RNA id: XM_021571709.2


Basic Information

Item Value
RNA id XM_021571709.2
length 4458
RNA type mRNA
GC content 0.41
exon number 2
gene id gdf6b
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 34179033 ~ 34183891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGTATTTGACCATGTCTTTACCAGGATAGTAAACTAGGACATGATGCTTTGATTGCTTTCCTACCATGATATAAGTTAGAACCCGCCGGTCCACTATTAGCAGCGAGTGAATTCCAAGCTGGGCGTGTTTTTGCGCTCCTTTTAGCCCAGTTGACGATCCCGTGTGGAGCACACTGCAAAGTCGGCACTTGTTGAATGTGGATGAAGTCCAGCTTCGATAGTGCCCGTGGTCCCTTCGCCACATACTAAGCATCTACTCTGACACATATTTGACATTTCGCTGACGTTTTTTTTATCAATCTATTTATTCTTGAAAATTATGGATTTCTATCAAATAACCACATTTTACGCGGTCCTCACATGTGTATGGGATTTACCATGTTTTCAATCATTTACTGTTTTCCTTCCGTCTGCCTCAAAGAGCAGCAAGGTCCCGAAAGTATTTGATGGACGAGAGGCAAAATATTTCAAAGATATctactcatcatcatcatcatcatcatcaaatgAGCGGTATTACAAGAGTGGGTTCAAAGATTCAGTTGAACCACACGACTACATGCTTTCAATTTACAAGACTTTCTCTACAGCCGAAAAATTGGGGCTGAACGCAAGTTTCTTTCGGTCGTCAAAAGCAGCTAACACTATAGCAAGTTTTGTGGACATCGGACAAGATGACCTCCCACTCTCCCCTTTGCGAAGACAGCAGTATCTGTTTGACGTCTCAACCCTCTCAGACAGAGCCGAGGTGCTGGGGGCTGAGTTGAGGATATACACCAAAGTGTCTGGGAATTTCAGGATGTCGGAAATGGAGCCAGTGGACATTCAGCTACTCTCCTGCCGCTCTCAGCAGCTGCTGGATTCCAGAACGTTGGATCTTCAGGAGTCCCATCGGCCCAGATGGGAGGTGCTGGATGTGTGGGAAATATTTAAGGACAGGGATCACCTCACACAGGGGAGCCAGTTCTGTCTGGAGGTCAAGGCCATGCTGGACAACACTGAGAGGGAGCTTGACTTGCATCATCTGGGCTTTCACAGAAATGGTCGCTCACAACAAAAGAAGGCCATTTTAGTGGTGTTCACCAGGTCCAAGAAGAGACAGACCCTTTTcagtgaaaggagagaaggaaggacatTGATTGGCCATGGGGaaaaggggaaagagaggggccCTCGTTCTAATTCCAAAGCCAGCCGGAGACGCAGGACGGCGCTATTGAAGAATCGCCATGGGAAGAGGCATGGCAAAAAGTCAAAATCGAGATGCAGCAAGAAGCCGTTGCATGTGAACTTCAGAGAGCTGGGCTGGGACGATTGGATCATCGCTCCTCTGGATTACGAGGCGTACCACTGTGAGGGCGTGTGTGACTTTCCTCTGAGGTCACATCTAGAGCCCACAAACCATGCCATCATACAGACCCTTATGAATTCTATGAACCCCAGCAACATGCCTCCTAGCTGCTGTGCCCCGTCCAAACTCAGCCCTATCAGTATTCTCTACATCGACTCAGGAAATAATGTGGTGTATAAGCAGTATGAGGATATGGTGGTAGAGTCGTGTGGTTGTAGGTAATGCCTTTTTGGAAAGGCTGTGTTTTGAGTGGGAATGAAATGTGATCATCAGGGCCTATCTGGTGTGAAGGCAATACTTTAAGCTACCTGatgggctgcatcccaaatggcacccttttcactatgtagtgcactacttttgatctatagggctctggtcaaaagtagagcactatataggcaatagggtgtcatttgggaccagAGCGCCTTGTCTAATATTGTAAAATGGTGTGGTGGGATTAATAATCACCTGCCCCAAACTAAGCCATGTTCATTTCTTCTTCCCTGGTCTGGTTCTCAGTTTAAGACTGGTAAGCGAGGCTACTTCTTCCCTGAACCCTGTTACGTGTTTTTATTTACCAGTTAACGGGAGGGACACTTCTAAACACCCAGCAAATGACTGAAAATCAAAATGTGTCATATCAATGTAAAAACATAATTCAAACAGCAGAAGTCCTTTCATAGCTCCTTGGCTTGGCCTTTGACTCGAGAGGATGCTTGAGTGCTACTCAGAATGTAAAGCCTTATTGAGTTGCAACATCTGTGTAATTCAAGTGCACTCCCACCCAAAATGCCCCCAGGCTTAGACTACTTAGCCAAGGGctcagtctgtgttccaaatggcaccctattccctacatagctaCATAGTGTAGTGCACACAATATATAGGGAAttaggtgccattttggacgtagTCATGTTGTGGTTAGATACAAGGTGATAAAATAATGCCCATGAGCCTTTTCCTGTAATGCACTGAGATTCATATTACCATATGTAAGCACTTGACATGGAAATTATAATTTATGTTCTATCAATAAGttattatatttttgttgttggagTTTGCTGTCGGGGTTTAATACCTATCATGTTTTGGTCCTGTACAAGATTGTATTTCAGGTCCCATAAATGAACAACAACTTTGAAGGCTTAACAAAGCCTTCATGAACCATGTGTAGATGGTTCAGAACGTATGTATTAATAAGAAAATTCATACTATTTCAAAGGTAACGTACAGTATGGGGTTTGTAAAGCATCTATGAAGACCTTATAAATTATGGTTTCAGAAAGTCTTAAAAGTTGCTGTTTGTTTATATTTCAAAACTTTAAAGATTGTATTTTGTAAAACTTCTGGTGTAGATTTGAACAAGCAAAGAATGAGGGAGCCTTAACTGTTAAAACAGGAAATTATTACCAGTCAGAAAAAAAGACCCCTGTGTTTTTGCAATGATATACTGCTCCATAGTTTATAGACGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTGTTACTTTAGAGTCATCTTTGTTGGATTTTGTATTTTACTTTCTATTTTCTACTGGAACTCAAAACCAATTTATTTAATATTCTCTAACAAATTTAAAACAGATttacaaatgttttttatttcccttaactaggcaactcagttaagaacaaattcttattttcaatgacaaccaAATTATATATTCCTTTTTTTACCTGTTAAGGTTACATGTTTTATATAATAGTATATTAAATTATCTTTTTTGTATTATGTATTTTGATTATATTTTCCAAAATATGTGTATCATTGCGTTACTCGATTGTGCAGTGTCACTATAGTCGAGTGGCGGTCGGtgacgtttaagatgagggaggacgattatTTTCTTTATGAGCATGgctttatttctattacagcatattggatgactgttattcatatttcattcacccagctcaatgtaacatcaacaGTTTTAGGCTATGATACTTACATTTTTcatgtacccatcatgaggttgctacaatttagcctatgaatgaaattTACCACATAGATGCACAGGTCGATTAATCAaggagacagacagtgacacattcagtaCCACCTTgaacactcttgcctgcatctagctgatcaaGGTTGTGATCATTAGTCcgacagttgcaaacaagagtttctattggacaaactCAGGAATGTTTATCCTcatttcgttccgtttgcttaagtttcaaaaatgtttttcaacagaatctgcggaatgaatacacccttgATCACACGCAAACAAAGTTCACTTTCGTAAcacccacatacaaacagcagGATAATTTTGCTCAATGTAAAATTCCTTCATGTATCTGTGCGCTCTCCTCTTCTCGCATTTTCCTTTCGCTTGTAGACTTCCATGCACAAAAcgtcagctgtctgtgaccaagcaaaaaaaaacaagccaaaccttcatatcataaccgccaaccgctacacacaaactatctacaTCGCCGAAGCAACTAGAACTAAcacattagtaaacccgctacaatcatgcagtacagtgtacagtcagcaagcagtttagtgGTTACACTGGCGAGCCCCAGTTGCAATAGATTTATAAaatcaaaagcttaccttgacttggaagagttccagtgttggatagccatagccagccaGCAATCATAgcctccctctctgtttgagtaggctaaactagctagctgcatttgctagctaagtgaaagtaaaaacaaacaaaaaatatatctCTTGCTTCTTCATTTTGGTGTTCATTTTGGTGTTAGTgtctgtgggacccattttcaatgtttactaaaaGAAAAGTAATACAATTAGTTATTTCttcaacctgagactcattggccttgactcattttctgtgaagaacatgtaaaataacacatgttcattgagtgcacactgtgcacccccttacacatttatattacatatgtggtgtttgGGTCTACTGGACCCGAGGGTAATAAAagtgtggaaaagtgtgtgtgcagGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1763916 lncRNA downstream 5298 34173511 ~ 34173735 (-) True G1541337
TU1763913 lncRNA downstream 7275 34171442 ~ 34171758 (-) True G1541334
TU1763891 lncRNA downstream 19069 34159717 ~ 34159964 (-) True G1541313
TU1763885 lncRNA downstream 23580 34151912 ~ 34155453 (-) False G1541308
TU1763886 lncRNA downstream 23580 34151912 ~ 34155453 (-) True G1541308
TU1765272 lncRNA upstream 116070 34299961 ~ 34300868 (-) True G1542514
TU1765302 lncRNA upstream 174664 34358555 ~ 34363965 (-) True G1542543
TU1765325 lncRNA upstream 218673 34402564 ~ 34402790 (-) True G1542566
TU1765326 lncRNA upstream 219155 34403046 ~ 34403265 (-) True G1542567
TU1765333 lncRNA upstream 228280 34412171 ~ 34412443 (-) True G1542574
XM_021571703.2 mRNA downstream 311602 33828341 ~ 33867431 (-) False lrp12
XM_021571702.2 mRNA downstream 365732 33783934 ~ 33813301 (-) True vps72a
XM_021571700.2 mRNA downstream 366625 33783934 ~ 33812408 (-) False vps72a
XM_021571698.2 mRNA downstream 432248 33697163 ~ 33746785 (-) True LOC110496051
XM_021571697.2 mRNA downstream 432260 33697163 ~ 33746773 (-) False LOC110496051
LOC118940975 mRNA upstream 51497 34235388 ~ 34237566 (-) True LOC118940975
XM_021571737.2 mRNA upstream 411340 34595231 ~ 34610505 (-) False fbxl6
XM_021571738.2 mRNA upstream 411349 34595240 ~ 34610507 (-) False fbxl6
XM_036952539.1 mRNA upstream 411349 34595240 ~ 34610583 (-) False fbxl6
XM_021571736.2 mRNA upstream 411349 34595240 ~ 34619367 (-) True fbxl6
TU1763897 other downstream 16575 34161927 ~ 34162458 (-) True G1541318
TU1763572 other downstream 504802 33657641 ~ 33674231 (-) True LOC110496049
TU1763210 other downstream 568140 33602474 ~ 33610893 (-) False LOC110496048
TU1763213 other downstream 568140 33604148 ~ 33610893 (-) True LOC110496048
TU1762958 other downstream 787281 33391339 ~ 33391752 (-) True G1540473
TU1765523 other upstream 551483 34735374 ~ 34739639 (-) True atp9b
TU1765772 other upstream 953746 35137637 ~ 35138554 (-) True G1542988
TU1765778 other upstream 991415 35175306 ~ 35180028 (-) True LOC110496081
TU1765900 other upstream 1163004 35346895 ~ 35349662 (-) True LOC110496085
TU1765944 other upstream 1268727 35452618 ~ 35504157 (-) True G1543128

Expression Profile