCTTCTTTTATCTGCTCATGGAAGTGATGATGAGGATTCGCCCTCCTGGAGGAGCCTGGACAGAGTCTGCTGGGAACTTCTACCTCCTCATTAAgGATCAGATGAAGGCGTGGTTGGACTCCATCTTCAACCTCGATGAGTCCATCTATGAAAGCCCACAGAGGCTCTCTTGGAAGGTGATGGAGAATCTAGAAATGCCGGTTGACTTTCTCCTGTCCAGCCTGGATTAAGGGTCCCAAACTGAGCTGAGGATCCCAAACACAAAATAAAGTATTTTGCATTTAAACATTATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763843 lncRNA upstream 760 34126226 ~ 34126432 (+) True G1541270
TU1763841 lncRNA upstream 1201 34125670 ~ 34125991 (+) True G1541268
TU1763816 lncRNA upstream 6215 34120716 ~ 34120977 (+) True G1541243
TU1763552 lncRNA upstream 51611 34075128 ~ 34075581 (+) True G1540994
TU1763533 lncRNA upstream 81512 34043133 ~ 34045680 (+) True G1540976
TU1763854 lncRNA downstream 388 34134122 ~ 34134806 (+) True G1541278
TU1763876 lncRNA downstream 13864 34147598 ~ 34147846 (+) True G1541300
TU1763880 lncRNA downstream 17699 34151433 ~ 34152312 (+) True G1541304
TU1763923 lncRNA downstream 44556 34178290 ~ 34178506 (+) True G1541344
TU1763987 lncRNA downstream 83548 34217282 ~ 34290422 (+) True G1541404
XM_021571707.2 mRNA upstream 10910 34092247 ~ 34116282 (+) True ints8
XM_021571705.2 mRNA upstream 38632 34080108 ~ 34088560 (+) True LOC110496056
XM_036952532.1 mRNA upstream 67232 33938682 ~ 34059960 (+) True LOC110496055
XM_021571683.2 mRNA upstream 589623 33535229 ~ 33537569 (+) False LOC110496043
XR_005037570.1 mRNA upstream 615233 33511830 ~ 33511959 (+) True LOC118941241
XM_021571710.2 mRNA downstream 127578 34261312 ~ 34265470 (+) True trhrb
XM_021571711.2 mRNA downstream 163450 34297184 ~ 34300652 (+) False LOC110496061
XM_021571712.2 mRNA downstream 242362 34376096 ~ 34574937 (+) False pleca
XM_021571713.2 mRNA downstream 242362 34376096 ~ 34574937 (+) False pleca
XM_021571715.2 mRNA downstream 242362 34376096 ~ 34574937 (+) False pleca
TU1763554 other upstream 48118 34078718 ~ 34079074 (+) True G1540996
TU1763040 other upstream 589628 33535276 ~ 33537564 (+) True LOC110496043
TU1763041 other upstream 636071 33489337 ~ 33491121 (+) True G1540551
TU1762993 other upstream 668768 33455560 ~ 33458424 (+) False LOC110496797
TU1762103 other upstream 1067335 33058990 ~ 33059857 (+) True G1539671
TU1764399 other downstream 749780 34883514 ~ 34898411 (+) False mbpa
TU1764400 other downstream 749780 34883514 ~ 34898411 (+) True mbpa
TU1764613 other downstream 1148869 35282603 ~ 35283706 (+) True G1541989
TU1764676 other downstream 1241510 35375244 ~ 35386463 (+) False G1542037
TU1764671 other downstream 1241646 35375380 ~ 35380006 (+) False G1542037

Expression Profile